Wall clock time and date at job start Tue Mar 31 2020 13:10:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17394 * 1
3 3 C 1.47199 * 179.97438 * 2 1
4 4 H 1.09001 * 109.47242 * 324.26262 * 3 2 1
5 5 N 1.46502 * 109.47181 * 204.26409 * 3 2 1
6 6 S 1.65605 * 119.99988 * 94.99426 * 5 3 2
7 7 O 1.42104 * 104.27580 * 181.07266 * 6 5 3
8 8 O 1.42094 * 104.27780 * 308.93696 * 6 5 3
9 9 C 1.81403 * 104.44627 * 65.00697 * 6 5 3
10 10 C 1.52992 * 109.47242 * 173.77431 * 9 6 5
11 11 C 1.50704 * 115.55306 * 65.26787 * 10 9 6
12 12 H 1.08004 * 119.99323 * 268.55218 * 11 10 9
13 13 C 1.37870 * 120.00030 * 88.54666 * 11 10 9
14 14 N 1.31519 * 119.99890 * 174.70470 * 13 11 10
15 15 Si 1.86800 * 120.00176 * 354.70626 * 13 11 10
16 16 H 1.48502 * 109.47015 * 92.55030 * 15 13 11
17 17 H 1.48498 * 109.46933 * 212.55175 * 15 13 11
18 18 H 1.48500 * 109.47222 * 332.55178 * 15 13 11
19 19 C 1.52999 * 117.49959 * 279.59891 * 10 9 6
20 20 C 1.52999 * 117.50013 * 210.94009 * 10 9 6
21 21 C 1.50698 * 109.47573 * 84.26347 * 3 2 1
22 22 C 1.38241 * 119.99616 * 79.72313 * 21 3 2
23 23 C 1.38237 * 119.99631 * 179.79137 * 22 21 3
24 24 C 1.38240 * 119.99787 * 0.44538 * 23 22 21
25 25 C 1.38228 * 120.00175 * 359.80548 * 24 23 22
26 26 C 1.38231 * 120.00337 * 260.00356 * 21 3 2
27 27 H 4.18739 * 15.03897 * 0.02562 * 4 2 1
28 28 H 0.96997 * 119.99766 * 275.00149 * 5 3 2
29 29 H 1.09008 * 109.46671 * 293.77283 * 9 6 5
30 30 H 1.08996 * 109.47533 * 53.76833 * 9 6 5
31 31 H 0.96998 * 120.00228 * 180.02562 * 14 13 11
32 32 H 1.09008 * 117.49518 * 359.97438 * 19 10 9
33 33 H 1.08997 * 117.50670 * 145.01714 * 19 10 9
34 34 H 1.09005 * 117.49803 * 214.97773 * 20 10 9
35 35 H 1.08998 * 117.49855 * 359.96988 * 20 10 9
36 36 H 1.07992 * 120.00358 * 359.97438 * 22 21 3
37 37 H 1.07996 * 120.00034 * 180.27112 * 23 22 21
38 38 H 1.07999 * 119.99341 * 179.83851 * 24 23 22
39 39 H 1.08005 * 120.00101 * 179.97438 * 25 24 23
40 40 H 1.08002 * 119.99673 * 359.97371 * 26 21 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1739 0.0000 0.0000
3 6 2.6459 0.0007 0.0000
4 1 3.0097 -0.8333 0.6002
5 7 3.1337 1.2601 0.5676
6 16 3.5274 1.3469 2.1738
7 8 3.9269 2.6973 2.3642
8 8 2.3906 0.8179 2.8424
9 6 4.9471 0.2319 2.3527
10 6 5.5063 0.3419 3.7725
11 6 4.5888 -0.1301 4.8709
12 1 3.9209 0.5679 5.3538
13 6 4.6020 -1.4530 5.2592
14 7 3.8789 -1.8442 6.2858
15 14 5.6469 -2.6896 4.3273
16 1 6.9785 -2.8003 4.9752
17 1 4.9770 -4.0148 4.3428
18 1 5.8157 -2.2366 2.9232
19 6 6.4255 1.5257 4.0800
20 6 7.0077 0.1152 3.9600
21 6 3.1484 -0.1411 -1.4136
22 6 3.1770 0.9588 -2.2506
23 6 3.6420 0.8296 -3.5460
24 6 4.0698 -0.4013 -4.0073
25 6 4.0363 -1.5022 -3.1720
26 6 3.5754 -1.3722 -1.8753
27 1 -1.0500 -0.0009 0.0001
28 1 3.2260 2.0431 0.0026
29 1 4.6292 -0.7939 2.1659
30 1 5.7196 0.5092 1.6355
31 1 3.8884 -2.7748 6.5592
32 1 6.6322 2.2259 3.2705
33 1 6.3670 1.9629 5.0767
34 1 7.3319 -0.3752 4.8780
35 1 7.5970 -0.1129 3.0719
36 1 2.8388 1.9195 -1.8915
37 1 3.6684 1.6898 -4.1985
38 1 4.4306 -0.5027 -5.0201
39 1 4.3701 -2.4640 -3.5325
40 1 3.5492 -2.2323 -1.2227
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000827906344.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:10:00
Heat of formation + Delta-G solvation = 42.702348 kcal
Electronic energy + Delta-G solvation = -24615.098697 eV
Core-core repulsion = 21103.805893 eV
Total energy + Delta-G solvation = -3511.292804 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 319.103 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-39.72386 -37.15656 -36.55322 -36.11274 -35.17581 -32.18373 -32.13527 -31.22827
-30.84415 -28.56553 -26.24270 -25.54962 -22.85531 -21.84380 -21.73343 -19.71963
-18.89158 -18.44357 -17.67154 -16.91028 -16.57595 -15.97944 -15.38537 -15.29892
-15.14549 -14.92361 -14.45660 -14.12726 -13.87017 -13.59630 -13.37692 -13.00938
-12.79841 -12.65885 -12.36771 -11.74722 -11.60781 -11.44774 -11.28138 -11.26072
-11.21843 -10.95906 -10.67734 -10.43132 -10.38816 -10.23400 -10.14063 -9.85988
-9.60469 -9.17923 -9.13394 -9.02079 -8.67987 -8.49440 -6.18275 -4.25941
0.81734 1.09441 1.18850 2.72704 2.90978 3.20250 3.30038 3.31543
3.45827 3.57990 4.29215 4.33279 4.37609 4.61067 4.64341 4.78046
4.81186 4.86580 4.91046 4.98059 5.06023 5.24201 5.28669 5.41463
5.66101 5.67582 5.76305 5.84897 5.94214 5.97531 6.01890 6.16295
6.22453 6.28710 6.38556 6.41423 6.62957 6.74899 6.85085 7.03028
7.05076 7.57723 7.70372 8.35411 8.87282 9.42663 10.93223
Molecular weight = 319.10amu
Principal moments of inertia in cm(-1)
A = 0.014018 B = 0.004787 C = 0.004569
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1996.934428 B = 5847.253484 C = 6126.296973
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.172 4.172
2 C -0.196 4.196
3 C 0.309 3.691
4 H 0.113 0.887
5 N -1.122 6.122
6 S 2.608 3.392
7 O -0.964 6.964
8 O -0.930 6.930
9 C -0.576 4.576
10 C 0.001 3.999
11 C -0.510 4.510
12 H 0.087 0.913
13 C 0.089 3.911
14 N -0.882 5.882
15 Si 0.872 3.128
16 H -0.275 1.275
17 H -0.290 1.290
18 H -0.256 1.256
19 C -0.177 4.177
20 C -0.184 4.184
21 C -0.085 4.085
22 C -0.103 4.103
23 C -0.119 4.119
24 C -0.119 4.119
25 C -0.117 4.117
26 C -0.106 4.106
27 H 0.219 0.781
28 H 0.412 0.588
29 H 0.125 0.875
30 H 0.110 0.890
31 H 0.267 0.733
32 H 0.082 0.918
33 H 0.096 0.904
34 H 0.093 0.907
35 H 0.075 0.925
36 H 0.124 0.876
37 H 0.124 0.876
38 H 0.122 0.878
39 H 0.125 0.875
40 H 0.128 0.872
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.414 1.622 -20.474 20.543
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C -0.198 4.198
3 C 0.201 3.799
4 H 0.131 0.869
5 N -0.877 5.877
6 S 2.704 3.296
7 O -0.954 6.954
8 O -0.920 6.920
9 C -0.708 4.708
10 C -0.002 4.002
11 C -0.546 4.546
12 H 0.105 0.895
13 C -0.116 4.116
14 N -0.517 5.517
15 Si 0.699 3.301
16 H -0.201 1.201
17 H -0.216 1.216
18 H -0.181 1.181
19 C -0.214 4.214
20 C -0.223 4.223
21 C -0.086 4.086
22 C -0.121 4.121
23 C -0.137 4.137
24 C -0.137 4.137
25 C -0.136 4.136
26 C -0.124 4.124
27 H 0.236 0.764
28 H 0.246 0.754
29 H 0.143 0.857
30 H 0.128 0.872
31 H 0.077 0.923
32 H 0.100 0.900
33 H 0.114 0.886
34 H 0.111 0.889
35 H 0.094 0.906
36 H 0.141 0.859
37 H 0.142 0.858
38 H 0.140 0.860
39 H 0.143 0.857
40 H 0.146 0.854
Dipole moment (debyes) X Y Z Total
from point charges -0.125 1.850 -19.570 19.658
hybrid contribution 0.858 -0.976 -0.968 1.621
sum 0.733 0.873 -20.538 20.570
Atomic orbital electron populations
1.24873 0.95771 0.98536 0.99824 1.22993 0.94122 1.01755 1.00928
1.16183 0.84121 0.87384 0.92165 0.86925 1.56315 1.81795 1.17879
1.31664 1.05240 0.77081 0.75701 0.71573 1.93528 1.84881 1.33382
1.83632 1.93610 1.46689 1.80823 1.70867 1.30314 1.18238 1.16013
1.06263 1.18850 0.90573 1.01014 0.89774 1.20339 1.21680 0.95785
1.16842 0.89512 1.24946 0.94584 0.98027 0.94018 1.69895 1.39681
1.17214 1.24876 0.86949 0.80667 0.80545 0.81889 1.20072 1.21639
1.18054 1.23031 1.05423 0.90435 1.02504 1.22989 0.97120 1.00282
1.01887 1.19766 0.99867 0.94428 0.94561 1.20951 0.99075 0.98405
0.93669 1.21133 0.99181 0.97724 0.95661 1.21194 0.99736 0.92990
0.99752 1.21135 0.99737 0.98940 0.93739 1.21092 0.98198 0.96757
0.96361 0.76412 0.75364 0.85665 0.87185 0.92268 0.89982 0.88585
0.88880 0.90622 0.85854 0.85841 0.86027 0.85736 0.85362
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.33 19.25 29.55 0.57 -1.76 16
2 C -0.20 -2.96 12.77 -37.12 -0.47 -3.44 16
3 C 0.31 4.35 2.72 -71.87 -0.20 4.15 16
4 H 0.11 1.54 7.15 -51.93 -0.37 1.17 16
5 N -1.12 -16.55 5.27 -8.32 -0.04 -16.60 16
6 S 2.61 51.19 5.12 -107.50 -0.55 50.64 16
7 O -0.96 -20.47 18.08 -57.54 -1.04 -21.51 16
8 O -0.93 -22.22 17.40 -57.54 -1.00 -23.22 16
9 C -0.58 -11.08 5.38 37.15 0.20 -10.88 16
10 C 0.00 0.02 0.79 -155.66 -0.12 -0.11 16
11 C -0.51 -14.13 8.78 -34.44 -0.30 -14.44 16
12 H 0.09 2.68 8.06 -52.48 -0.42 2.26 16
13 C 0.09 2.51 5.47 -17.82 -0.10 2.42 16
14 N -0.88 -26.56 13.96 55.43 0.77 -25.79 16
15 Si 0.87 20.67 24.96 -169.99 -4.24 16.43 16
16 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16
17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16
18 H -0.26 -5.50 5.68 56.52 0.32 -5.18 16
19 C -0.18 -3.62 9.96 -26.70 -0.27 -3.89 16
20 C -0.18 -3.77 7.67 -26.70 -0.20 -3.98 16
21 C -0.08 -1.00 4.92 -104.62 -0.51 -1.51 16
22 C -0.10 -1.08 9.14 -39.58 -0.36 -1.44 16
23 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16
24 C -0.12 -1.02 10.05 -39.58 -0.40 -1.41 16
25 C -0.12 -1.07 10.05 -39.59 -0.40 -1.47 16
26 C -0.11 -1.12 9.67 -39.59 -0.38 -1.51 16
27 H 0.22 2.09 7.80 -54.09 -0.42 1.67 16
28 H 0.41 5.03 7.06 -34.48 -0.24 4.79 16
29 H 0.13 2.33 6.03 -51.92 -0.31 2.02 16
30 H 0.11 1.70 8.09 -51.93 -0.42 1.28 16
31 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16
32 H 0.08 1.49 8.14 -51.92 -0.42 1.07 16
33 H 0.10 1.98 8.14 -51.93 -0.42 1.56 16
34 H 0.09 1.99 7.34 -51.93 -0.38 1.61 16
35 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16
36 H 0.12 1.16 6.84 -52.49 -0.36 0.80 16
37 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16
38 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16
39 H 0.12 0.87 8.06 -52.48 -0.42 0.44 16
40 H 0.13 1.21 8.04 -52.49 -0.42 0.78 16
LS Contribution 354.64 15.07 5.34 5.34
Total: -1.00 -35.58 354.64 -9.21 -44.79
By element:
Atomic # 1 Polarization: 15.74 SS G_CDS: -5.11 Total: 10.64 kcal
Atomic # 6 Polarization: -37.38 SS G_CDS: -3.35 Total: -40.72 kcal
Atomic # 7 Polarization: -43.11 SS G_CDS: 0.73 Total: -42.38 kcal
Atomic # 8 Polarization: -42.69 SS G_CDS: -2.04 Total: -44.73 kcal
Atomic # 14 Polarization: 20.67 SS G_CDS: -4.24 Total: 16.43 kcal
Atomic # 16 Polarization: 51.19 SS G_CDS: -0.55 Total: 50.64 kcal
Total LS contribution 5.34 Total: 5.34 kcal
Total: -35.58 -9.21 -44.79 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000827906344.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 87.494 kcal
(2) G-P(sol) polarization free energy of solvation -35.579 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.915 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.213 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.792 kcal
(6) G-S(sol) free energy of system = (1) + (5) 42.702 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds