Wall clock time and date at job start Tue Mar 31 2020 12:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38773 * 119.45687 * 2 1 4 4 C 1.36525 * 119.72387 * 179.97438 * 3 2 1 5 5 C 1.50703 * 120.57155 * 179.72593 * 4 3 2 6 6 C 1.41655 * 118.85858 * 359.97438 * 4 3 2 7 7 C 1.40279 * 129.14679 * 179.97438 * 6 4 3 8 8 C 1.33758 * 115.49620 * 180.02562 * 7 6 4 9 9 C 1.46816 * 124.64389 * 179.97438 * 8 7 6 10 10 O 1.21572 * 119.99941 * 0.02562 * 9 8 7 11 11 O 1.34849 * 119.99860 * 180.02562 * 9 8 7 12 12 C 1.45209 * 116.99770 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47075 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.47356 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.47457 * 180.02562 * 14 13 12 16 16 H 1.07997 * 119.99593 * 359.97438 * 15 14 13 17 17 C 1.37870 * 120.00068 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00174 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99985 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46733 * 90.00461 * 19 17 15 21 21 H 1.48502 * 109.47088 * 209.99806 * 19 17 15 22 22 H 1.48490 * 109.47109 * 330.00391 * 19 17 15 23 23 S 1.75478 * 110.71357 * 0.02562 * 8 7 6 24 24 C 1.40182 * 118.12260 * 0.02562 * 6 4 3 25 25 N 1.31282 * 119.46232 * 180.02562 * 2 1 3 26 26 H 1.09002 * 109.47035 * 89.99936 * 1 2 3 27 27 H 1.08998 * 109.47123 * 210.00305 * 1 2 3 28 28 H 1.09003 * 109.46932 * 330.00019 * 1 2 3 29 29 H 1.08001 * 120.14436 * 359.97438 * 3 2 1 30 30 H 1.08997 * 109.47025 * 89.99761 * 5 4 3 31 31 H 1.09002 * 109.47107 * 209.99616 * 5 4 3 32 32 H 1.09000 * 109.47275 * 330.00094 * 5 4 3 33 33 H 1.07992 * 122.24934 * 0.04712 * 7 6 4 34 34 H 1.08998 * 109.47034 * 300.00201 * 12 11 9 35 35 H 1.09003 * 109.46532 * 60.00276 * 12 11 9 36 36 H 1.08994 * 109.47409 * 300.00779 * 13 12 11 37 37 H 1.09007 * 109.47075 * 60.00223 * 13 12 11 38 38 H 1.09002 * 109.47234 * 300.00372 * 14 13 12 39 39 H 1.08994 * 109.46655 * 59.99872 * 14 13 12 40 40 H 0.96994 * 120.00305 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1895 1.2083 0.0000 4 6 3.5548 1.2147 0.0005 5 6 4.3152 2.5158 -0.0057 6 6 4.2442 -0.0227 0.0016 7 6 5.6256 -0.2668 0.0018 8 6 5.9825 -1.5559 0.0024 9 6 7.3693 -2.0380 0.0022 10 8 8.2891 -1.2431 0.0019 11 8 7.6226 -3.3625 0.0024 12 6 9.0173 -3.7668 0.0027 13 6 9.1054 -5.2942 0.0035 14 6 10.5749 -5.7203 0.0045 15 6 10.6617 -7.2248 0.0046 16 1 9.7591 -7.8178 0.0044 17 6 11.8935 -7.8443 0.0060 18 7 12.9927 -7.1222 0.0077 19 14 12.0011 -9.7092 0.0068 20 1 12.0310 -10.2038 -1.3931 21 1 13.2395 -10.1332 0.7082 22 1 10.8185 -10.2729 0.7059 23 16 4.5663 -2.5920 0.0021 24 6 3.4858 -1.2017 0.0016 25 7 2.1528 -1.1430 -0.0005 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 1.6430 2.1399 -0.0004 30 1 4.4981 2.8346 1.0205 31 1 5.2672 2.3778 -0.5184 32 1 3.7304 3.2760 -0.5235 33 1 6.3520 0.5323 0.0019 34 1 9.5095 -3.3745 -0.8871 35 1 9.5090 -3.3744 0.8929 36 1 8.6132 -5.6862 0.8934 37 1 8.6135 -5.6870 -0.8865 38 1 11.0675 -5.3284 -0.8854 39 1 11.0664 -5.3276 0.8945 40 1 13.8592 -7.5579 0.0091 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914623069.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:23 Heat of formation + Delta-G solvation = -73.377596 kcal Electronic energy + Delta-G solvation = -22455.907015 eV Core-core repulsion = 18939.580607 eV Total energy + Delta-G solvation = -3516.326408 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.88173 -41.43499 -38.23545 -37.17114 -35.97240 -34.90731 -33.74435 -32.72888 -29.64757 -28.69575 -28.39800 -25.98351 -25.24771 -24.00862 -22.22529 -22.02929 -21.47234 -19.64489 -18.75541 -18.22022 -17.82958 -17.77936 -16.95607 -16.78962 -16.48650 -16.17339 -15.69954 -15.54455 -14.98179 -14.29897 -14.23583 -14.06182 -13.97599 -13.88918 -13.77519 -13.72751 -13.61156 -13.16811 -12.85758 -12.83234 -12.54322 -12.47753 -12.43893 -12.17554 -12.15499 -11.95886 -11.53357 -11.47973 -11.27100 -11.03586 -10.59936 -10.58085 -9.82077 -9.21911 -8.22692 -6.34049 -1.12089 -0.05439 -0.03787 0.55334 0.61538 1.34233 1.41522 1.42269 1.53862 1.55448 2.40512 2.47729 3.11109 3.19351 3.36563 3.44962 3.64725 3.69262 3.95532 3.98329 4.05552 4.31441 4.34792 4.41554 4.49206 4.60645 4.70064 4.76092 4.77067 4.80915 4.81648 4.93285 5.02895 5.05903 5.20469 5.23638 5.24369 5.47087 5.57547 5.61847 5.78793 6.17557 6.39255 6.64837 6.81304 7.35262 8.89410 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.029496 B = 0.002119 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.066610 B =13211.842765 C =14124.556037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.177 3.823 3 C -0.177 4.177 4 C 0.020 3.980 5 C -0.124 4.124 6 C -0.167 4.167 7 C -0.004 4.004 8 C -0.244 4.244 9 C 0.537 3.463 10 O -0.520 6.520 11 O -0.353 6.353 12 C 0.079 3.921 13 C -0.095 4.095 14 C 0.027 3.973 15 C -0.543 4.543 16 H 0.064 0.936 17 C -0.001 4.001 18 N -0.932 5.932 19 Si 0.969 3.031 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.263 1.263 23 S 0.206 5.794 24 C 0.054 3.946 25 N -0.500 5.500 26 H 0.097 0.903 27 H 0.073 0.927 28 H 0.111 0.889 29 H 0.186 0.814 30 H 0.097 0.903 31 H 0.074 0.926 32 H 0.104 0.896 33 H 0.173 0.827 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.067 0.933 38 H -0.001 1.001 39 H -0.001 1.001 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.575 22.596 -0.014 35.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.026 3.974 3 C -0.199 4.199 4 C 0.011 3.989 5 C -0.180 4.180 6 C -0.178 4.178 7 C -0.037 4.037 8 C -0.361 4.361 9 C 0.382 3.618 10 O -0.411 6.411 11 O -0.269 6.269 12 C 0.006 3.994 13 C -0.133 4.133 14 C -0.010 4.010 15 C -0.581 4.581 16 H 0.082 0.918 17 C -0.199 4.199 18 N -0.572 5.572 19 Si 0.793 3.207 20 H -0.197 1.197 21 H -0.207 1.207 22 H -0.187 1.187 23 S 0.472 5.528 24 C -0.190 4.190 25 N -0.213 5.213 26 H 0.116 0.884 27 H 0.092 0.908 28 H 0.130 0.870 29 H 0.203 0.797 30 H 0.115 0.885 31 H 0.093 0.907 32 H 0.122 0.878 33 H 0.190 0.810 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.017 0.983 39 H 0.018 0.982 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -27.617 20.305 -0.011 34.278 hybrid contribution 1.651 0.958 -0.010 1.909 sum -25.966 21.263 -0.021 33.561 Atomic orbital electron populations 1.20957 0.85342 1.05184 1.04757 1.22209 0.98815 0.87308 0.89041 1.21889 0.93544 1.00694 1.03785 1.20467 0.94426 0.93884 0.90161 1.21060 1.00513 0.91812 1.04643 1.18974 0.92792 0.95227 1.10775 1.20243 0.95419 0.95482 0.92563 1.22568 0.94711 0.98652 1.20162 1.19961 0.88187 0.81165 0.72524 1.90859 1.46263 1.56756 1.47200 1.86564 1.32679 1.24166 1.83531 1.23286 0.76739 0.96880 1.02506 1.21486 0.98740 0.90414 1.02633 1.18929 0.90755 0.95699 0.95665 1.21605 0.92845 0.92745 1.50922 0.91786 1.26004 0.95388 1.03926 0.94612 1.70094 0.98167 1.37568 1.51394 0.85388 0.77856 0.78920 0.78529 1.19715 1.20730 1.18678 1.84689 0.90853 1.02716 1.74525 1.24138 0.95159 0.97124 1.02591 1.67145 1.05999 1.31399 1.16805 0.88431 0.90765 0.87020 0.79690 0.88496 0.90690 0.87751 0.81003 0.91188 0.91201 0.91480 0.91456 0.98264 0.98250 0.92659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.70 10.16 71.24 0.72 0.02 16 2 C 0.18 2.57 6.79 42.77 0.29 2.86 16 3 C -0.18 -1.81 9.31 22.00 0.20 -1.60 16 4 C 0.02 0.27 5.94 -19.42 -0.12 0.15 16 5 C -0.12 -0.83 9.88 71.24 0.70 -0.13 16 6 C -0.17 -3.45 5.84 -21.47 -0.13 -3.58 16 7 C 0.00 -0.09 9.27 21.75 0.20 0.11 16 8 C -0.24 -6.73 6.31 23.50 0.15 -6.58 16 9 C 0.54 17.90 7.93 70.07 0.56 18.46 16 10 O -0.52 -19.15 16.51 19.60 0.32 -18.83 16 11 O -0.35 -12.53 10.03 -57.62 -0.58 -13.11 16 12 C 0.08 3.01 5.48 71.98 0.39 3.41 16 13 C -0.10 -4.04 5.53 30.59 0.17 -3.87 16 14 C 0.03 1.42 4.97 29.85 0.15 1.57 16 15 C -0.54 -31.09 9.11 25.60 0.23 -30.85 16 16 H 0.06 3.50 7.74 -2.91 -0.02 3.48 16 17 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 18 N -0.93 -57.00 13.29 21.45 0.28 -56.72 16 19 Si 0.97 44.51 29.54 68.60 2.03 46.54 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 21 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 22 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 23 S 0.21 5.38 23.05 -56.49 -1.30 4.08 16 24 C 0.05 1.30 7.66 84.92 0.65 1.95 16 25 N -0.50 -11.23 10.29 -178.83 -1.84 -13.07 16 26 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.11 0.07 8.08 -2.39 -0.02 0.05 16 29 H 0.19 0.29 8.06 -2.91 -0.02 0.26 16 30 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.07 0.58 7.28 -2.39 -0.02 0.57 16 32 H 0.10 0.20 8.09 -2.39 -0.02 0.18 16 33 H 0.17 3.27 7.38 -2.91 -0.02 3.25 16 34 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 35 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 36 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 37 H 0.07 2.77 8.14 -2.38 -0.02 2.75 16 38 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 39 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 40 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -73.21 361.88 4.61 -68.60 By element: Atomic # 1 Polarization: -0.83 SS G_CDS: 1.05 Total: 0.22 kcal Atomic # 6 Polarization: -22.35 SS G_CDS: 4.65 Total: -17.71 kcal Atomic # 7 Polarization: -68.23 SS G_CDS: -1.56 Total: -69.78 kcal Atomic # 8 Polarization: -31.69 SS G_CDS: -0.25 Total: -31.94 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 16 Polarization: 5.38 SS G_CDS: -1.30 Total: 4.08 kcal Total: -73.21 4.61 -68.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914623069.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.781 kcal (2) G-P(sol) polarization free energy of solvation -73.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds