Wall clock time and date at job start Tue Mar 31 2020 12:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38599 * 120.80087 * 2 1 4 4 N 1.32333 * 119.10405 * 179.97438 * 3 2 1 5 5 C 1.31796 * 120.81551 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.11869 * 180.02562 * 5 4 3 7 7 C 1.52997 * 109.47303 * 89.99764 * 6 5 4 8 8 N 1.46494 * 109.47478 * 179.97438 * 7 6 5 9 9 C 1.38540 * 120.00248 * 180.02562 * 8 7 6 10 10 C 1.40040 * 120.44821 * 359.97438 * 9 8 7 11 11 C 1.38803 * 118.59497 * 180.02562 * 10 9 8 12 12 Cl 1.73596 * 120.34007 * 179.97438 * 11 10 9 13 13 N 1.32215 * 119.32192 * 0.02562 * 11 10 9 14 14 C 1.33413 * 120.86102 * 0.02562 * 13 11 10 15 15 C 1.41579 * 119.23859 * 180.27501 * 14 13 11 16 16 H 1.07993 * 120.00328 * 179.72220 * 15 14 13 17 17 C 1.40053 * 119.99634 * 359.72889 * 15 14 13 18 18 N 1.30699 * 120.00179 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99807 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47413 * 89.99640 * 19 17 15 21 21 H 1.48504 * 109.47219 * 209.99450 * 19 17 15 22 22 H 1.48499 * 109.47382 * 329.99231 * 19 17 15 23 23 N 1.32565 * 120.45023 * 180.02562 * 9 8 7 24 24 N 1.31787 * 121.75781 * 0.27668 * 5 4 3 25 25 C 1.32335 * 120.81975 * 359.44152 * 24 5 4 26 26 H 1.08997 * 109.47157 * 89.99845 * 1 2 3 27 27 H 1.09003 * 109.47000 * 210.00092 * 1 2 3 28 28 H 1.08993 * 109.46868 * 329.99683 * 1 2 3 29 29 H 1.07999 * 120.44759 * 359.95381 * 3 2 1 30 30 H 1.09002 * 109.47398 * 329.99977 * 6 5 4 31 31 H 1.08996 * 109.47524 * 210.00030 * 6 5 4 32 32 H 1.09005 * 109.47222 * 59.99882 * 7 6 5 33 33 H 1.08999 * 109.47552 * 300.00476 * 7 6 5 34 34 H 0.96996 * 120.00177 * 0.02562 * 8 7 6 35 35 H 1.07995 * 120.70564 * 0.02562 * 10 9 8 36 36 H 0.96997 * 119.99827 * 180.02562 * 18 17 15 37 37 H 1.07999 * 120.44695 * 180.29182 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1905 0.0000 4 7 3.5395 1.1513 0.0005 5 6 4.1808 -0.0001 0.0015 6 6 5.6878 -0.0001 0.0027 7 6 6.1968 0.0006 1.4455 8 7 7.6617 0.0000 1.4467 9 6 8.3535 0.0000 2.6470 10 6 7.6619 0.0011 3.8647 11 6 8.3936 0.0015 5.0442 12 17 7.5826 0.0035 6.5791 13 7 9.7145 0.0014 4.9868 14 6 10.3485 0.0014 3.8130 15 6 11.7641 -0.0046 3.7916 16 1 12.2899 -0.0092 2.8483 17 6 12.4825 -0.0047 4.9938 18 7 11.8462 0.0012 6.1354 19 14 14.3502 -0.0119 4.9656 20 1 14.8506 1.3862 4.9550 21 1 14.8608 -0.7112 6.1721 22 1 14.8243 -0.7166 3.7474 23 7 9.6791 -0.0001 2.6584 24 7 3.5394 -1.1513 -0.0033 25 6 2.2167 -1.1905 0.0016 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8899 0.5139 29 1 1.6972 2.1373 -0.0008 30 1 6.0516 0.8897 -0.5113 31 1 6.0516 -0.8902 -0.5104 32 1 5.8330 -0.8891 1.9596 33 1 5.8330 0.8908 1.9587 34 1 8.1474 -0.0003 0.6071 35 1 6.5822 0.0015 3.8856 36 1 12.3438 0.0015 6.9680 37 1 1.6972 -2.1374 0.0023 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162239742.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:34 Heat of formation + Delta-G solvation = 63.302571 kcal Electronic energy + Delta-G solvation = -22504.678885 eV Core-core repulsion = 18920.988075 eV Total energy + Delta-G solvation = -3583.690810 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.089 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.10753 -40.92338 -37.86648 -37.36621 -35.71139 -35.03269 -34.72297 -33.38457 -32.31296 -30.54567 -28.35119 -27.63481 -25.64238 -24.88647 -24.00968 -23.14511 -22.47655 -19.86608 -18.79723 -18.34954 -18.09663 -17.43827 -16.57902 -16.26527 -16.10569 -15.83681 -15.49711 -15.31808 -15.14024 -15.13793 -14.57994 -14.46679 -14.00516 -13.88711 -13.23950 -13.17127 -13.14645 -13.01770 -12.89117 -12.75846 -12.50873 -12.04388 -11.94286 -11.88964 -11.83347 -11.59342 -10.94322 -10.93395 -10.20523 -10.14373 -10.11994 -9.44365 -8.87061 -8.43835 -6.79953 -0.16088 0.12961 0.61951 1.10748 1.11401 1.43366 1.54634 1.60094 2.16183 2.25838 2.72332 2.74705 3.03750 3.21740 3.69112 3.84744 3.88276 3.94565 3.94642 4.10395 4.18305 4.27320 4.43433 4.56562 4.61154 4.67899 4.84661 4.88536 4.90175 4.94918 5.09599 5.11528 5.17865 5.30109 5.49451 5.97461 6.00960 6.15834 6.48473 6.64893 6.74121 7.08930 7.20308 8.18079 8.36625 Molecular weight = 319.09amu Principal moments of inertia in cm(-1) A = 0.022507 B = 0.002554 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.764847 B =10958.649281 C =11909.820994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.185 4.185 3 C 0.133 3.867 4 N -0.532 5.532 5 C 0.299 3.701 6 C -0.051 4.051 7 C 0.156 3.844 8 N -0.712 5.712 9 C 0.451 3.549 10 C -0.403 4.403 11 C 0.248 3.752 12 Cl -0.058 7.058 13 N -0.561 5.561 14 C 0.406 3.594 15 C -0.424 4.424 16 H 0.097 0.903 17 C 0.023 3.977 18 N -0.739 5.739 19 Si 1.002 2.998 20 H -0.260 1.260 21 H -0.264 1.264 22 H -0.254 1.254 23 N -0.662 5.662 24 N -0.532 5.532 25 C 0.133 3.867 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.195 0.805 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.407 0.593 35 H 0.131 0.869 36 H 0.285 0.715 37 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.564 -0.012 -10.620 22.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.189 4.189 3 C -0.032 4.032 4 N -0.246 5.246 5 C 0.031 3.969 6 C -0.090 4.090 7 C 0.030 3.970 8 N -0.349 5.349 9 C 0.203 3.797 10 C -0.435 4.435 11 C 0.069 3.931 12 Cl -0.030 7.030 13 N -0.284 5.284 14 C 0.169 3.831 15 C -0.459 4.459 16 H 0.115 0.885 17 C -0.202 4.202 18 N -0.360 5.360 19 Si 0.821 3.179 20 H -0.184 1.184 21 H -0.189 1.189 22 H -0.177 1.177 23 N -0.393 5.393 24 N -0.246 5.246 25 C -0.032 4.032 26 H 0.108 0.892 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.212 0.788 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.244 0.756 35 H 0.148 0.852 36 H 0.096 0.904 37 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -17.780 -0.016 -10.202 20.499 hybrid contribution -1.111 0.010 0.205 1.130 sum -18.891 -0.006 -9.997 21.373 Atomic orbital electron populations 1.20747 0.86277 1.04833 1.04036 1.22110 1.01018 0.94669 1.01062 1.23771 0.88826 1.00146 0.90448 1.68252 1.11630 1.30517 1.14209 1.22795 0.97363 0.83977 0.92768 1.20383 0.86362 1.05777 0.96513 1.21000 0.78575 1.00947 0.96475 1.44011 1.05083 1.81443 1.04316 1.18408 0.88387 0.86443 0.86470 1.21139 1.00158 1.31490 0.90744 1.21866 0.91554 0.93510 0.86154 1.98280 1.76751 1.96550 1.31381 1.68597 1.06144 1.24442 1.29170 1.19922 0.94818 0.87857 0.80477 1.19715 0.88066 1.42921 0.95236 0.88473 1.27126 1.06817 0.92398 0.93836 1.70234 1.39759 1.26900 0.99132 0.84914 0.73860 0.79694 0.79450 1.18415 1.18855 1.17725 1.68262 1.06539 1.33214 1.31304 1.68248 1.11631 1.30520 1.14211 1.23772 0.88824 1.00146 0.90449 0.89219 0.89668 0.89672 0.78809 0.87731 0.87731 0.92762 0.92747 0.75607 0.85154 0.90395 0.78808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.48 10.06 71.24 0.72 0.24 16 2 C -0.18 -2.36 5.91 -19.69 -0.12 -2.48 16 3 C 0.13 2.15 11.01 84.70 0.93 3.08 16 4 N -0.53 -12.35 10.33 -187.84 -1.94 -14.29 16 5 C 0.30 7.27 6.90 138.75 0.96 8.23 16 6 C -0.05 -1.20 5.77 29.85 0.17 -1.03 16 7 C 0.16 4.59 4.90 86.38 0.42 5.01 16 8 N -0.71 -25.53 5.71 -344.57 -1.97 -27.49 16 9 C 0.45 21.29 7.71 133.39 1.03 22.32 16 10 C -0.40 -19.04 9.23 22.84 0.21 -18.83 16 11 C 0.25 12.88 7.33 84.77 0.62 13.50 16 12 Cl -0.06 -2.52 29.15 -2.72 -0.08 -2.60 16 13 N -0.56 -32.71 7.86 -185.03 -1.45 -34.17 16 14 C 0.41 23.83 7.37 135.16 1.00 24.83 16 15 C -0.42 -23.72 9.37 23.53 0.22 -23.50 16 16 H 0.10 5.18 7.85 -2.91 -0.02 5.15 16 17 C 0.02 1.16 5.50 85.30 0.47 1.63 16 18 N -0.74 -39.95 11.42 21.84 0.25 -39.71 16 19 Si 1.00 37.90 29.56 68.60 2.03 39.93 16 20 H -0.26 -9.43 7.11 99.48 0.71 -8.73 16 21 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 22 H -0.25 -9.27 7.11 99.48 0.71 -8.56 16 23 N -0.66 -35.84 10.39 -191.54 -1.99 -37.83 16 24 N -0.53 -12.35 10.33 -187.84 -1.94 -14.29 16 25 C 0.13 2.15 11.01 84.70 0.93 3.08 16 26 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 27 H 0.08 0.25 8.10 -2.39 -0.02 0.23 16 28 H 0.08 0.25 8.10 -2.39 -0.02 0.23 16 29 H 0.20 1.79 8.06 -2.91 -0.02 1.77 16 30 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.05 1.69 7.97 -2.38 -0.02 1.67 16 33 H 0.05 1.70 7.97 -2.39 -0.02 1.68 16 34 H 0.41 13.21 8.60 -92.71 -0.80 12.41 16 35 H 0.13 5.45 6.85 -2.91 -0.02 5.43 16 36 H 0.29 13.80 8.29 -92.71 -0.77 13.03 16 37 H 0.20 1.79 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -73.10 342.41 0.80 -72.30 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: 0.33 Total: 22.08 kcal Atomic # 6 Polarization: 28.52 SS G_CDS: 7.56 Total: 36.08 kcal Atomic # 7 Polarization: -158.74 SS G_CDS: -9.04 Total: -167.79 kcal Atomic # 14 Polarization: 37.90 SS G_CDS: 2.03 Total: 39.93 kcal Atomic # 17 Polarization: -2.52 SS G_CDS: -0.08 Total: -2.60 kcal Total: -73.10 0.80 -72.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162239742.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.605 kcal (2) G-P(sol) polarization free energy of solvation -73.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds