Wall clock time and date at job start Tue Mar 31 2020 12:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00034 * 2 1 4 4 H 1.48505 * 109.47102 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46852 * 300.00253 * 3 2 1 6 6 H 1.48493 * 109.47204 * 60.00019 * 3 2 1 7 7 C 1.37876 * 119.99839 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99639 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00100 * 359.97438 * 7 2 1 10 10 O 1.42899 * 110.64072 * 56.85995 * 9 7 2 11 11 C 1.55158 * 110.71824 * 180.02562 * 9 7 2 12 12 C 1.54914 * 101.61488 * 154.02318 * 11 9 7 13 13 N 1.47462 * 104.81132 * 323.04235 * 12 11 9 14 14 C 1.34781 * 125.62986 * 204.04869 * 13 12 11 15 15 O 1.21591 * 120.00230 * 174.71733 * 14 13 12 16 16 C 1.47578 * 119.99850 * 354.71767 * 14 13 12 17 17 C 1.39396 * 120.16822 * 323.91903 * 16 14 13 18 18 C 1.38480 * 120.48365 * 179.75783 * 17 16 14 19 19 F 1.35097 * 119.78607 * 180.28096 * 18 17 16 20 20 C 1.38180 * 120.42431 * 0.49454 * 18 17 16 21 21 C 1.39376 * 119.91366 * 359.76645 * 20 18 17 22 22 C 1.46852 * 134.26180 * 180.02562 * 21 20 18 23 23 C 1.33978 * 106.14931 * 179.97438 * 22 21 20 24 24 O 1.34463 * 110.12523 * 0.02562 * 23 22 21 25 25 C 1.34625 * 110.92410 * 359.97438 * 24 23 22 26 26 C 1.47025 * 108.72432 * 24.07013 * 13 12 11 27 27 H 0.97007 * 119.99621 * 359.97438 * 1 2 3 28 28 H 0.96696 * 114.00158 * 303.13798 * 10 9 7 29 29 H 1.09002 * 111.00170 * 272.11114 * 11 9 7 30 30 H 1.08996 * 111.00691 * 35.93380 * 11 9 7 31 31 H 1.09007 * 110.36742 * 81.84822 * 12 11 9 32 32 H 1.09005 * 110.36560 * 204.16716 * 12 11 9 33 33 H 1.07997 * 119.75700 * 359.97284 * 17 16 14 34 34 H 1.07994 * 120.04230 * 179.73883 * 20 18 17 35 35 H 1.07997 * 126.92683 * 359.97438 * 22 21 20 36 36 H 1.07994 * 124.93817 * 179.97438 * 23 22 21 37 37 H 1.09000 * 109.87961 * 239.56061 * 26 13 12 38 38 H 1.08993 * 110.00836 * 118.46391 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 0.3656 -2.5695 -1.1199 11 6 2.2334 -3.7001 -0.0005 12 6 1.3750 -4.8052 0.6641 13 7 0.5906 -4.1032 1.6968 14 6 0.0652 -4.6673 2.8024 15 8 -0.4835 -3.9737 3.6368 16 6 0.1560 -6.1270 3.0003 17 6 0.0531 -6.9894 1.9100 18 6 0.1424 -8.3599 2.0875 19 9 0.0464 -9.1825 1.0201 20 6 0.3245 -8.8916 3.3498 21 6 0.4243 -8.0453 4.4527 22 6 0.6148 -8.2573 5.8933 23 6 0.6296 -7.0389 6.4505 24 8 0.4678 -6.0961 5.5055 25 6 0.3401 -6.6537 4.2868 26 6 0.4760 -2.6865 1.3207 27 1 -0.4850 0.8401 0.0004 28 1 -0.2690 -1.8414 -1.1659 29 1 2.5097 -3.9787 -1.0175 30 1 3.1185 -3.4809 0.5966 31 1 0.7116 -5.2631 -0.0697 32 1 2.0154 -5.5598 1.1207 33 1 -0.0938 -6.5857 0.9192 34 1 0.3891 -9.9615 3.4816 35 1 0.7214 -9.2043 6.4013 36 1 0.7528 -6.8427 7.5052 37 1 0.9125 -2.0600 2.0986 38 1 -0.5716 -2.4225 1.1766 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823528083.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:53 Heat of formation + Delta-G solvation = -108.273184 kcal Electronic energy + Delta-G solvation = -26705.269588 eV Core-core repulsion = 22621.216817 eV Total energy + Delta-G solvation = -4084.052770 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.105 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.97178 -43.61905 -41.25965 -39.16279 -38.41737 -36.20791 -34.19562 -34.05344 -32.05980 -31.23497 -30.56262 -29.57791 -27.35155 -25.60393 -24.04492 -23.56962 -22.79253 -21.48834 -20.68017 -19.27010 -19.07247 -18.73468 -18.02377 -17.52355 -17.48299 -17.23564 -16.64679 -16.52528 -16.41957 -16.17650 -15.82884 -15.04277 -14.84536 -14.82273 -14.61927 -14.16152 -13.90326 -13.84013 -13.65551 -13.49916 -13.44634 -12.93554 -12.90101 -12.64848 -12.53907 -12.31827 -12.24055 -12.13423 -11.42392 -11.22972 -11.15514 -10.67031 -10.32431 -9.78971 -9.64616 -9.39712 -8.30131 -6.45930 -0.67917 -0.06308 1.13514 1.38977 1.42382 1.53141 1.60967 1.72946 1.85944 2.34036 2.36668 2.89860 2.96468 3.13804 3.47135 3.69952 3.71849 3.79009 3.98390 4.04709 4.14731 4.25105 4.27930 4.42911 4.51073 4.61766 4.64957 4.70697 4.80423 4.93116 4.94381 5.05981 5.16725 5.31761 5.36982 5.44313 5.46428 5.72085 5.99782 6.02255 6.44380 6.61725 6.92973 7.26253 7.35661 8.76474 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.019578 B = 0.003700 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.869894 B = 7565.033436 C = 8504.810235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.026 3.974 3 Si 0.965 3.035 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.284 1.284 7 C -0.558 4.558 8 H 0.069 0.931 9 C 0.235 3.765 10 O -0.587 6.587 11 C -0.113 4.113 12 C 0.101 3.899 13 N -0.605 5.605 14 C 0.558 3.442 15 O -0.583 6.583 16 C -0.102 4.102 17 C -0.092 4.092 18 C 0.079 3.921 19 F -0.129 7.129 20 C -0.065 4.065 21 C -0.116 4.116 22 C -0.199 4.199 23 C 0.010 3.990 24 O -0.211 6.211 25 C 0.061 3.939 26 C 0.118 3.882 27 H 0.272 0.728 28 H 0.379 0.621 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.160 0.840 34 H 0.184 0.816 35 H 0.205 0.795 36 H 0.252 0.748 37 H 0.035 0.965 38 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.021 -20.278 8.498 22.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.175 4.175 3 Si 0.790 3.210 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.210 1.210 7 C -0.596 4.596 8 H 0.087 0.913 9 C 0.195 3.805 10 O -0.396 6.396 11 C -0.150 4.150 12 C -0.020 4.020 13 N -0.336 5.336 14 C 0.348 3.652 15 O -0.465 6.465 16 C -0.106 4.106 17 C -0.112 4.112 18 C 0.060 3.940 19 F -0.107 7.107 20 C -0.084 4.084 21 C -0.118 4.118 22 C -0.218 4.218 23 C -0.054 4.054 24 O -0.112 6.112 25 C 0.012 3.988 26 C -0.005 4.005 27 H 0.081 0.919 28 H 0.230 0.770 29 H 0.115 0.885 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.117 0.883 33 H 0.177 0.823 34 H 0.201 0.799 35 H 0.222 0.778 36 H 0.268 0.732 37 H 0.053 0.947 38 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 2.891 -20.105 8.846 22.155 hybrid contribution -0.427 1.950 -0.051 1.997 sum 2.465 -18.155 8.796 20.323 Atomic orbital electron populations 1.69681 1.07153 1.28569 1.50370 1.25825 0.95811 1.02887 0.92970 0.85396 0.79142 0.78866 0.77589 1.18836 1.20122 1.21031 1.21896 0.94068 0.91322 1.52314 0.91299 1.19670 0.86301 0.93622 0.80913 1.86056 1.51400 1.53052 1.49086 1.22781 0.97090 0.93327 1.01832 1.22714 0.94006 0.95642 0.89628 1.48734 1.51954 1.11301 1.21656 1.18286 0.78620 0.87893 0.80436 1.90757 1.46648 1.64846 1.44250 1.18383 1.09942 0.91786 0.90439 1.21308 0.99037 0.91851 0.98962 1.17070 1.05869 0.86746 0.84345 1.91545 1.93922 1.71184 1.54088 1.20876 0.97148 1.02312 0.88063 1.19995 1.04925 0.90607 0.96227 1.22915 1.08942 1.00569 0.89343 1.25123 0.99163 0.85887 0.95223 1.84147 1.74262 1.38260 1.14538 1.19591 1.01842 0.92325 0.85067 1.22648 0.99544 0.79144 0.99193 0.91894 0.77003 0.88540 0.89880 0.89794 0.88345 0.82267 0.79870 0.77787 0.73231 0.94664 0.94718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.12 10.98 21.45 0.24 -49.88 16 2 C 0.03 1.35 5.28 84.65 0.45 1.80 16 3 Si 0.96 42.21 29.54 68.60 2.03 44.23 16 4 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 5 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 6 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 7 C -0.56 -29.38 8.11 25.60 0.21 -29.17 16 8 H 0.07 3.53 7.76 -2.91 -0.02 3.50 16 9 C 0.24 11.46 0.86 -10.35 -0.01 11.45 16 10 O -0.59 -29.68 13.09 -148.98 -1.95 -31.63 16 11 C -0.11 -4.31 6.22 31.99 0.20 -4.11 16 12 C 0.10 3.42 5.19 86.85 0.45 3.87 16 13 N -0.61 -25.76 3.33 -815.36 -2.71 -28.47 16 14 C 0.56 24.08 7.50 86.71 0.65 24.73 16 15 O -0.58 -30.19 17.10 -4.00 -0.07 -30.26 16 16 C -0.10 -3.40 5.43 -20.05 -0.11 -3.51 16 17 C -0.09 -2.46 8.13 22.61 0.18 -2.28 16 18 C 0.08 1.71 7.28 22.31 0.16 1.88 16 19 F -0.13 -2.69 17.26 44.97 0.78 -1.92 16 20 C -0.07 -1.17 10.06 22.53 0.23 -0.94 16 21 C -0.12 -2.52 6.39 -20.22 -0.13 -2.65 16 22 C -0.20 -2.94 11.15 23.56 0.26 -2.68 16 23 C 0.01 0.17 11.96 66.85 0.80 0.97 16 24 O -0.21 -6.43 10.44 -7.21 -0.08 -6.51 16 25 C 0.06 1.87 6.99 23.28 0.16 2.03 16 26 C 0.12 5.97 5.54 86.73 0.48 6.45 16 27 H 0.27 14.14 8.31 -92.70 -0.77 13.37 16 28 H 0.38 20.22 6.98 -74.06 -0.52 19.70 16 29 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16 30 H 0.08 3.07 8.03 -2.39 -0.02 3.05 16 31 H 0.08 2.59 6.90 -2.38 -0.02 2.58 16 32 H 0.10 2.70 7.26 -2.38 -0.02 2.68 16 33 H 0.16 4.07 5.69 -2.91 -0.02 4.05 16 34 H 0.18 1.83 8.06 -2.91 -0.02 1.80 16 35 H 0.21 1.20 8.06 -2.91 -0.02 1.17 16 36 H 0.25 1.77 8.06 -2.91 -0.02 1.75 16 37 H 0.03 1.97 7.82 -2.39 -0.02 1.95 16 38 H 0.03 1.94 8.07 -2.39 -0.02 1.92 16 Total: -1.00 -71.85 328.26 2.83 -69.02 By element: Atomic # 1 Polarization: 26.97 SS G_CDS: 0.61 Total: 27.58 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: 3.99 Total: 7.83 kcal Atomic # 7 Polarization: -75.88 SS G_CDS: -2.48 Total: -78.36 kcal Atomic # 8 Polarization: -66.30 SS G_CDS: -2.09 Total: -68.39 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.78 Total: -1.92 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.23 kcal Total: -71.85 2.83 -69.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823528083.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.252 kcal (2) G-P(sol) polarization free energy of solvation -71.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds