Wall clock time and date at job start Tue Mar 31 2020 13:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.87220 * 2 1 4 4 C 1.51099 * 109.66937 * 120.74955 * 2 1 3 5 5 O 1.20757 * 120.95047 * 253.53150 * 4 2 1 6 6 C 1.51318 * 118.02883 * 73.67871 * 4 2 1 7 7 C 1.53230 * 108.64836 * 52.44264 * 6 4 2 8 8 C 1.53103 * 109.43353 * 303.82188 * 7 6 4 9 9 N 1.46878 * 109.26626 * 58.37003 * 8 7 6 10 10 C 1.34778 * 120.71466 * 122.88307 * 9 8 7 11 11 O 1.21611 * 119.99603 * 4.28326 * 10 9 8 12 12 C 1.47423 * 120.00095 * 184.27418 * 10 9 8 13 13 C 1.39680 * 120.21616 * 306.79256 * 12 10 9 14 14 C 1.37802 * 119.93724 * 179.97438 * 13 12 10 15 15 C 1.38661 * 120.38393 * 359.97438 * 14 13 12 16 16 C 1.37907 * 120.43496 * 359.97438 * 15 14 13 17 17 C 1.39111 * 120.05199 * 0.02562 * 16 15 14 18 18 S 1.76198 * 120.18737 * 179.97438 * 17 16 15 19 19 C 1.76200 * 100.00411 * 7.88789 * 18 17 16 20 20 H 1.08002 * 119.99716 * 355.71162 * 19 18 17 21 21 C 1.38804 * 120.00265 * 175.70542 * 19 18 17 22 22 N 1.31556 * 120.00036 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 119.99879 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.47535 * 89.99556 * 23 21 19 25 25 H 1.48509 * 109.46979 * 209.99554 * 23 21 19 26 26 H 1.48504 * 109.46922 * 329.99117 * 23 21 19 27 27 H 1.09004 * 109.47056 * 180.91105 * 1 2 3 28 28 H 1.09009 * 109.46929 * 300.90629 * 1 2 3 29 29 H 1.08998 * 109.47561 * 60.90569 * 1 2 3 30 30 H 1.09005 * 109.60590 * 292.69962 * 6 4 2 31 31 H 1.08993 * 109.61331 * 172.19515 * 6 4 2 32 32 H 1.09006 * 109.48055 * 183.83589 * 7 6 4 33 33 H 1.09000 * 109.48621 * 63.82006 * 7 6 4 34 34 H 1.08991 * 109.50695 * 298.43173 * 8 7 6 35 35 H 1.09004 * 109.53784 * 178.32605 * 8 7 6 36 36 H 1.07997 * 120.03124 * 359.97438 * 13 12 10 37 37 H 1.08001 * 119.80817 * 180.02562 * 14 13 12 38 38 H 1.08001 * 119.78214 * 180.02562 * 15 14 13 39 39 H 1.08006 * 119.97483 * 179.74864 * 16 15 14 40 40 H 0.96995 * 120.00160 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0386 -0.7275 1.2228 5 8 2.5240 -0.1224 2.1482 6 6 1.9244 -2.2361 1.2514 7 6 2.5546 -2.7994 -0.0267 8 6 1.8781 -2.1711 -1.2479 9 7 2.0292 -0.7113 -1.1881 10 6 2.6174 -0.0382 -2.1968 11 8 2.9594 -0.6284 -3.2036 12 6 2.8459 1.4135 -2.0797 13 6 1.7885 2.2680 -1.7593 14 6 2.0087 3.6240 -1.6508 15 6 3.2759 4.1475 -1.8576 16 6 4.3314 3.3180 -2.1737 17 6 4.1295 1.9464 -2.2878 18 16 5.4753 0.8834 -2.6921 19 6 6.8100 2.0298 -2.5971 20 1 6.6120 3.0748 -2.4095 21 6 8.1160 1.5898 -2.7632 22 7 9.1125 2.4459 -2.6928 23 14 8.4585 -0.2175 -3.0882 24 1 8.4511 -0.4674 -4.5520 25 1 9.7873 -0.5774 -2.5313 26 1 7.4094 -1.0445 -2.4395 27 1 -0.3633 -1.0276 0.0163 28 1 -0.3633 0.5279 0.8818 29 1 -0.3634 0.4997 -0.8979 30 1 0.8737 -2.5226 1.2981 31 1 2.4515 -2.6264 2.1219 32 1 2.4193 -3.8808 -0.0525 33 1 3.6192 -2.5660 -0.0406 34 1 0.8188 -2.4275 -1.2494 35 1 2.3451 -2.5483 -2.1577 36 1 0.7993 1.8664 -1.5967 37 1 1.1897 4.2827 -1.4025 38 1 3.4376 5.2117 -1.7697 39 1 5.3145 3.7342 -2.3371 40 1 10.0250 2.1385 -2.8092 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885032433.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:35 Heat of formation + Delta-G solvation = -60.576524 kcal Electronic energy + Delta-G solvation = -24919.291414 eV Core-core repulsion = 21403.520103 eV Total energy + Delta-G solvation = -3515.771312 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.94594 -40.41494 -39.18134 -37.58531 -34.90345 -34.46084 -32.22905 -32.03593 -31.92472 -28.32461 -28.08565 -25.69342 -24.49529 -23.77597 -23.27310 -21.63691 -20.30715 -19.28687 -18.56704 -18.01117 -17.50866 -17.30199 -16.62905 -16.51363 -16.30545 -16.08556 -15.82587 -15.29774 -15.23329 -15.09464 -14.50922 -14.45021 -14.04526 -13.80560 -13.73844 -13.50879 -13.26200 -13.18842 -13.12765 -13.02433 -12.69642 -12.46985 -12.29850 -12.15744 -12.01042 -11.56820 -11.47628 -11.30683 -10.82982 -10.65508 -10.56025 -9.90459 -9.64961 -8.78118 -8.65142 -6.39923 0.03243 0.37795 0.71159 0.92521 1.19082 1.31761 1.51313 1.58002 1.91263 2.08729 2.49235 2.68092 2.79964 2.90751 3.41576 3.57575 3.86654 3.89850 3.90123 4.10255 4.15730 4.28843 4.33167 4.44122 4.51669 4.62059 4.66332 4.72001 4.74752 4.86470 4.89345 4.97976 5.05919 5.14243 5.28395 5.31876 5.38746 5.48015 5.54690 5.60719 5.96937 6.06833 6.10515 6.36642 6.76111 7.02890 8.45641 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.012952 B = 0.005472 C = 0.004541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.326232 B = 5115.929913 C = 6164.521125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.076 3.924 3 H 0.104 0.896 4 C 0.354 3.646 5 O -0.487 6.487 6 C -0.160 4.160 7 C -0.125 4.125 8 C 0.099 3.901 9 N -0.596 5.596 10 C 0.569 3.431 11 O -0.555 6.555 12 C -0.164 4.164 13 C -0.069 4.069 14 C -0.138 4.138 15 C -0.077 4.077 16 C -0.163 4.163 17 C -0.052 4.052 18 S -0.046 6.046 19 C -0.560 4.560 20 H 0.086 0.914 21 C 0.055 3.945 22 N -0.902 5.902 23 Si 0.905 3.095 24 H -0.259 1.259 25 H -0.249 1.249 26 H -0.239 1.239 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.146 0.854 31 H 0.093 0.907 32 H 0.126 0.874 33 H 0.039 0.961 34 H 0.118 0.882 35 H 0.079 0.921 36 H 0.163 0.837 37 H 0.172 0.828 38 H 0.150 0.850 39 H 0.115 0.885 40 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.141 -8.053 7.629 25.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.028 4.028 3 H 0.122 0.878 4 C 0.230 3.770 5 O -0.361 6.361 6 C -0.197 4.197 7 C -0.163 4.163 8 C -0.022 4.022 9 N -0.331 5.331 10 C 0.358 3.642 11 O -0.433 6.433 12 C -0.176 4.176 13 C -0.088 4.088 14 C -0.160 4.160 15 C -0.098 4.098 16 C -0.188 4.188 17 C -0.168 4.168 18 S 0.206 5.794 19 C -0.707 4.707 20 H 0.103 0.897 21 C -0.153 4.153 22 N -0.538 5.538 23 Si 0.726 3.274 24 H -0.183 1.183 25 H -0.173 1.173 26 H -0.163 1.163 27 H 0.112 0.888 28 H 0.109 0.891 29 H 0.102 0.898 30 H 0.163 0.837 31 H 0.112 0.888 32 H 0.144 0.856 33 H 0.058 0.942 34 H 0.136 0.864 35 H 0.098 0.902 36 H 0.180 0.820 37 H 0.190 0.810 38 H 0.168 0.832 39 H 0.133 0.867 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -22.212 -9.332 7.260 25.162 hybrid contribution 1.522 1.221 -0.134 1.956 sum -20.689 -8.111 7.126 23.337 Atomic orbital electron populations 1.22155 0.88497 1.05553 1.04786 1.22406 0.99226 0.97850 0.83316 0.87811 1.25640 0.71718 0.93976 0.85640 1.90442 1.34163 1.72552 1.38898 1.22365 1.06388 0.90810 1.00178 1.21919 0.99029 1.03037 0.92358 1.21926 1.03439 0.77294 0.99510 1.48113 1.58867 1.08461 1.17634 1.18319 0.76049 0.87028 0.82839 1.90769 1.51414 1.70167 1.30966 1.19551 0.93808 0.93650 1.10616 1.21533 0.97671 0.93638 0.96004 1.21425 0.97408 0.95002 1.02151 1.21539 0.92348 1.00433 0.95446 1.21484 1.00937 0.92364 1.04022 1.22246 0.96533 0.97613 1.00413 1.83212 0.98174 1.15909 1.82074 1.23062 0.92949 0.97299 1.57396 0.89657 1.25557 0.94726 1.02317 0.92662 1.69955 1.00252 1.36702 1.46912 0.86051 0.80567 0.80273 0.80539 1.18338 1.17280 1.16321 0.88781 0.89080 0.89783 0.83666 0.88815 0.85593 0.94245 0.86439 0.90210 0.81973 0.81025 0.83240 0.86718 0.90902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 8.98 71.98 0.65 -0.95 16 2 C 0.08 1.61 2.39 44.24 0.11 1.71 16 3 H 0.10 2.68 5.03 -2.39 -0.01 2.67 16 4 C 0.35 8.12 6.15 29.42 0.18 8.31 16 5 O -0.49 -15.44 17.90 -1.44 -0.03 -15.46 16 6 C -0.16 -2.27 6.01 30.12 0.18 -2.09 16 7 C -0.13 -2.04 6.09 30.71 0.19 -1.85 16 8 C 0.10 1.89 6.08 86.34 0.52 2.41 16 9 N -0.60 -15.46 2.67 -802.33 -2.14 -17.59 16 10 C 0.57 20.75 6.59 86.66 0.57 21.32 16 11 O -0.55 -24.36 15.41 -4.07 -0.06 -24.42 16 12 C -0.16 -6.19 4.89 -19.95 -0.10 -6.28 16 13 C -0.07 -1.86 7.47 22.51 0.17 -1.69 16 14 C -0.14 -3.42 10.02 22.27 0.22 -3.19 16 15 C -0.08 -2.43 10.03 22.29 0.22 -2.21 16 16 C -0.16 -7.08 9.24 22.40 0.21 -6.87 16 17 C -0.05 -2.42 6.14 23.04 0.14 -2.28 16 18 S -0.05 -2.51 17.85 -56.49 -1.01 -3.52 16 19 C -0.56 -33.75 9.62 67.96 0.65 -33.10 16 20 H 0.09 5.39 5.09 -2.91 -0.01 5.38 16 21 C 0.05 3.25 5.50 84.87 0.47 3.71 16 22 N -0.90 -55.15 13.96 21.65 0.30 -54.84 16 23 Si 0.90 45.01 27.74 68.60 1.90 46.91 16 24 H -0.26 -12.59 7.11 99.48 0.71 -11.88 16 25 H -0.25 -11.45 7.11 99.48 0.71 -10.74 16 26 H -0.24 -11.87 6.74 99.48 0.67 -11.20 16 27 H 0.09 0.54 7.11 -2.39 -0.02 0.52 16 28 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 29 H 0.08 0.78 6.70 -2.39 -0.02 0.77 16 30 H 0.15 0.81 7.87 -2.38 -0.02 0.79 16 31 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.13 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.12 1.22 7.53 -2.39 -0.02 1.20 16 35 H 0.08 1.94 7.00 -2.38 -0.02 1.93 16 36 H 0.16 2.98 5.62 -2.91 -0.02 2.96 16 37 H 0.17 2.57 8.06 -2.91 -0.02 2.54 16 38 H 0.15 3.73 8.06 -2.91 -0.02 3.70 16 39 H 0.12 5.68 4.99 -2.91 -0.01 5.66 16 40 H 0.28 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -82.93 335.59 4.40 -78.53 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: 1.04 Total: 13.45 kcal Atomic # 6 Polarization: -27.44 SS G_CDS: 4.38 Total: -23.06 kcal Atomic # 7 Polarization: -70.60 SS G_CDS: -1.84 Total: -72.44 kcal Atomic # 8 Polarization: -39.80 SS G_CDS: -0.09 Total: -39.89 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.90 Total: 46.91 kcal Atomic # 16 Polarization: -2.51 SS G_CDS: -1.01 Total: -3.52 kcal Total: -82.93 4.40 -78.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885032433.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.958 kcal (2) G-P(sol) polarization free energy of solvation -82.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds