Wall clock time and date at job start Tue Mar 31 2020 12:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99959 * 2 1 4 4 H 1.48495 * 109.47294 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46951 * 299.99849 * 3 2 1 6 6 H 1.48500 * 109.47257 * 59.99852 * 3 2 1 7 7 C 1.37877 * 120.00219 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00184 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99892 * 0.02562 * 7 2 1 10 10 C 1.53511 * 114.16748 * 179.97438 * 9 7 2 11 11 N 1.47483 * 87.92995 * 220.13780 * 10 9 7 12 12 C 1.46896 * 111.00032 * 138.70854 * 11 10 9 13 13 C 1.50700 * 109.47265 * 170.00048 * 12 11 10 14 14 C 1.38172 * 119.98614 * 104.72092 * 13 12 11 15 15 C 1.38686 * 119.97018 * 180.27251 * 14 13 12 16 16 O 1.35946 * 120.02892 * 180.02562 * 15 14 13 17 17 C 1.42908 * 116.99707 * 179.97438 * 16 15 14 18 18 F 1.39902 * 109.46571 * 60.00538 * 17 16 15 19 19 F 1.39901 * 109.46751 * 180.02562 * 17 16 15 20 20 F 1.39891 * 109.47171 * 300.00620 * 17 16 15 21 21 C 1.38733 * 119.93718 * 0.02562 * 15 14 13 22 22 C 1.38123 * 119.96948 * 359.97438 * 21 15 14 23 23 C 1.38435 * 119.98424 * 284.99562 * 13 12 11 24 24 F 1.35102 * 119.96610 * 359.74709 * 23 13 12 25 25 C 1.47474 * 87.83621 * 27.01317 * 11 10 9 26 26 H 0.96998 * 120.00361 * 0.02562 * 1 2 3 27 27 H 1.08995 * 113.25738 * 312.94311 * 9 7 2 28 28 H 1.08999 * 113.47910 * 105.37023 * 10 9 7 29 29 H 1.08998 * 113.53447 * 334.90837 * 10 9 7 30 30 H 1.09003 * 109.47637 * 49.99447 * 12 11 10 31 31 H 1.09003 * 109.46970 * 289.99873 * 12 11 10 32 32 H 1.08002 * 120.01686 * 0.25452 * 14 13 12 33 33 H 1.07997 * 120.01078 * 179.97438 * 21 15 14 34 34 H 1.08000 * 119.98352 * 179.97438 * 22 21 15 35 35 H 1.08995 * 113.47636 * 87.75778 * 25 11 10 36 36 H 1.09000 * 113.47565 * 218.22623 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.1498 -3.7437 0.0005 11 7 1.2051 -4.3601 -0.9496 12 6 1.9206 -5.0902 -2.0045 13 6 0.9384 -5.9038 -2.8072 14 6 0.5644 -5.4858 -4.0699 15 6 -0.3438 -6.2318 -4.8060 16 8 -0.7123 -5.8219 -6.0487 17 6 -1.6514 -6.6397 -6.7498 18 9 -2.8383 -6.7222 -6.0139 19 9 -1.9169 -6.0759 -8.0023 20 9 -1.1178 -7.9217 -6.9195 21 6 -0.8760 -7.3969 -4.2729 22 6 -0.5004 -7.8124 -3.0104 23 6 0.4069 -7.0668 -2.2767 24 9 0.7731 -7.4742 -1.0418 25 6 0.8518 -2.9993 -1.3948 26 1 -0.4850 0.8400 -0.0004 27 1 0.4448 -2.5306 0.7333 28 1 2.1892 -4.2509 0.9645 29 1 3.1383 -3.5667 -0.4232 30 1 2.6576 -5.7535 -1.5517 31 1 2.4251 -4.3799 -2.6597 32 1 0.9789 -4.5782 -4.4834 33 1 -1.5837 -7.9786 -4.8450 34 1 -0.9149 -8.7191 -2.5951 35 1 1.4937 -2.6228 -2.1912 36 1 -0.2088 -2.8756 -1.6133 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143538453.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:32 Heat of formation + Delta-G solvation = -193.109139 kcal Electronic energy + Delta-G solvation = -26517.812305 eV Core-core repulsion = 21888.224031 eV Total energy + Delta-G solvation = -4629.588274 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.094 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.51059 -49.85563 -49.22144 -49.09896 -41.45354 -40.63467 -38.64381 -34.91070 -33.62379 -31.40727 -30.08133 -27.53887 -26.97046 -26.52669 -24.70061 -24.03529 -22.77319 -20.52115 -20.42231 -20.22837 -20.20015 -18.71840 -18.53616 -17.80005 -17.22282 -16.90986 -16.57864 -16.28845 -16.19008 -15.98788 -15.75409 -15.67399 -15.54451 -15.49279 -15.27278 -15.19103 -15.13525 -14.87945 -14.37216 -14.08143 -13.87906 -13.71274 -13.33989 -13.09393 -12.90154 -12.80158 -12.36630 -12.22523 -12.06737 -11.60184 -11.20726 -10.89585 -10.51319 -10.19548 -9.72303 -9.49180 -8.14465 -6.25954 -0.13459 -0.02166 0.37143 1.42648 1.44990 1.56176 1.71217 2.23936 2.43522 2.68428 2.91558 3.15046 3.19092 3.28816 3.44271 3.52138 3.73196 3.92412 4.06912 4.22905 4.31062 4.46901 4.56383 4.66539 4.73255 4.83536 4.84981 4.87836 4.96380 5.07308 5.18059 5.24412 5.48137 5.63794 5.72748 5.85384 6.28530 6.34751 6.84263 7.43075 8.95508 Molecular weight = 319.09amu Principal moments of inertia in cm(-1) A = 0.015890 B = 0.003219 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.648805 B = 8695.110027 C = 9939.475221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.015 3.985 3 Si 0.957 3.043 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.528 4.528 8 H 0.062 0.938 9 C 0.021 3.979 10 C 0.012 3.988 11 N -0.479 5.479 12 C 0.056 3.944 13 C -0.075 4.075 14 C -0.096 4.096 15 C 0.087 3.913 16 O -0.316 6.316 17 C 0.608 3.392 18 F -0.164 7.164 19 F -0.129 7.129 20 F -0.160 7.160 21 C -0.162 4.162 22 C -0.108 4.108 23 C 0.089 3.911 24 F -0.137 7.137 25 C 0.019 3.981 26 H 0.262 0.738 27 H 0.027 0.973 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.150 0.850 33 H 0.160 0.840 34 H 0.173 0.827 35 H 0.058 0.942 36 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.391 -17.281 -13.765 22.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.184 4.184 3 Si 0.783 3.217 4 H -0.186 1.186 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.567 4.567 8 H 0.080 0.920 9 C 0.002 3.998 10 C -0.117 4.117 11 N -0.201 5.201 12 C -0.072 4.072 13 C -0.077 4.077 14 C -0.115 4.115 15 C 0.045 3.955 16 O -0.236 6.236 17 C 0.518 3.482 18 F -0.146 7.146 19 F -0.111 7.111 20 F -0.142 7.142 21 C -0.180 4.180 22 C -0.126 4.126 23 C 0.069 3.931 24 F -0.115 7.115 25 C -0.110 4.110 26 H 0.071 0.929 27 H 0.046 0.954 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.111 0.889 31 H 0.085 0.915 32 H 0.168 0.832 33 H 0.177 0.823 34 H 0.190 0.810 35 H 0.076 0.924 36 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.987 -17.547 -13.623 22.303 hybrid contribution 0.545 1.306 -0.235 1.435 sum -1.441 -16.240 -13.858 21.398 Atomic orbital electron populations 1.70103 1.07594 1.27504 1.50935 1.25824 0.95548 1.02706 0.94333 0.85518 0.79251 0.79422 0.77539 1.18638 1.20689 1.20768 1.21405 0.93098 0.91277 1.50880 0.91980 1.20031 0.94508 0.92161 0.93146 1.23849 0.95591 0.95430 0.96799 1.68849 1.27776 1.12949 1.10522 1.21601 0.94107 0.97507 0.93964 1.19673 0.99414 0.94529 0.94053 1.20243 0.97724 1.00667 0.92854 1.18640 0.98304 0.95862 0.82715 1.86420 1.58443 1.49475 1.29257 1.19243 0.76645 0.75329 0.76985 1.93316 1.48329 1.95690 1.77225 1.93320 1.93138 1.85568 1.39036 1.93308 1.86020 1.39552 1.95302 1.21511 1.02802 0.96143 0.97565 1.21157 0.96481 1.01315 0.93654 1.17682 0.98886 0.95158 0.81365 1.91497 1.90306 1.89925 1.39808 1.23867 0.99051 0.88056 1.00046 0.92896 0.95436 0.90898 0.91293 0.88864 0.91509 0.83212 0.82313 0.80978 0.92351 0.93898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.78 13.26 21.45 0.28 -53.50 16 2 C 0.02 0.83 5.46 84.66 0.46 1.29 16 3 Si 0.96 42.60 29.54 68.60 2.03 44.63 16 4 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.53 -28.34 8.83 25.60 0.23 -28.11 16 8 H 0.06 3.21 7.81 -2.91 -0.02 3.19 16 9 C 0.02 1.04 3.76 -11.20 -0.04 0.99 16 10 C 0.01 0.48 7.25 83.57 0.61 1.08 16 11 N -0.48 -18.64 6.32 -932.55 -5.89 -24.53 16 12 C 0.06 1.74 4.62 85.56 0.40 2.13 16 13 C -0.08 -2.13 5.47 -19.83 -0.11 -2.24 16 14 C -0.10 -2.49 9.61 22.36 0.21 -2.27 16 15 C 0.09 2.05 6.48 22.50 0.15 2.20 16 16 O -0.32 -7.05 10.38 -92.94 -0.96 -8.01 16 17 C 0.61 11.08 3.42 113.37 0.39 11.47 16 18 F -0.16 -3.00 15.56 44.97 0.70 -2.30 16 19 F -0.13 -2.30 17.53 44.97 0.79 -1.51 16 20 F -0.16 -2.62 15.56 44.97 0.70 -1.92 16 21 C -0.16 -3.28 8.26 22.36 0.18 -3.09 16 22 C -0.11 -2.25 10.02 22.30 0.22 -2.02 16 23 C 0.09 2.39 7.24 22.37 0.16 2.55 16 24 F -0.14 -4.05 16.75 44.97 0.75 -3.30 16 25 C 0.02 0.86 7.28 83.57 0.61 1.46 16 26 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 27 H 0.03 1.56 8.11 -2.39 -0.02 1.54 16 28 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 29 H 0.07 2.60 7.87 -2.39 -0.02 2.58 16 30 H 0.09 2.65 8.01 -2.39 -0.02 2.63 16 31 H 0.07 1.97 7.11 -2.39 -0.02 1.95 16 32 H 0.15 3.67 8.00 -2.91 -0.02 3.65 16 33 H 0.16 2.54 5.10 -2.91 -0.01 2.52 16 34 H 0.17 2.54 8.06 -2.91 -0.02 2.52 16 35 H 0.06 2.55 7.38 -2.39 -0.02 2.54 16 36 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -60.06 325.96 3.00 -57.06 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: 1.14 Total: 7.94 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: 3.47 Total: -14.56 kcal Atomic # 7 Polarization: -72.42 SS G_CDS: -5.60 Total: -78.03 kcal Atomic # 8 Polarization: -7.05 SS G_CDS: -0.96 Total: -8.01 kcal Atomic # 9 Polarization: -11.98 SS G_CDS: 2.94 Total: -9.03 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -60.06 3.00 -57.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143538453.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.046 kcal (2) G-P(sol) polarization free energy of solvation -60.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds