Wall clock time and date at job start Tue Mar 31 2020 12:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31974 * 119.57244 * 2 1 4 4 C 1.32398 * 121.62437 * 179.97438 * 3 2 1 5 5 N 1.38996 * 119.70888 * 179.97438 * 4 3 2 6 6 C 1.39136 * 120.58424 * 359.97438 * 4 3 2 7 7 C 1.38294 * 119.10285 * 0.02562 * 6 4 3 8 8 C 1.38023 * 119.57090 * 179.97438 * 2 1 3 9 9 C 1.50693 * 120.33405 * 0.02562 * 8 2 1 10 10 N 1.46501 * 109.47478 * 79.99844 * 9 8 2 11 11 C 1.38540 * 119.99817 * 179.97438 * 10 9 8 12 12 C 1.40034 * 120.45495 * 359.71952 * 11 10 9 13 13 C 1.38795 * 118.59545 * 179.78068 * 12 11 10 14 14 Cl 1.73597 * 120.34033 * 180.24455 * 13 12 11 15 15 N 1.32204 * 119.32282 * 0.49392 * 13 12 11 16 16 C 1.33418 * 120.86072 * 359.75250 * 15 13 12 17 17 C 1.41579 * 119.23717 * 180.02562 * 16 15 13 18 18 H 1.08002 * 120.00105 * 179.97438 * 17 16 15 19 19 C 1.40059 * 119.99672 * 359.97438 * 17 16 15 20 20 N 1.30692 * 120.00429 * 359.97438 * 19 17 16 21 21 Si 1.86809 * 119.99690 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46864 * 60.00058 * 21 19 17 23 23 H 1.48492 * 109.46721 * 179.97438 * 21 19 17 24 24 H 1.48490 * 109.47112 * 300.00033 * 21 19 17 25 25 N 1.32572 * 120.44216 * 179.97438 * 11 10 9 26 26 H 1.08994 * 109.47434 * 89.99546 * 1 2 3 27 27 H 1.08999 * 109.47178 * 210.00609 * 1 2 3 28 28 H 1.09009 * 109.46762 * 329.99892 * 1 2 3 29 29 H 0.97005 * 120.00162 * 359.97438 * 5 4 3 30 30 H 0.97002 * 120.00167 * 179.97438 * 5 4 3 31 31 H 1.08004 * 120.45058 * 180.02562 * 6 4 3 32 32 H 1.08001 * 120.75312 * 179.97438 * 7 6 4 33 33 H 1.09006 * 109.47201 * 200.00187 * 9 8 2 34 34 H 1.09002 * 109.47032 * 319.99342 * 9 8 2 35 35 H 0.96993 * 119.99496 * 359.97438 * 10 9 8 36 36 H 1.08006 * 120.70107 * 0.02562 * 12 11 10 37 37 H 0.96999 * 119.99917 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1583 1.1478 0.0000 4 6 3.4814 1.1952 0.0005 5 7 4.1266 2.4264 -0.0001 6 6 4.2318 0.0235 0.0016 7 6 3.5770 -1.1945 0.0016 8 6 2.1881 -1.2004 0.0005 9 6 1.4325 -2.5042 0.0005 10 7 0.9806 -2.8068 -1.3598 11 6 0.2601 -3.9636 -1.6091 12 6 -0.0364 -4.8531 -0.5690 13 6 -0.7645 -5.9980 -0.8613 14 17 -1.1629 -7.1284 0.3945 15 7 -1.1473 -6.2214 -2.1069 16 6 -0.8469 -5.3598 -3.0802 17 6 -1.2746 -5.6328 -4.4019 18 1 -1.0386 -4.9436 -5.1991 19 6 -2.0039 -6.7969 -4.6754 20 7 -2.2891 -7.6313 -3.7108 21 14 -2.5689 -7.1569 -6.4193 22 1 -1.3864 -7.2561 -7.3121 23 1 -3.3152 -8.4404 -6.4426 24 1 -3.4534 -6.0607 -6.8892 25 7 -0.1536 -4.2459 -2.8365 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3633 0.8901 0.5139 29 1 3.6077 3.2459 -0.0012 30 1 5.0958 2.4661 0.0007 31 1 5.3111 0.0647 0.0024 32 1 4.1330 -2.1204 0.0020 33 1 2.0857 -3.3028 0.3525 34 1 0.5690 -2.4237 0.6609 35 1 1.1858 -2.1973 -2.0858 36 1 0.2911 -4.6505 0.4401 37 1 -2.7944 -8.4373 -3.9003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167781662.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:52 Heat of formation + Delta-G solvation = 77.810352 kcal Electronic energy + Delta-G solvation = -23030.591554 eV Core-core repulsion = 19447.529848 eV Total energy + Delta-G solvation = -3583.061705 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.089 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.51977 -38.99512 -36.43893 -35.56045 -34.75857 -33.47771 -32.85675 -31.60422 -30.72903 -29.24542 -27.60816 -26.39110 -25.05842 -22.68386 -22.13514 -21.85225 -21.04568 -17.98850 -17.71032 -17.08786 -16.70349 -16.13992 -15.51289 -15.02941 -14.83851 -14.64540 -14.06302 -13.96478 -13.76620 -13.56415 -13.29867 -13.05624 -12.86299 -12.75614 -12.63848 -12.09245 -11.59439 -11.38065 -11.35337 -11.04890 -10.79579 -10.70422 -10.39700 -10.18359 -9.93690 -9.72737 -9.52485 -9.09127 -8.99987 -8.23107 -7.96312 -7.45467 -7.11866 -6.54610 -4.77938 1.14179 1.30645 2.55734 3.00332 3.00694 3.06804 3.09590 3.16830 3.28127 3.65003 3.88568 4.17708 4.42837 4.64021 4.69832 4.92159 4.93679 5.14073 5.42646 5.61108 5.64423 5.70883 5.83102 5.89243 5.97300 6.08255 6.12195 6.32906 6.38538 6.45574 6.51153 6.85042 6.96021 7.06149 7.15780 7.22964 7.74455 8.10685 8.13702 8.24460 8.56169 8.61918 9.08494 10.11545 10.26338 Molecular weight = 319.09amu Principal moments of inertia in cm(-1) A = 0.016662 B = 0.003053 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.106985 B = 9168.746342 C =10282.972756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.200 3.800 3 N -0.548 5.548 4 C 0.408 3.592 5 N -0.854 5.854 6 C -0.250 4.250 7 C -0.010 4.010 8 C -0.212 4.212 9 C 0.190 3.810 10 N -0.725 5.725 11 C 0.457 3.543 12 C -0.406 4.406 13 C 0.269 3.731 14 Cl -0.083 7.083 15 N -0.528 5.528 16 C 0.436 3.564 17 C -0.395 4.395 18 H 0.095 0.905 19 C 0.066 3.934 20 N -0.702 5.702 21 Si 0.919 3.081 22 H -0.263 1.263 23 H -0.276 1.276 24 H -0.263 1.263 25 N -0.641 5.641 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.402 0.598 30 H 0.407 0.593 31 H 0.129 0.871 32 H 0.135 0.865 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.397 0.603 36 H 0.111 0.889 37 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.330 12.452 7.399 17.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.061 3.939 3 N -0.267 5.267 4 C 0.170 3.830 5 N -0.398 5.398 6 C -0.275 4.275 7 C -0.036 4.036 8 C -0.217 4.217 9 C 0.065 3.935 10 N -0.362 5.362 11 C 0.209 3.791 12 C -0.439 4.439 13 C 0.088 3.912 14 Cl -0.056 7.056 15 N -0.250 5.250 16 C 0.200 3.800 17 C -0.431 4.431 18 H 0.113 0.887 19 C -0.162 4.162 20 N -0.323 5.323 21 Si 0.743 3.257 22 H -0.188 1.188 23 H -0.201 1.201 24 H -0.187 1.187 25 N -0.372 5.372 26 H 0.102 0.898 27 H 0.101 0.899 28 H 0.092 0.908 29 H 0.231 0.769 30 H 0.236 0.764 31 H 0.147 0.853 32 H 0.153 0.847 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.232 0.768 36 H 0.129 0.871 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.396 12.619 6.762 16.597 hybrid contribution 0.902 -0.333 0.121 0.969 sum 9.298 12.286 6.883 16.876 Atomic orbital electron populations 1.20842 0.88564 1.03511 1.03787 1.20819 0.96467 0.86676 0.89922 1.67017 1.07461 1.30101 1.22075 1.18339 0.88560 0.86407 0.89693 1.42194 1.09071 1.04827 1.83666 1.21268 1.00464 0.91885 1.13844 1.21271 0.93453 0.97764 0.91162 1.20410 0.94262 0.95838 1.11156 1.19835 0.96978 0.91865 0.84857 1.44127 1.60653 1.22964 1.08418 1.18126 0.86525 0.84939 0.89463 1.20911 1.21892 1.01497 0.99576 1.21436 0.92074 0.87342 0.90337 1.98293 1.93253 1.63411 1.50610 1.68588 1.26706 1.32384 0.97280 1.19445 0.86247 0.81885 0.92433 1.19315 1.27473 1.04571 0.91698 0.88705 1.26121 0.95105 0.95541 0.99452 1.70139 1.22633 1.06918 1.32628 0.86192 0.79584 0.78475 0.81476 1.18757 1.20111 1.18730 1.68232 1.24851 1.24718 1.19354 0.89797 0.89859 0.90785 0.76866 0.76387 0.85336 0.84687 0.91864 0.91420 0.76840 0.87111 0.91139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 9.76 36.00 0.35 -0.94 16 2 C 0.20 2.57 6.78 -82.61 -0.56 2.01 16 3 N -0.55 -7.08 10.31 -8.67 -0.09 -7.17 16 4 C 0.41 4.48 7.75 -155.03 -1.20 3.28 16 5 N -0.85 -6.25 9.07 31.13 0.28 -5.97 16 6 C -0.25 -2.53 9.94 -39.23 -0.39 -2.92 16 7 C -0.01 -0.11 9.81 -39.32 -0.39 -0.50 16 8 C -0.21 -2.64 5.27 -104.46 -0.55 -3.19 16 9 C 0.19 2.62 4.44 -5.20 -0.02 2.60 16 10 N -0.72 -12.57 5.70 -61.43 -0.35 -12.92 16 11 C 0.46 10.20 7.71 -154.98 -1.19 9.01 16 12 C -0.41 -9.03 9.23 -38.70 -0.36 -9.39 16 13 C 0.27 6.64 7.33 -17.19 -0.13 6.51 16 14 Cl -0.08 -1.77 29.15 -51.86 -1.51 -3.28 16 15 N -0.53 -14.68 7.86 -9.84 -0.08 -14.75 16 16 C 0.44 12.18 7.37 -158.35 -1.17 11.01 16 17 C -0.40 -10.66 9.37 -37.63 -0.35 -11.01 16 18 H 0.09 2.44 7.85 -52.49 -0.41 2.03 16 19 C 0.07 1.65 5.50 -17.35 -0.10 1.55 16 20 N -0.70 -18.46 11.42 55.55 0.63 -17.82 16 21 Si 0.92 18.36 29.56 -169.99 -5.02 13.33 16 22 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 23 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 24 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 25 N -0.64 -16.58 10.39 -11.89 -0.12 -16.70 16 26 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.08 0.97 6.10 -51.93 -0.32 0.65 16 28 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 29 H 0.40 2.64 8.95 -40.82 -0.37 2.27 16 30 H 0.41 1.85 8.82 -40.82 -0.36 1.49 16 31 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 32 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.06 0.86 7.85 -51.93 -0.41 0.45 16 34 H 0.07 0.92 6.24 -51.93 -0.32 0.59 16 35 H 0.40 6.79 8.59 -40.82 -0.35 6.44 16 36 H 0.11 2.15 6.85 -52.48 -0.36 1.79 16 37 H 0.28 6.60 8.29 -40.82 -0.34 6.26 16 LS Contribution 336.96 15.07 5.08 5.08 Total: -1.00 -31.39 336.96 -10.95 -42.35 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -3.72 Total: 9.83 kcal Atomic # 6 Polarization: 14.08 SS G_CDS: -6.05 Total: 8.03 kcal Atomic # 7 Polarization: -75.61 SS G_CDS: 0.28 Total: -75.34 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.02 Total: 13.33 kcal Atomic # 17 Polarization: -1.77 SS G_CDS: -1.51 Total: -3.28 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.39 -10.95 -42.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167781662.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.157 kcal (2) G-P(sol) polarization free energy of solvation -31.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds