Wall clock time and date at job start Tue Mar 31 2020 13:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47388 * 333.65441 * 3 2 1 5 5 C 1.36859 * 119.99881 * 263.10848 * 4 3 2 6 6 H 1.08001 * 120.00087 * 214.51307 * 5 4 3 7 7 C 1.39055 * 119.99804 * 34.51198 * 5 4 3 8 8 N 1.31356 * 120.00071 * 5.43224 * 7 5 4 9 9 Si 1.86804 * 119.99676 * 185.42792 * 7 5 4 10 10 H 1.48499 * 109.47157 * 60.00332 * 9 7 5 11 11 H 1.48499 * 109.47208 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47229 * 300.00431 * 9 7 5 13 13 C 1.34769 * 119.99924 * 83.10698 * 4 3 2 14 14 O 1.21612 * 120.00617 * 6.13856 * 13 4 3 15 15 C 1.47596 * 119.99646 * 186.13960 * 13 4 3 16 16 C 1.40000 * 119.86460 * 206.47737 * 15 13 4 17 17 C 1.36521 * 120.11693 * 180.02562 * 16 15 13 18 18 C 1.39319 * 120.05853 * 0.04644 * 17 16 15 19 19 C 1.40358 * 120.49563 * 359.95538 * 18 17 16 20 20 C 1.38651 * 119.23763 * 0.02562 * 19 18 17 21 21 O 1.35153 * 108.51952 * 180.02562 * 19 18 17 22 22 C 1.35093 * 111.52074 * 359.97438 * 21 19 18 23 23 C 1.38999 * 132.30375 * 180.02562 * 22 21 19 24 24 C 1.37887 * 120.09345 * 179.97438 * 23 22 21 25 25 C 1.38628 * 120.62543 * 359.97438 * 24 23 22 26 26 C 1.37865 * 120.13872 * 0.03850 * 25 24 23 27 27 C 1.39167 * 119.72361 * 359.92723 * 26 25 24 28 28 H 4.40637 * 5.51437 * 179.97438 * 4 1 2 29 29 H 1.09005 * 109.47129 * 213.65118 * 3 2 1 30 30 H 1.09004 * 109.47085 * 93.65328 * 3 2 1 31 31 H 0.97002 * 119.99432 * 179.97438 * 8 7 5 32 32 H 1.07992 * 119.94169 * 0.02562 * 16 15 13 33 33 H 1.08003 * 119.96663 * 180.02562 * 17 16 15 34 34 H 1.08002 * 120.08827 * 179.97438 * 20 19 18 35 35 H 1.08004 * 119.95832 * 359.95646 * 23 22 21 36 36 H 1.07995 * 119.68455 * 179.97438 * 24 23 22 37 37 H 1.07995 * 119.92500 * 180.02562 * 25 24 23 38 38 H 1.07997 * 120.13652 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.2369 0.6130 5 6 3.4971 -1.2501 1.9327 6 1 4.3152 -1.8736 2.2619 7 6 2.8117 -0.4608 2.8497 8 7 1.7509 0.2149 2.4711 9 14 3.3997 -0.3617 4.6200 10 1 4.7852 0.1718 4.6523 11 1 2.5040 0.5388 5.3894 12 1 3.3772 -1.7173 5.2258 13 6 3.2280 -2.3622 -0.1228 14 8 3.0136 -2.3260 -1.3193 15 6 3.5901 -3.6386 0.5238 16 6 4.2176 -4.6441 -0.2214 17 6 4.5543 -5.8270 0.3713 18 6 4.2734 -6.0368 1.7196 19 6 3.6447 -5.0384 2.4800 20 6 3.3049 -3.8386 1.8738 21 8 3.4910 -5.4937 3.7432 22 6 3.9799 -6.7454 3.8818 23 6 4.0457 -7.6090 4.9689 24 6 4.6104 -8.8588 4.8258 25 6 5.1169 -9.2691 3.6023 26 6 5.0611 -8.4267 2.5124 27 6 4.4927 -7.1633 2.6452 28 1 -1.0498 -0.0003 0.0003 29 1 3.0089 0.8563 0.5695 30 1 3.0093 0.0663 -1.0256 31 1 1.2726 0.7652 3.1110 32 1 4.4356 -4.4838 -1.2668 33 1 5.0387 -6.6009 -0.2057 34 1 2.8204 -3.0611 2.4457 35 1 3.6543 -7.3007 5.9271 36 1 4.6584 -9.5244 5.6749 37 1 5.5563 -10.2506 3.5029 38 1 5.4561 -8.7461 1.5594 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117129509.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:53 Heat of formation + Delta-G solvation = 85.003273 kcal Electronic energy + Delta-G solvation = -25464.156362 eV Core-core repulsion = 21819.253912 eV Total energy + Delta-G solvation = -3644.902449 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.100 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.19962 -39.24755 -37.87970 -36.88881 -35.22138 -32.47024 -31.93744 -31.41991 -30.72721 -29.72072 -29.06319 -26.47283 -25.21331 -23.80765 -22.88259 -22.19595 -20.90686 -19.80603 -18.50124 -17.64336 -17.02385 -16.50422 -16.37570 -16.14697 -15.89878 -14.98656 -14.61989 -14.58391 -14.17021 -14.09150 -13.77663 -13.45165 -13.24777 -12.93621 -12.54301 -12.32234 -12.26043 -12.02354 -11.81066 -11.71260 -11.57517 -11.21939 -11.03382 -10.91282 -10.59202 -10.51047 -9.63074 -9.38559 -9.32841 -9.00761 -8.76751 -8.64823 -8.00386 -7.88101 -7.84760 -6.47773 -4.22807 0.67622 1.16913 1.78360 1.92470 2.77774 3.06154 3.13111 3.14528 3.50734 3.73937 3.85551 4.03576 4.27481 4.35956 4.46837 4.62156 4.80781 4.82940 4.88212 4.98748 5.14796 5.26409 5.40495 5.59238 5.66266 5.68755 5.77094 5.86844 6.02975 6.16611 6.29736 6.33712 6.39128 6.52558 6.59285 6.69649 6.71613 6.75443 6.96215 7.03228 7.14745 7.23364 7.47799 7.60014 8.15976 8.84819 8.99589 9.22712 9.65204 10.46916 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.015334 B = 0.004401 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.581815 B = 6360.829717 C = 7686.281397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.099 4.099 3 C 0.241 3.759 4 N -0.425 5.425 5 C -0.351 4.351 6 H 0.101 0.899 7 C 0.045 3.955 8 N -0.842 5.842 9 Si 0.913 3.087 10 H -0.270 1.270 11 H -0.280 1.280 12 H -0.266 1.266 13 C 0.505 3.495 14 O -0.593 6.593 15 C -0.059 4.059 16 C -0.093 4.093 17 C -0.083 4.083 18 C -0.123 4.123 19 C 0.066 3.934 20 C -0.068 4.068 21 O -0.198 6.198 22 C 0.084 3.916 23 C -0.118 4.118 24 C -0.091 4.091 25 C -0.146 4.146 26 C -0.065 4.065 27 C -0.117 4.117 28 H 0.196 0.804 29 H 0.099 0.901 30 H 0.070 0.930 31 H 0.275 0.725 32 H 0.136 0.864 33 H 0.125 0.875 34 H 0.179 0.821 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.128 0.872 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.176 -12.323 3.764 13.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 C -0.100 4.100 3 C 0.119 3.881 4 N -0.142 5.142 5 C -0.478 4.478 6 H 0.119 0.881 7 C -0.164 4.164 8 N -0.476 5.476 9 Si 0.739 3.261 10 H -0.195 1.195 11 H -0.206 1.206 12 H -0.191 1.191 13 C 0.295 3.705 14 O -0.480 6.480 15 C -0.062 4.062 16 C -0.113 4.113 17 C -0.102 4.102 18 C -0.125 4.125 19 C 0.021 3.979 20 C -0.087 4.087 21 O -0.102 6.102 22 C 0.038 3.962 23 C -0.137 4.137 24 C -0.109 4.109 25 C -0.164 4.164 26 C -0.083 4.083 27 C -0.118 4.118 28 H 0.213 0.787 29 H 0.117 0.883 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.154 0.846 33 H 0.143 0.857 34 H 0.195 0.805 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.146 0.854 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.817 -11.929 3.473 13.325 hybrid contribution -0.044 0.088 1.171 1.175 sum 4.774 -11.841 4.645 13.585 Atomic orbital electron populations 1.24124 0.95261 1.02242 1.07095 1.22916 0.94160 0.98304 0.94636 1.18036 0.84459 0.88759 0.96813 1.43402 1.54726 1.06075 1.09963 1.19614 1.16059 1.29855 0.82285 0.88128 1.25512 0.94470 0.96285 1.00098 1.69920 1.15439 1.26590 1.35653 0.86183 0.78938 0.79125 0.81898 1.19455 1.20551 1.19106 1.17987 0.82692 0.83334 0.86531 1.90654 1.56756 1.85797 1.14778 1.19809 0.98671 0.95501 0.92199 1.20859 0.97809 0.92171 1.00425 1.19988 1.00723 0.97551 0.91890 1.19420 1.04764 0.93342 0.94935 1.19623 1.01139 0.95626 0.81555 1.21423 0.99085 0.93772 0.94394 1.84075 1.69846 1.27173 1.29140 1.19676 0.96861 0.84166 0.95539 1.19990 1.04214 0.92839 0.96648 1.20879 0.97433 0.94685 0.97915 1.20973 1.02616 1.00065 0.92738 1.20508 0.97317 0.91315 0.99191 1.19434 1.03867 0.95324 0.93132 0.78663 0.88339 0.91204 0.91398 0.84601 0.85671 0.80451 0.84997 0.84899 0.85374 0.85505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -6.01 19.17 29.55 0.57 -5.44 16 2 C -0.10 -2.37 11.06 -37.12 -0.41 -2.78 16 3 C 0.24 5.65 5.11 -6.83 -0.03 5.62 16 4 N -0.43 -10.35 2.56 -119.10 -0.31 -10.65 16 5 C -0.35 -8.35 6.10 -15.01 -0.09 -8.45 16 6 H 0.10 2.34 6.24 -52.49 -0.33 2.01 16 7 C 0.05 1.07 5.11 -17.45 -0.09 0.98 16 8 N -0.84 -20.79 9.33 55.50 0.52 -20.27 16 9 Si 0.91 18.72 29.56 -169.99 -5.02 13.70 16 10 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 11 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 12 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 13 C 0.50 12.23 7.34 -12.45 -0.09 12.14 16 14 O -0.59 -15.45 16.28 5.27 0.09 -15.37 16 15 C -0.06 -1.25 5.53 -104.98 -0.58 -1.83 16 16 C -0.09 -1.71 9.52 -39.54 -0.38 -2.09 16 17 C -0.08 -1.35 10.02 -39.80 -0.40 -1.75 16 18 C -0.12 -2.17 6.38 -104.95 -0.67 -2.84 16 19 C 0.07 1.29 7.33 -38.63 -0.28 1.01 16 20 C -0.07 -1.44 7.80 -38.99 -0.30 -1.74 16 21 O -0.20 -3.76 10.58 1.09 0.01 -3.75 16 22 C 0.08 1.37 7.34 -38.55 -0.28 1.08 16 23 C -0.12 -1.49 10.06 -39.43 -0.40 -1.88 16 24 C -0.09 -0.92 10.01 -39.57 -0.40 -1.31 16 25 C -0.15 -1.47 10.04 -39.57 -0.40 -1.86 16 26 C -0.07 -0.79 10.09 -39.37 -0.40 -1.19 16 27 C -0.12 -1.83 6.38 -105.05 -0.67 -2.50 16 28 H 0.20 3.61 7.80 -54.10 -0.42 3.19 16 29 H 0.10 2.28 7.15 -51.93 -0.37 1.91 16 30 H 0.07 1.56 7.56 -51.93 -0.39 1.17 16 31 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 32 H 0.14 2.34 7.85 -52.49 -0.41 1.93 16 33 H 0.13 1.59 8.06 -52.48 -0.42 1.16 16 34 H 0.18 4.05 5.30 -52.49 -0.28 3.77 16 35 H 0.13 1.40 8.06 -52.48 -0.42 0.97 16 36 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 334.52 15.07 5.04 5.04 Total: -1.00 -29.13 334.52 -8.43 -37.56 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -3.45 Total: 8.58 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: -5.30 Total: -14.83 kcal Atomic # 7 Polarization: -31.14 SS G_CDS: 0.21 Total: -30.93 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: 0.10 Total: -19.12 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.02 Total: 13.70 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.13 -8.43 -37.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117129509.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.560 kcal (2) G-P(sol) polarization free energy of solvation -29.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds