Wall clock time and date at job start Tue Mar 31 2020 12:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46507 * 110.01772 * 27.30050 * 3 2 1 5 5 S 1.65600 * 119.99929 * 56.50600 * 4 3 2 6 6 O 1.42107 * 106.39910 * 179.48626 * 5 4 3 7 7 O 1.42095 * 106.40548 * 312.40836 * 5 4 3 8 8 C 1.76201 * 107.21398 * 65.95050 * 5 4 3 9 9 C 1.37637 * 120.12617 * 244.86419 * 8 5 4 10 10 C 1.38614 * 120.24814 * 179.72569 * 9 8 5 11 11 C 1.38650 * 120.50139 * 0.55184 * 10 9 8 12 12 C 1.37595 * 120.25042 * 359.72771 * 11 10 9 13 13 C 1.40701 * 120.13124 * 65.14019 * 8 5 4 14 14 C 1.41394 * 120.24332 * 359.97438 * 13 8 5 15 15 H 1.08010 * 119.99857 * 333.75043 * 14 13 8 16 16 C 1.39938 * 120.00154 * 153.75021 * 14 13 8 17 17 N 1.30826 * 120.00108 * 343.46743 * 16 14 13 18 18 Si 1.86800 * 120.00095 * 163.46815 * 16 14 13 19 19 H 1.48507 * 109.47211 * 90.00160 * 18 16 14 20 20 H 1.48494 * 109.47542 * 209.99939 * 18 16 14 21 21 H 1.48497 * 109.47419 * 330.00444 * 18 16 14 22 22 C 1.54264 * 110.03220 * 148.68815 * 3 2 1 23 23 C 1.54966 * 104.15869 * 95.75285 * 22 3 2 24 24 C 1.54893 * 102.77521 * 37.88954 * 23 22 3 25 25 C 1.53868 * 110.03418 * 265.90772 * 3 2 1 26 26 H 4.41746 * 5.46619 * 180.02562 * 4 1 2 27 27 H 0.96996 * 119.99949 * 236.78977 * 4 3 2 28 28 H 1.08005 * 119.87776 * 359.97438 * 9 8 5 29 29 H 1.08003 * 119.75017 * 180.26026 * 10 9 8 30 30 H 1.07999 * 119.87577 * 179.74950 * 11 10 9 31 31 H 1.07996 * 120.13311 * 179.97438 * 12 11 10 32 32 H 0.96998 * 119.99925 * 179.97438 * 17 16 14 33 33 H 1.09001 * 110.49001 * 214.40273 * 22 3 2 34 34 H 1.09004 * 110.48505 * 337.04418 * 22 3 2 35 35 H 1.08993 * 110.72127 * 279.57619 * 23 22 3 36 36 H 1.09004 * 110.92178 * 156.29436 * 23 22 3 37 37 H 1.08998 * 110.48677 * 203.40295 * 24 23 22 38 38 H 1.09000 * 110.48521 * 80.75673 * 24 23 22 39 39 H 1.09004 * 110.03282 * 359.95240 * 25 3 2 40 40 H 1.08997 * 110.03518 * 121.37962 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1480 -1.2223 -0.6314 5 16 2.6880 -1.6060 -2.1752 6 8 3.3442 -2.8245 -2.4983 7 8 1.2769 -1.4463 -2.2249 8 6 3.3657 -0.3780 -3.2417 9 6 2.5328 0.4659 -3.9406 10 6 3.0633 1.4365 -4.7759 11 6 4.4359 1.5618 -4.9263 12 6 5.2875 0.7254 -4.2419 13 6 4.7603 -0.2600 -3.3866 14 6 5.6256 -1.1249 -2.6777 15 1 5.3030 -1.5676 -1.7468 16 6 6.9000 -1.4072 -3.1821 17 7 7.1796 -1.1507 -4.4342 18 14 8.2021 -2.1503 -2.0678 19 1 8.1208 -3.6318 -2.1309 20 1 9.5474 -1.7090 -2.5155 21 1 7.9732 -1.7011 -0.6710 22 6 3.1738 1.2391 -0.7532 23 6 3.4447 2.2764 0.3658 24 6 4.0038 1.4018 1.5155 25 6 3.1730 0.1041 1.4419 26 1 -1.0499 -0.0003 -0.0004 27 1 3.7466 -1.8094 -0.1436 28 1 1.4619 0.3740 -3.8348 29 1 2.4023 2.0972 -5.3173 30 1 4.8382 2.3191 -5.5829 31 1 6.3563 0.8244 -4.3608 32 1 8.0630 -1.3460 -4.7837 33 1 4.0961 0.9994 -1.2824 34 1 2.4210 1.6132 -1.4471 35 1 2.5200 2.7674 0.6686 36 1 4.1834 3.0110 0.0451 37 1 3.8566 1.8951 2.4762 38 1 5.0602 1.1881 1.3531 39 1 2.3388 0.1546 2.1417 40 1 3.8023 -0.7557 1.6720 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882775420.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:26 Heat of formation + Delta-G solvation = -5.894135 kcal Electronic energy + Delta-G solvation = -25991.104700 eV Core-core repulsion = 22477.704594 eV Total energy + Delta-G solvation = -3513.400106 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -38.86956 -37.57018 -36.11976 -34.76066 -33.93353 -33.30278 -31.73933 -30.28132 -29.57832 -28.53516 -26.83978 -25.51728 -21.70695 -21.23464 -21.11121 -20.59562 -18.91779 -17.73635 -17.53798 -16.57671 -16.21358 -15.74836 -15.40424 -15.06694 -14.42784 -14.36544 -14.02768 -13.30850 -13.25655 -13.13900 -12.75899 -12.55154 -11.99097 -11.84500 -11.54110 -11.45608 -11.30201 -11.19301 -11.00481 -10.99227 -10.97078 -10.81605 -10.77593 -10.58892 -10.52880 -10.40332 -9.92718 -9.88921 -9.73422 -9.43739 -9.41313 -8.84110 -7.97583 -7.61160 -7.07560 -4.75172 1.57577 2.36422 2.73239 2.94911 2.97707 3.11155 3.15371 3.23496 3.74916 4.10698 4.38935 4.49946 4.73952 4.81319 4.89445 5.13886 5.33061 5.58246 5.63598 5.66127 5.76431 5.83031 5.93602 6.02651 6.06379 6.08368 6.24190 6.25664 6.27955 6.42752 6.45446 6.63504 6.74596 6.79849 6.96091 7.09296 7.30725 7.50428 7.54603 7.68077 7.82834 7.89747 8.07097 8.28731 8.48520 8.65485 9.86252 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.012163 B = 0.007028 C = 0.006242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.494659 B = 3983.035987 C = 4484.668629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.191 4.191 3 C 0.297 3.703 4 N -1.111 6.111 5 S 2.694 3.306 6 O -0.968 6.968 7 O -0.986 6.986 8 C -0.771 4.771 9 C 0.003 3.997 10 C -0.252 4.252 11 C -0.074 4.074 12 C -0.163 4.163 13 C 0.188 3.812 14 C -0.446 4.446 15 H 0.086 0.914 16 C 0.082 3.918 17 N -0.770 5.770 18 Si 0.910 3.090 19 H -0.262 1.262 20 H -0.273 1.273 21 H -0.255 1.255 22 C -0.140 4.140 23 C -0.120 4.120 24 C -0.123 4.123 25 C -0.114 4.114 26 H 0.213 0.787 27 H 0.413 0.587 28 H 0.106 0.894 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.121 0.879 32 H 0.288 0.712 33 H 0.104 0.896 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.480 4.849 9.566 11.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.193 4.193 3 C 0.208 3.792 4 N -0.866 5.866 5 S 2.792 3.208 6 O -0.959 6.959 7 O -0.977 6.977 8 C -0.866 4.866 9 C -0.017 4.017 10 C -0.273 4.273 11 C -0.093 4.093 12 C -0.182 4.182 13 C 0.183 3.817 14 C -0.473 4.473 15 H 0.104 0.896 16 C -0.140 4.140 17 N -0.393 5.393 18 Si 0.733 3.267 19 H -0.187 1.187 20 H -0.197 1.197 21 H -0.178 1.178 22 C -0.179 4.179 23 C -0.158 4.158 24 C -0.160 4.160 25 C -0.153 4.153 26 H 0.230 0.770 27 H 0.247 0.753 28 H 0.124 0.876 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.139 0.861 32 H 0.099 0.901 33 H 0.122 0.878 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.917 4.151 9.071 10.393 hybrid contribution 1.036 -0.019 0.134 1.044 sum -1.881 4.132 9.205 10.264 Atomic orbital electron populations 1.24634 0.95541 0.99066 0.99782 1.22967 0.93988 1.01263 1.01087 1.17305 0.82779 0.85053 0.94070 1.55965 1.63711 1.33099 1.33793 1.01297 0.72846 0.74321 0.72357 1.93545 1.76331 1.43532 1.82476 1.93480 1.30339 1.87371 1.86463 1.29777 1.02986 1.26411 1.27424 1.20205 0.97143 0.91881 0.92480 1.20447 0.94768 1.04326 1.07733 1.20861 0.93726 0.97457 0.97238 1.21426 0.99279 0.96486 1.01043 1.16930 0.88470 0.88503 0.87785 1.19833 0.98099 1.22209 1.07202 0.89569 1.25945 0.99357 0.93665 0.94999 1.69806 1.22672 1.33583 1.13213 0.86249 0.78816 0.80383 0.81239 1.18712 1.19749 1.17809 1.23173 1.03601 0.93267 0.97853 1.22455 1.00693 0.97483 0.95128 1.22359 0.99957 0.95115 0.98616 1.22411 0.99806 0.99177 0.93913 0.76976 0.75289 0.87632 0.88925 0.88985 0.86080 0.90094 0.87795 0.90446 0.91712 0.91057 0.91602 0.90874 0.90780 0.90393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.71 18.75 29.55 0.55 -2.16 16 2 C -0.19 -3.28 9.60 -37.12 -0.36 -3.64 16 3 C 0.30 4.84 0.97 -133.49 -0.13 4.71 16 4 N -1.11 -20.12 4.67 -0.83 0.00 -20.13 16 5 S 2.69 60.19 4.90 -107.50 -0.53 59.66 16 6 O -0.97 -24.64 16.51 -57.17 -0.94 -25.59 16 7 O -0.99 -22.80 14.32 -57.17 -0.82 -23.62 16 8 C -0.77 -18.07 3.75 -38.87 -0.15 -18.21 16 9 C 0.00 0.06 8.87 -39.66 -0.35 -0.29 16 10 C -0.25 -5.43 10.05 -39.29 -0.39 -5.82 16 11 C -0.07 -1.62 10.02 -39.66 -0.40 -2.02 16 12 C -0.16 -3.90 8.68 -38.87 -0.34 -4.24 16 13 C 0.19 4.62 4.48 -106.82 -0.48 4.14 16 14 C -0.45 -10.87 7.70 -37.75 -0.29 -11.16 16 15 H 0.09 1.97 5.65 -52.48 -0.30 1.68 16 16 C 0.08 1.94 5.15 -17.34 -0.09 1.85 16 17 N -0.77 -18.63 11.00 55.55 0.61 -18.02 16 18 Si 0.91 17.48 29.59 -169.99 -5.03 12.45 16 19 H -0.26 -5.14 7.11 56.52 0.40 -4.73 16 20 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 21 H -0.25 -4.66 7.11 56.52 0.40 -4.25 16 22 C -0.14 -2.33 4.44 -25.03 -0.11 -2.44 16 23 C -0.12 -1.56 6.91 -24.69 -0.17 -1.73 16 24 C -0.12 -1.43 6.83 -25.07 -0.17 -1.60 16 25 C -0.11 -1.46 6.22 -25.62 -0.16 -1.62 16 26 H 0.21 2.53 7.80 -54.10 -0.42 2.11 16 27 H 0.41 6.54 7.92 -34.47 -0.27 6.27 16 28 H 0.11 2.25 7.33 -52.48 -0.38 1.87 16 29 H 0.09 1.76 8.06 -52.48 -0.42 1.33 16 30 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 31 H 0.12 2.94 6.25 -52.49 -0.33 2.61 16 32 H 0.29 6.26 8.30 -40.82 -0.34 5.92 16 33 H 0.10 1.93 6.06 -51.93 -0.31 1.62 16 34 H 0.08 1.37 7.18 -51.93 -0.37 1.00 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.87 7.66 -51.93 -0.40 0.47 16 40 H 0.08 0.90 7.44 -51.93 -0.39 0.52 16 LS Contribution 335.03 15.07 5.05 5.05 Total: -1.00 -30.31 335.03 -9.54 -39.85 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: -4.85 Total: 14.57 kcal Atomic # 6 Polarization: -41.20 SS G_CDS: -3.03 Total: -44.23 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.61 Total: -38.14 kcal Atomic # 8 Polarization: -47.44 SS G_CDS: -1.76 Total: -49.21 kcal Atomic # 14 Polarization: 17.48 SS G_CDS: -5.03 Total: 12.45 kcal Atomic # 16 Polarization: 60.19 SS G_CDS: -0.53 Total: 59.66 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.31 -9.54 -39.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882775420.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.953 kcal (2) G-P(sol) polarization free energy of solvation -30.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds