Wall clock time and date at job start Tue Mar 31 2020 12:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99959 * 2 1 4 4 H 1.48495 * 109.47294 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46951 * 299.99849 * 3 2 1 6 6 H 1.48500 * 109.47257 * 59.99852 * 3 2 1 7 7 C 1.37877 * 120.00219 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00184 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99892 * 0.02562 * 7 2 1 10 10 C 1.53511 * 114.16748 * 179.97438 * 9 7 2 11 11 N 1.47483 * 87.92995 * 220.13780 * 10 9 7 12 12 C 1.46896 * 111.00032 * 138.70854 * 11 10 9 13 13 C 1.50700 * 109.47265 * 170.00048 * 12 11 10 14 14 C 1.38172 * 119.98614 * 104.72092 * 13 12 11 15 15 C 1.38686 * 119.97018 * 180.27251 * 14 13 12 16 16 O 1.35946 * 120.02892 * 180.02562 * 15 14 13 17 17 C 1.42908 * 116.99707 * 179.97438 * 16 15 14 18 18 F 1.39902 * 109.46571 * 60.00538 * 17 16 15 19 19 F 1.39901 * 109.46751 * 180.02562 * 17 16 15 20 20 F 1.39891 * 109.47171 * 300.00620 * 17 16 15 21 21 C 1.38733 * 119.93718 * 0.02562 * 15 14 13 22 22 C 1.38123 * 119.96948 * 359.97438 * 21 15 14 23 23 C 1.38435 * 119.98424 * 284.99562 * 13 12 11 24 24 F 1.35102 * 119.96610 * 359.74709 * 23 13 12 25 25 C 1.47474 * 87.83621 * 27.01317 * 11 10 9 26 26 H 0.96998 * 120.00361 * 0.02562 * 1 2 3 27 27 H 1.08995 * 113.25738 * 312.94311 * 9 7 2 28 28 H 1.08999 * 113.47910 * 105.37023 * 10 9 7 29 29 H 1.08998 * 113.53447 * 334.90837 * 10 9 7 30 30 H 1.09003 * 109.47637 * 49.99447 * 12 11 10 31 31 H 1.09003 * 109.46970 * 289.99873 * 12 11 10 32 32 H 1.08002 * 120.01686 * 0.25452 * 14 13 12 33 33 H 1.07997 * 120.01078 * 179.97438 * 21 15 14 34 34 H 1.08000 * 119.98352 * 179.97438 * 22 21 15 35 35 H 1.08995 * 113.47636 * 87.75778 * 25 11 10 36 36 H 1.09000 * 113.47565 * 218.22623 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.1498 -3.7437 0.0005 11 7 1.2051 -4.3601 -0.9496 12 6 1.9206 -5.0902 -2.0045 13 6 0.9384 -5.9038 -2.8072 14 6 0.5644 -5.4858 -4.0699 15 6 -0.3438 -6.2318 -4.8060 16 8 -0.7123 -5.8219 -6.0487 17 6 -1.6514 -6.6397 -6.7498 18 9 -2.8383 -6.7222 -6.0139 19 9 -1.9169 -6.0759 -8.0023 20 9 -1.1178 -7.9217 -6.9195 21 6 -0.8760 -7.3969 -4.2729 22 6 -0.5004 -7.8124 -3.0104 23 6 0.4069 -7.0668 -2.2767 24 9 0.7731 -7.4742 -1.0418 25 6 0.8518 -2.9993 -1.3948 26 1 -0.4850 0.8400 -0.0004 27 1 0.4448 -2.5306 0.7333 28 1 2.1892 -4.2509 0.9645 29 1 3.1383 -3.5667 -0.4232 30 1 2.6576 -5.7535 -1.5517 31 1 2.4251 -4.3799 -2.6597 32 1 0.9789 -4.5782 -4.4834 33 1 -1.5837 -7.9786 -4.8450 34 1 -0.9149 -8.7191 -2.5951 35 1 1.4937 -2.6228 -2.1912 36 1 -0.2088 -2.8756 -1.6133 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143538453.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:33 Heat of formation + Delta-G solvation = -176.283577 kcal Electronic energy + Delta-G solvation = -26517.082694 eV Core-core repulsion = 21888.224031 eV Total energy + Delta-G solvation = -4628.858663 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.094 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.71147 -48.74315 -48.42944 -48.30369 -40.44438 -39.07436 -37.58856 -33.18700 -32.15451 -30.35141 -28.59537 -26.27686 -25.67120 -24.81198 -23.30240 -22.95040 -21.59984 -19.49298 -19.42184 -19.35518 -18.65621 -17.58636 -16.88962 -16.60175 -16.23135 -15.72676 -15.31131 -15.17347 -14.87792 -14.82457 -14.74059 -14.65133 -14.55968 -14.38114 -14.27445 -14.06859 -13.99360 -13.72765 -13.10836 -12.94932 -12.69267 -12.05763 -11.77815 -11.70437 -11.34443 -11.10828 -10.95865 -10.62496 -10.36449 -9.85368 -9.48122 -9.06870 -8.96684 -8.50474 -8.42608 -8.08994 -6.08372 -4.13360 0.88887 0.96291 1.23062 2.55602 3.24643 3.25982 3.34670 3.37754 3.50503 3.73101 4.19523 4.35809 4.37222 4.44292 4.75444 4.80612 5.00364 5.20901 5.23744 5.43387 5.62272 5.77109 5.80225 5.85307 5.99683 6.15654 6.18584 6.30127 6.41160 6.63832 6.65110 6.72040 7.09426 7.10108 7.69422 7.85805 7.99237 8.33318 8.90419 9.52166 11.01170 Molecular weight = 319.09amu Principal moments of inertia in cm(-1) A = 0.015890 B = 0.003219 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.648805 B = 8695.110027 C = 9939.475221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.067 3.933 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.517 4.517 8 H 0.059 0.941 9 C 0.042 3.958 10 C -0.003 4.003 11 N -0.478 5.478 12 C 0.055 3.945 13 C -0.059 4.059 14 C -0.088 4.088 15 C 0.090 3.910 16 O -0.307 6.307 17 C 0.603 3.397 18 F -0.164 7.164 19 F -0.132 7.132 20 F -0.167 7.167 21 C -0.168 4.168 22 C -0.118 4.118 23 C 0.107 3.893 24 F -0.126 7.126 25 C 0.004 3.996 26 H 0.262 0.738 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.081 0.919 31 H 0.059 0.941 32 H 0.147 0.853 33 H 0.139 0.861 34 H 0.144 0.856 35 H 0.055 0.945 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.956 -16.274 -12.683 20.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.136 4.136 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.555 4.555 8 H 0.077 0.923 9 C 0.023 3.977 10 C -0.132 4.132 11 N -0.200 5.200 12 C -0.073 4.073 13 C -0.061 4.061 14 C -0.107 4.107 15 C 0.048 3.952 16 O -0.227 6.227 17 C 0.513 3.487 18 F -0.146 7.146 19 F -0.114 7.114 20 F -0.149 7.149 21 C -0.187 4.187 22 C -0.137 4.137 23 C 0.087 3.913 24 F -0.104 7.104 25 C -0.125 4.125 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.077 0.923 32 H 0.165 0.835 33 H 0.156 0.844 34 H 0.162 0.838 35 H 0.073 0.927 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.565 -16.521 -12.535 20.897 hybrid contribution 0.768 1.082 -0.519 1.424 sum -1.797 -15.439 -13.054 20.298 Atomic orbital electron populations 1.69974 1.06008 1.26702 1.49537 1.25019 0.94807 0.99190 0.94552 0.86564 0.80169 0.83761 0.77677 1.19705 1.20984 1.20891 1.21061 0.92785 0.90186 1.51504 0.92319 1.20089 0.94290 0.90804 0.92503 1.24026 0.95707 0.97575 0.95873 1.68945 1.27147 1.14351 1.09553 1.21602 0.93663 0.97409 0.94660 1.19780 0.98726 0.94022 0.93548 1.20202 0.97251 1.00282 0.92943 1.18568 0.98551 0.95636 0.82495 1.86441 1.57989 1.48795 1.29444 1.19357 0.76966 0.75312 0.77098 1.93312 1.48430 1.95703 1.77195 1.93309 1.93210 1.85551 1.39297 1.93292 1.86114 1.40120 1.95358 1.21245 1.03178 0.96668 0.97636 1.20865 0.97842 1.00934 0.94048 1.17438 0.97820 0.94644 0.81372 1.91527 1.90040 1.89802 1.39070 1.24169 1.00393 0.86431 1.01514 0.92872 0.91736 0.91752 0.92597 0.90095 0.92266 0.83542 0.84370 0.83846 0.92663 0.91735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.22 13.26 55.43 0.74 -24.49 16 2 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 3 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -13.76 8.83 -34.44 -0.30 -14.07 16 8 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 9 C 0.04 1.04 3.76 -91.24 -0.34 0.69 16 10 C 0.00 -0.07 7.25 -7.55 -0.05 -0.12 16 11 N -0.48 -9.36 6.32 -246.11 -1.55 -10.92 16 12 C 0.05 0.88 4.62 -4.98 -0.02 0.86 16 13 C -0.06 -0.87 5.47 -104.57 -0.57 -1.44 16 14 C -0.09 -1.18 9.61 -39.44 -0.38 -1.56 16 15 C 0.09 1.13 6.48 -39.23 -0.25 0.88 16 16 O -0.31 -3.67 10.38 -19.57 -0.20 -3.87 16 17 C 0.60 6.10 3.42 101.05 0.35 6.44 16 18 F -0.16 -1.68 15.56 2.25 0.04 -1.65 16 19 F -0.13 -1.29 17.53 2.25 0.04 -1.25 16 20 F -0.17 -1.57 15.56 2.25 0.04 -1.54 16 21 C -0.17 -1.92 8.26 -39.44 -0.33 -2.24 16 22 C -0.12 -1.38 10.02 -39.54 -0.40 -1.77 16 23 C 0.11 1.52 7.24 -39.42 -0.29 1.23 16 24 F -0.13 -1.94 16.75 2.25 0.04 -1.90 16 25 C 0.00 0.08 7.28 -7.55 -0.06 0.03 16 26 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 27 H 0.06 1.75 8.11 -51.93 -0.42 1.33 16 28 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.06 1.09 7.87 -51.93 -0.41 0.69 16 30 H 0.08 1.21 8.01 -51.93 -0.42 0.79 16 31 H 0.06 0.91 7.11 -51.93 -0.37 0.54 16 32 H 0.15 1.84 8.00 -52.49 -0.42 1.42 16 33 H 0.14 1.32 5.10 -52.49 -0.27 1.06 16 34 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.06 1.20 7.38 -51.93 -0.38 0.82 16 36 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 LS Contribution 325.96 15.07 4.91 4.91 Total: -1.00 -27.98 325.96 -7.23 -35.20 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -3.50 Total: -0.85 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -2.74 Total: -9.36 kcal Atomic # 7 Polarization: -34.58 SS G_CDS: -0.82 Total: -35.40 kcal Atomic # 8 Polarization: -3.67 SS G_CDS: -0.20 Total: -3.87 kcal Atomic # 9 Polarization: -6.48 SS G_CDS: 0.15 Total: -6.33 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.98 -7.23 -35.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143538453.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.080 kcal (2) G-P(sol) polarization free energy of solvation -27.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds