Wall clock time and date at job start Tue Mar 31 2020 12:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38773 * 119.45687 * 2 1 4 4 C 1.36525 * 119.72387 * 179.97438 * 3 2 1 5 5 C 1.50703 * 120.57155 * 179.72593 * 4 3 2 6 6 C 1.41655 * 118.85858 * 359.97438 * 4 3 2 7 7 C 1.40279 * 129.14679 * 179.97438 * 6 4 3 8 8 C 1.33758 * 115.49620 * 180.02562 * 7 6 4 9 9 C 1.46816 * 124.64389 * 179.97438 * 8 7 6 10 10 O 1.21572 * 119.99941 * 0.02562 * 9 8 7 11 11 O 1.34849 * 119.99860 * 180.02562 * 9 8 7 12 12 C 1.45209 * 116.99770 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47075 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.47356 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.47457 * 180.02562 * 14 13 12 16 16 H 1.07997 * 119.99593 * 359.97438 * 15 14 13 17 17 C 1.37870 * 120.00068 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00174 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99985 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46733 * 90.00461 * 19 17 15 21 21 H 1.48502 * 109.47088 * 209.99806 * 19 17 15 22 22 H 1.48490 * 109.47109 * 330.00391 * 19 17 15 23 23 S 1.75478 * 110.71357 * 0.02562 * 8 7 6 24 24 C 1.40182 * 118.12260 * 0.02562 * 6 4 3 25 25 N 1.31282 * 119.46232 * 180.02562 * 2 1 3 26 26 H 1.09002 * 109.47035 * 89.99936 * 1 2 3 27 27 H 1.08998 * 109.47123 * 210.00305 * 1 2 3 28 28 H 1.09003 * 109.46932 * 330.00019 * 1 2 3 29 29 H 1.08001 * 120.14436 * 359.97438 * 3 2 1 30 30 H 1.08997 * 109.47025 * 89.99761 * 5 4 3 31 31 H 1.09002 * 109.47107 * 209.99616 * 5 4 3 32 32 H 1.09000 * 109.47275 * 330.00094 * 5 4 3 33 33 H 1.07992 * 122.24934 * 0.04712 * 7 6 4 34 34 H 1.08998 * 109.47034 * 300.00201 * 12 11 9 35 35 H 1.09003 * 109.46532 * 60.00276 * 12 11 9 36 36 H 1.08994 * 109.47409 * 300.00779 * 13 12 11 37 37 H 1.09007 * 109.47075 * 60.00223 * 13 12 11 38 38 H 1.09002 * 109.47234 * 300.00372 * 14 13 12 39 39 H 1.08994 * 109.46655 * 59.99872 * 14 13 12 40 40 H 0.96994 * 120.00305 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1895 1.2083 0.0000 4 6 3.5548 1.2147 0.0005 5 6 4.3152 2.5158 -0.0057 6 6 4.2442 -0.0227 0.0016 7 6 5.6256 -0.2668 0.0018 8 6 5.9825 -1.5559 0.0024 9 6 7.3693 -2.0380 0.0022 10 8 8.2891 -1.2431 0.0019 11 8 7.6226 -3.3625 0.0024 12 6 9.0173 -3.7668 0.0027 13 6 9.1054 -5.2942 0.0035 14 6 10.5749 -5.7203 0.0045 15 6 10.6617 -7.2248 0.0046 16 1 9.7591 -7.8178 0.0044 17 6 11.8935 -7.8443 0.0060 18 7 12.9927 -7.1222 0.0077 19 14 12.0011 -9.7092 0.0068 20 1 12.0310 -10.2038 -1.3931 21 1 13.2395 -10.1332 0.7082 22 1 10.8185 -10.2729 0.7059 23 16 4.5663 -2.5920 0.0021 24 6 3.4858 -1.2017 0.0016 25 7 2.1528 -1.1430 -0.0005 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 1.6430 2.1399 -0.0004 30 1 4.4981 2.8346 1.0205 31 1 5.2672 2.3778 -0.5184 32 1 3.7304 3.2760 -0.5235 33 1 6.3520 0.5323 0.0019 34 1 9.5095 -3.3745 -0.8871 35 1 9.5090 -3.3744 0.8929 36 1 8.6132 -5.6862 0.8934 37 1 8.6135 -5.6870 -0.8865 38 1 11.0675 -5.3284 -0.8854 39 1 11.0664 -5.3276 0.8945 40 1 13.8592 -7.5579 0.0091 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914623069.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:24 Heat of formation + Delta-G solvation = -55.524567 kcal Electronic energy + Delta-G solvation = -22455.132850 eV Core-core repulsion = 18939.580607 eV Total energy + Delta-G solvation = -3515.552243 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.07008 -40.19765 -37.04842 -36.12396 -34.28188 -34.01479 -32.12563 -31.66348 -28.53938 -28.06249 -26.98333 -24.95931 -23.91904 -22.68050 -21.30575 -20.59654 -20.25742 -18.57002 -17.37140 -16.99964 -16.43396 -16.39577 -16.02788 -15.74263 -15.41067 -14.85674 -14.47153 -14.19193 -13.84823 -13.68497 -13.30278 -13.25890 -13.17455 -13.03473 -12.75286 -12.30822 -12.27609 -12.22140 -11.91573 -11.63988 -11.26024 -10.98317 -10.77903 -10.67188 -10.54042 -10.45861 -10.39080 -9.87746 -9.75427 -9.54138 -9.17579 -9.00928 -8.39139 -8.34555 -6.03927 -4.06961 -0.25431 0.64199 0.83737 1.45125 1.51433 2.62394 2.69776 3.17931 3.31300 3.37444 3.41175 3.85239 4.03394 4.28811 4.33764 4.43304 4.59118 4.76265 4.88905 4.93241 5.05439 5.11995 5.14025 5.29712 5.32086 5.37706 5.43226 5.53212 5.55390 5.58283 5.62701 5.81766 5.96438 6.11835 6.35124 6.51322 6.75325 6.95449 7.34962 7.59077 7.69691 7.70477 7.94207 8.35038 8.99174 9.57390 11.07479 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.029496 B = 0.002119 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.066610 B =13211.842765 C =14124.556037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.179 3.821 3 C -0.184 4.184 4 C 0.018 3.982 5 C -0.124 4.124 6 C -0.147 4.147 7 C -0.030 4.030 8 C -0.214 4.214 9 C 0.534 3.466 10 O -0.495 6.495 11 O -0.351 6.351 12 C 0.070 3.930 13 C -0.110 4.110 14 C 0.024 3.976 15 C -0.521 4.521 16 H 0.058 0.942 17 C 0.056 3.944 18 N -0.894 5.894 19 Si 0.896 3.104 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 S 0.233 5.767 24 C 0.062 3.938 25 N -0.464 5.464 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.143 0.857 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.159 0.841 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.020 0.980 39 H 0.020 0.980 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.952 20.907 0.000 32.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.026 3.974 3 C -0.207 4.207 4 C 0.009 3.991 5 C -0.181 4.181 6 C -0.158 4.158 7 C -0.063 4.063 8 C -0.332 4.332 9 C 0.376 3.624 10 O -0.384 6.384 11 O -0.267 6.267 12 C -0.003 4.003 13 C -0.147 4.147 14 C -0.013 4.013 15 C -0.559 4.559 16 H 0.076 0.924 17 C -0.145 4.145 18 N -0.533 5.533 19 Si 0.723 3.277 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.198 1.198 23 S 0.500 5.500 24 C -0.182 4.182 25 N -0.177 5.177 26 H 0.102 0.898 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.161 0.839 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.176 0.824 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -24.963 18.603 0.004 31.133 hybrid contribution 1.047 1.286 -0.013 1.658 sum -23.916 19.889 -0.009 31.105 Atomic orbital electron populations 1.20799 0.87906 1.04007 1.03628 1.21434 0.97091 0.87508 0.91318 1.21411 0.93877 0.99624 1.05773 1.20022 0.93641 0.93827 0.91631 1.20945 1.00601 0.92939 1.03582 1.18781 0.93300 0.94258 1.09463 1.20019 0.94620 0.96003 0.95640 1.22856 0.96205 0.97798 1.16314 1.19609 0.87185 0.82052 0.73549 1.90883 1.45266 1.56603 1.45677 1.86588 1.33955 1.22991 1.83170 1.23625 0.75728 0.98418 1.02508 1.21794 1.02044 0.88717 1.02178 1.19055 0.87954 0.96540 0.97741 1.21162 0.92369 0.91404 1.51010 0.92389 1.25032 0.95804 0.98476 0.95193 1.69962 0.97534 1.35321 1.50532 0.86536 0.77537 0.85463 0.78140 1.20608 1.21199 1.19797 1.84793 0.90314 1.01499 1.73398 1.24125 0.94532 0.97361 1.02222 1.67113 1.06248 1.29484 1.14808 0.89756 0.89994 0.90125 0.83908 0.89703 0.90393 0.90310 0.82352 0.91124 0.91131 0.91979 0.91981 0.96179 0.96164 0.92888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.52 10.16 36.01 0.37 -0.16 16 2 C 0.18 1.52 6.79 -82.63 -0.56 0.96 16 3 C -0.18 -1.29 9.31 -40.00 -0.37 -1.67 16 4 C 0.02 0.15 5.94 -103.94 -0.62 -0.47 16 5 C -0.12 -0.64 9.88 36.01 0.36 -0.28 16 6 C -0.15 -1.60 5.84 -107.10 -0.63 -2.22 16 7 C -0.03 -0.35 9.27 -40.39 -0.37 -0.72 16 8 C -0.21 -2.88 6.31 -37.69 -0.24 -3.12 16 9 C 0.53 8.63 7.93 34.20 0.27 8.90 16 10 O -0.49 -8.90 16.51 -19.32 -0.32 -9.22 16 11 O -0.35 -6.05 10.03 -40.90 -0.41 -6.46 16 12 C 0.07 1.29 5.48 37.16 0.20 1.49 16 13 C -0.11 -2.28 5.53 -26.73 -0.15 -2.43 16 14 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 15 C -0.52 -14.70 9.11 -34.44 -0.31 -15.02 16 16 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -26.83 13.29 55.43 0.74 -26.10 16 19 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 23 S 0.23 2.92 23.05 -107.50 -2.48 0.44 16 24 C 0.06 0.75 7.66 -16.13 -0.12 0.63 16 25 N -0.46 -5.39 10.29 -7.88 -0.08 -5.47 16 26 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.08 0.21 8.08 -51.93 -0.42 -0.21 16 29 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.41 7.28 -51.93 -0.38 0.03 16 32 H 0.08 0.27 8.09 -51.93 -0.42 -0.15 16 33 H 0.16 1.57 7.38 -52.49 -0.39 1.19 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 35 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 361.88 15.07 5.45 5.45 Total: -1.00 -32.97 361.88 -9.91 -42.87 By element: Atomic # 1 Polarization: -0.67 SS G_CDS: -5.37 Total: -6.04 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: -2.41 Total: -12.10 kcal Atomic # 7 Polarization: -32.23 SS G_CDS: 0.66 Total: -31.57 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.73 Total: -15.68 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -2.48 Total: 0.44 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.97 -9.91 -42.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914623069.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.650 kcal (2) G-P(sol) polarization free energy of solvation -32.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds