Wall clock time and date at job start Tue Mar 31 2020 13:09:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17394 * 1
3 3 C 1.47199 * 179.97438 * 2 1
4 4 H 1.09001 * 109.47242 * 324.26262 * 3 2 1
5 5 N 1.46502 * 109.47181 * 204.26409 * 3 2 1
6 6 S 1.65605 * 119.99988 * 94.99426 * 5 3 2
7 7 O 1.42104 * 104.27580 * 181.07266 * 6 5 3
8 8 O 1.42094 * 104.27780 * 308.93696 * 6 5 3
9 9 C 1.81403 * 104.44627 * 65.00697 * 6 5 3
10 10 C 1.52992 * 109.47242 * 173.77431 * 9 6 5
11 11 C 1.50704 * 115.55306 * 65.26787 * 10 9 6
12 12 H 1.08004 * 119.99323 * 268.55218 * 11 10 9
13 13 C 1.37870 * 120.00030 * 88.54666 * 11 10 9
14 14 N 1.31519 * 119.99890 * 174.70470 * 13 11 10
15 15 Si 1.86800 * 120.00176 * 354.70626 * 13 11 10
16 16 H 1.48502 * 109.47015 * 92.55030 * 15 13 11
17 17 H 1.48498 * 109.46933 * 212.55175 * 15 13 11
18 18 H 1.48500 * 109.47222 * 332.55178 * 15 13 11
19 19 C 1.52999 * 117.49959 * 279.59891 * 10 9 6
20 20 C 1.52999 * 117.50013 * 210.94009 * 10 9 6
21 21 C 1.50698 * 109.47573 * 84.26347 * 3 2 1
22 22 C 1.38241 * 119.99616 * 79.72313 * 21 3 2
23 23 C 1.38237 * 119.99631 * 179.79137 * 22 21 3
24 24 C 1.38240 * 119.99787 * 0.44538 * 23 22 21
25 25 C 1.38228 * 120.00175 * 359.80548 * 24 23 22
26 26 C 1.38231 * 120.00337 * 260.00356 * 21 3 2
27 27 H 4.18739 * 15.03897 * 0.02562 * 4 2 1
28 28 H 0.96997 * 119.99766 * 275.00149 * 5 3 2
29 29 H 1.09008 * 109.46671 * 293.77283 * 9 6 5
30 30 H 1.08996 * 109.47533 * 53.76833 * 9 6 5
31 31 H 0.96998 * 120.00228 * 180.02562 * 14 13 11
32 32 H 1.09008 * 117.49518 * 359.97438 * 19 10 9
33 33 H 1.08997 * 117.50670 * 145.01714 * 19 10 9
34 34 H 1.09005 * 117.49803 * 214.97773 * 20 10 9
35 35 H 1.08998 * 117.49855 * 359.96988 * 20 10 9
36 36 H 1.07992 * 120.00358 * 359.97438 * 22 21 3
37 37 H 1.07996 * 120.00034 * 180.27112 * 23 22 21
38 38 H 1.07999 * 119.99341 * 179.83851 * 24 23 22
39 39 H 1.08005 * 120.00101 * 179.97438 * 25 24 23
40 40 H 1.08002 * 119.99673 * 359.97371 * 26 21 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1739 0.0000 0.0000
3 6 2.6459 0.0007 0.0000
4 1 3.0097 -0.8333 0.6002
5 7 3.1337 1.2601 0.5676
6 16 3.5274 1.3469 2.1738
7 8 3.9269 2.6973 2.3642
8 8 2.3906 0.8179 2.8424
9 6 4.9471 0.2319 2.3527
10 6 5.5063 0.3419 3.7725
11 6 4.5888 -0.1301 4.8709
12 1 3.9209 0.5679 5.3538
13 6 4.6020 -1.4530 5.2592
14 7 3.8789 -1.8442 6.2858
15 14 5.6469 -2.6896 4.3273
16 1 6.9785 -2.8003 4.9752
17 1 4.9770 -4.0148 4.3428
18 1 5.8157 -2.2366 2.9232
19 6 6.4255 1.5257 4.0800
20 6 7.0077 0.1152 3.9600
21 6 3.1484 -0.1411 -1.4136
22 6 3.1770 0.9588 -2.2506
23 6 3.6420 0.8296 -3.5460
24 6 4.0698 -0.4013 -4.0073
25 6 4.0363 -1.5022 -3.1720
26 6 3.5754 -1.3722 -1.8753
27 1 -1.0500 -0.0009 0.0001
28 1 3.2260 2.0431 0.0026
29 1 4.6292 -0.7939 2.1659
30 1 5.7196 0.5092 1.6355
31 1 3.8884 -2.7748 6.5592
32 1 6.6322 2.2259 3.2705
33 1 6.3670 1.9629 5.0767
34 1 7.3319 -0.3752 4.8780
35 1 7.5970 -0.1129 3.0719
36 1 2.8388 1.9195 -1.8915
37 1 3.6684 1.6898 -4.1985
38 1 4.4306 -0.5027 -5.0201
39 1 4.3701 -2.4640 -3.5325
40 1 3.5492 -2.2323 -1.2227
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000827906344.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:09:59
Heat of formation + Delta-G solvation = 17.299757 kcal
Electronic energy + Delta-G solvation = -24616.200236 eV
Core-core repulsion = 21103.805893 eV
Total energy + Delta-G solvation = -3512.394343 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 319.103 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-40.49120 -38.86631 -38.08811 -37.24499 -36.83505 -34.29653 -33.25701 -31.96958
-31.62352 -30.14190 -27.62756 -27.21387 -23.57615 -23.34728 -22.60825 -21.41529
-20.38001 -19.62596 -18.86083 -18.50332 -17.99286 -17.08683 -16.96157 -16.80118
-16.09971 -16.02939 -15.86189 -15.53074 -15.00733 -14.83072 -14.62197 -14.28916
-14.21008 -13.95521 -13.63020 -13.24208 -13.05365 -12.99771 -12.93284 -12.68491
-12.41687 -12.40024 -12.05333 -11.95413 -11.84166 -11.70244 -11.53568 -11.20401
-11.00840 -10.96615 -10.72507 -10.20061 -9.82188 -9.74607 -8.32129 -6.45799
-0.69194 0.34772 0.50172 1.36028 1.36950 1.50091 1.54491 1.83942
2.18209 2.35900 2.78013 2.86428 2.99637 3.13729 3.29568 3.46917
3.69830 3.76298 3.81839 4.05732 4.15875 4.17062 4.31291 4.32181
4.36243 4.47223 4.60683 4.63223 4.80998 4.85709 4.95746 5.00866
5.05866 5.16027 5.19844 5.45001 5.55693 5.61129 5.62080 5.63180
5.95638 6.08866 6.19322 6.63352 6.65732 7.27026 8.84249
Molecular weight = 319.10amu
Principal moments of inertia in cm(-1)
A = 0.014018 B = 0.004787 C = 0.004569
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1996.934428 B = 5847.253484 C = 6126.296973
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C -0.237 4.237
3 C 0.302 3.698
4 H 0.111 0.889
5 N -1.103 6.103
6 S 2.614 3.386
7 O -0.988 6.988
8 O -0.987 6.987
9 C -0.569 4.569
10 C -0.034 4.034
11 C -0.514 4.514
12 H 0.027 0.973
13 C 0.026 3.974
14 N -0.942 5.942
15 Si 0.931 3.069
16 H -0.262 1.262
17 H -0.294 1.294
18 H -0.211 1.211
19 C -0.174 4.174
20 C -0.165 4.165
21 C -0.098 4.098
22 C -0.116 4.116
23 C -0.121 4.121
24 C -0.117 4.117
25 C -0.120 4.120
26 C -0.119 4.119
27 H 0.250 0.750
28 H 0.424 0.576
29 H 0.134 0.866
30 H 0.161 0.839
31 H 0.268 0.732
32 H 0.113 0.887
33 H 0.080 0.920
34 H 0.080 0.920
35 H 0.120 0.880
36 H 0.126 0.874
37 H 0.146 0.854
38 H 0.148 0.852
39 H 0.147 0.853
40 H 0.134 0.866
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.890 0.945 -24.676 24.863
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.187 4.187
2 C -0.238 4.238
3 C 0.196 3.804
4 H 0.129 0.871
5 N -0.862 5.862
6 S 2.712 3.288
7 O -0.978 6.978
8 O -0.977 6.977
9 C -0.702 4.702
10 C -0.037 4.037
11 C -0.551 4.551
12 H 0.045 0.955
13 C -0.173 4.173
14 N -0.580 5.580
15 Si 0.753 3.247
16 H -0.187 1.187
17 H -0.221 1.221
18 H -0.133 1.133
19 C -0.211 4.211
20 C -0.204 4.204
21 C -0.099 4.099
22 C -0.134 4.134
23 C -0.139 4.139
24 C -0.135 4.135
25 C -0.138 4.138
26 C -0.138 4.138
27 H 0.266 0.734
28 H 0.261 0.739
29 H 0.152 0.848
30 H 0.179 0.821
31 H 0.077 0.923
32 H 0.131 0.869
33 H 0.098 0.902
34 H 0.099 0.901
35 H 0.138 0.862
36 H 0.144 0.856
37 H 0.163 0.837
38 H 0.166 0.834
39 H 0.164 0.836
40 H 0.152 0.848
Dipole moment (debyes) X Y Z Total
from point charges 2.349 1.227 -23.793 23.940
hybrid contribution -0.008 -0.668 0.340 0.749
sum 2.341 0.559 -23.453 23.576
Atomic orbital electron populations
1.25793 0.96875 0.97172 0.98848 1.23595 0.95239 1.03036 1.01979
1.16373 0.83849 0.86438 0.93784 0.87119 1.55747 1.81482 1.19128
1.29882 1.04698 0.76776 0.75103 0.72221 1.93480 1.85063 1.34650
1.84606 1.93547 1.49433 1.81542 1.73163 1.30153 1.18829 1.16252
1.04982 1.18770 0.91256 1.03677 0.89972 1.20439 1.21528 0.95032
1.18091 0.95482 1.25966 0.96137 1.00381 0.94829 1.70072 1.42615
1.17788 1.27500 0.86002 0.78799 0.77069 0.82802 1.18711 1.22088
1.13342 1.23117 1.04102 0.91047 1.02884 1.23099 0.94833 0.99292
1.03170 1.19617 1.01435 0.95555 0.93333 1.21105 0.99623 0.98279
0.94425 1.21436 0.98365 0.98908 0.95219 1.21574 0.98597 0.92493
1.00861 1.21439 0.99026 1.00239 0.93080 1.21277 0.98582 0.96521
0.97404 0.73397 0.73858 0.84817 0.82100 0.92261 0.86892 0.90186
0.90148 0.86204 0.85572 0.83662 0.83397 0.83558 0.84822
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -4.53 19.25 74.32 1.43 -3.09 16
2 C -0.24 -7.13 12.77 31.13 0.40 -6.73 16
3 C 0.30 8.28 2.72 42.44 0.12 8.40 16
4 H 0.11 2.97 7.15 -2.39 -0.02 2.96 16
5 N -1.10 -31.64 5.27 -180.22 -0.95 -32.59 16
6 S 2.61 102.59 5.12 -56.49 -0.29 102.30 16
7 O -0.99 -41.93 18.08 -127.65 -2.31 -44.24 16
8 O -0.99 -49.37 17.40 -127.65 -2.22 -51.59 16
9 C -0.57 -20.36 5.38 71.98 0.39 -19.97 16
10 C -0.03 -1.51 0.79 -52.93 -0.04 -1.55 16
11 C -0.51 -29.55 8.78 25.60 0.22 -29.33 16
12 H 0.03 1.81 8.06 -2.91 -0.02 1.79 16
13 C 0.03 1.50 5.47 84.65 0.46 1.96 16
14 N -0.94 -59.71 13.96 21.45 0.30 -59.41 16
15 Si 0.93 41.55 24.96 68.60 1.71 43.26 16
16 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16
17 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16
18 H -0.21 -7.84 5.68 99.48 0.57 -7.28 16
19 C -0.17 -6.80 9.96 30.62 0.30 -6.50 16
20 C -0.17 -6.15 7.67 30.62 0.23 -5.92 16
21 C -0.10 -2.13 4.92 -19.87 -0.10 -2.23 16
22 C -0.12 -2.19 9.14 22.27 0.20 -1.99 16
23 C -0.12 -1.80 10.05 22.27 0.22 -1.57 16
24 C -0.12 -1.56 10.05 22.27 0.22 -1.34 16
25 C -0.12 -1.78 10.05 22.27 0.22 -1.55 16
26 C -0.12 -2.26 9.67 22.27 0.22 -2.04 16
27 H 0.25 4.47 7.80 -4.42 -0.03 4.43 16
28 H 0.42 9.91 7.06 -96.74 -0.68 9.23 16
29 H 0.13 4.57 6.03 -2.39 -0.01 4.56 16
30 H 0.16 4.08 8.09 -2.39 -0.02 4.06 16
31 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16
32 H 0.11 3.70 8.14 -2.38 -0.02 3.68 16
33 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16
34 H 0.08 3.21 7.34 -2.38 -0.02 3.19 16
35 H 0.12 3.45 8.14 -2.39 -0.02 3.43 16
36 H 0.13 2.17 6.84 -2.91 -0.02 2.15 16
37 H 0.15 1.44 8.06 -2.91 -0.02 1.41 16
38 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16
39 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16
40 H 0.13 2.25 8.04 -2.91 -0.02 2.23 16
Total: -1.00 -82.91 354.64 0.98 -81.93
By element:
Atomic # 1 Polarization: 33.56 SS G_CDS: 0.23 Total: 33.78 kcal
Atomic # 6 Polarization: -77.96 SS G_CDS: 4.51 Total: -73.45 kcal
Atomic # 7 Polarization: -91.35 SS G_CDS: -0.65 Total: -92.00 kcal
Atomic # 8 Polarization: -91.30 SS G_CDS: -4.53 Total: -95.83 kcal
Atomic # 14 Polarization: 41.55 SS G_CDS: 1.71 Total: 43.26 kcal
Atomic # 16 Polarization: 102.59 SS G_CDS: -0.29 Total: 102.30 kcal
Total: -82.91 0.98 -81.93 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000827906344.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 99.233 kcal
(2) G-P(sol) polarization free energy of solvation -82.913 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.321 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.979 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.934 kcal
(6) G-S(sol) free energy of system = (1) + (5) 17.300 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds