Wall clock time and date at job start Tue Mar 31 2020 12:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31974 * 119.57244 * 2 1 4 4 C 1.32398 * 121.62437 * 179.97438 * 3 2 1 5 5 N 1.38996 * 119.70888 * 179.97438 * 4 3 2 6 6 C 1.39136 * 120.58424 * 359.97438 * 4 3 2 7 7 C 1.38294 * 119.10285 * 0.02562 * 6 4 3 8 8 C 1.38023 * 119.57090 * 179.97438 * 2 1 3 9 9 C 1.50693 * 120.33405 * 0.02562 * 8 2 1 10 10 N 1.46501 * 109.47478 * 79.99844 * 9 8 2 11 11 C 1.38540 * 119.99817 * 179.97438 * 10 9 8 12 12 C 1.40034 * 120.45495 * 359.71952 * 11 10 9 13 13 C 1.38795 * 118.59545 * 179.78068 * 12 11 10 14 14 Cl 1.73597 * 120.34033 * 180.24455 * 13 12 11 15 15 N 1.32204 * 119.32282 * 0.49392 * 13 12 11 16 16 C 1.33418 * 120.86072 * 359.75250 * 15 13 12 17 17 C 1.41579 * 119.23717 * 180.02562 * 16 15 13 18 18 H 1.08002 * 120.00105 * 179.97438 * 17 16 15 19 19 C 1.40059 * 119.99672 * 359.97438 * 17 16 15 20 20 N 1.30692 * 120.00429 * 359.97438 * 19 17 16 21 21 Si 1.86809 * 119.99690 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46864 * 60.00058 * 21 19 17 23 23 H 1.48492 * 109.46721 * 179.97438 * 21 19 17 24 24 H 1.48490 * 109.47112 * 300.00033 * 21 19 17 25 25 N 1.32572 * 120.44216 * 179.97438 * 11 10 9 26 26 H 1.08994 * 109.47434 * 89.99546 * 1 2 3 27 27 H 1.08999 * 109.47178 * 210.00609 * 1 2 3 28 28 H 1.09009 * 109.46762 * 329.99892 * 1 2 3 29 29 H 0.97005 * 120.00162 * 359.97438 * 5 4 3 30 30 H 0.97002 * 120.00167 * 179.97438 * 5 4 3 31 31 H 1.08004 * 120.45058 * 180.02562 * 6 4 3 32 32 H 1.08001 * 120.75312 * 179.97438 * 7 6 4 33 33 H 1.09006 * 109.47201 * 200.00187 * 9 8 2 34 34 H 1.09002 * 109.47032 * 319.99342 * 9 8 2 35 35 H 0.96993 * 119.99496 * 359.97438 * 10 9 8 36 36 H 1.08006 * 120.70107 * 0.02562 * 12 11 10 37 37 H 0.96999 * 119.99917 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1583 1.1478 0.0000 4 6 3.4814 1.1952 0.0005 5 7 4.1266 2.4264 -0.0001 6 6 4.2318 0.0235 0.0016 7 6 3.5770 -1.1945 0.0016 8 6 2.1881 -1.2004 0.0005 9 6 1.4325 -2.5042 0.0005 10 7 0.9806 -2.8068 -1.3598 11 6 0.2601 -3.9636 -1.6091 12 6 -0.0364 -4.8531 -0.5690 13 6 -0.7645 -5.9980 -0.8613 14 17 -1.1629 -7.1284 0.3945 15 7 -1.1473 -6.2214 -2.1069 16 6 -0.8469 -5.3598 -3.0802 17 6 -1.2746 -5.6328 -4.4019 18 1 -1.0386 -4.9436 -5.1991 19 6 -2.0039 -6.7969 -4.6754 20 7 -2.2891 -7.6313 -3.7108 21 14 -2.5689 -7.1569 -6.4193 22 1 -1.3864 -7.2561 -7.3121 23 1 -3.3152 -8.4404 -6.4426 24 1 -3.4534 -6.0607 -6.8892 25 7 -0.1536 -4.2459 -2.8365 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3633 0.8901 0.5139 29 1 3.6077 3.2459 -0.0012 30 1 5.0958 2.4661 0.0007 31 1 5.3111 0.0647 0.0024 32 1 4.1330 -2.1204 0.0020 33 1 2.0857 -3.3028 0.3525 34 1 0.5690 -2.4237 0.6609 35 1 1.1858 -2.1973 -2.0858 36 1 0.2911 -4.6505 0.4401 37 1 -2.7944 -8.4373 -3.9003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167781662.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:51 Heat of formation + Delta-G solvation = 57.363282 kcal Electronic energy + Delta-G solvation = -23031.478205 eV Core-core repulsion = 19447.529848 eV Total energy + Delta-G solvation = -3583.948357 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.089 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.43065 -40.78484 -37.71956 -37.29662 -35.96546 -35.13757 -33.83070 -33.14125 -32.14656 -30.73299 -28.65857 -28.28493 -26.16374 -23.98541 -23.53935 -23.31387 -22.28960 -19.77415 -18.53977 -18.31769 -17.90272 -17.82656 -16.60299 -16.35985 -16.05691 -15.82976 -15.68734 -15.46125 -15.10875 -14.89393 -14.64448 -14.46984 -14.12671 -13.82789 -13.69718 -13.18399 -13.08416 -13.02115 -12.76654 -12.71696 -12.44642 -12.00477 -11.92727 -11.59291 -11.50410 -10.89712 -10.85279 -10.59348 -10.41935 -10.07005 -9.37694 -8.76839 -8.73522 -8.39771 -6.75784 0.25743 0.43682 0.68962 1.18515 1.19461 1.43897 1.57564 1.57825 2.22657 2.47384 2.60039 2.78692 3.00744 3.60501 3.76017 3.90647 4.00508 4.08676 4.27207 4.30829 4.52239 4.62122 4.65868 4.69117 4.76929 4.77228 4.84230 5.02076 5.11152 5.16208 5.19649 5.38227 5.42783 5.68005 6.05179 6.20850 6.39736 6.51938 6.56078 6.73432 6.78994 7.27195 7.35022 8.24640 8.40406 Molecular weight = 319.09amu Principal moments of inertia in cm(-1) A = 0.016662 B = 0.003053 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.106985 B = 9168.746342 C =10282.972756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.187 3.813 3 N -0.571 5.571 4 C 0.398 3.602 5 N -0.838 5.838 6 C -0.247 4.247 7 C -0.014 4.014 8 C -0.224 4.224 9 C 0.191 3.809 10 N -0.708 5.708 11 C 0.452 3.548 12 C -0.397 4.397 13 C 0.246 3.754 14 Cl -0.059 7.059 15 N -0.564 5.564 16 C 0.411 3.589 17 C -0.431 4.431 18 H 0.093 0.907 19 C 0.026 3.974 20 N -0.740 5.740 21 Si 0.999 3.001 22 H -0.258 1.258 23 H -0.265 1.265 24 H -0.258 1.258 25 N -0.666 5.666 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.407 0.593 30 H 0.421 0.579 31 H 0.158 0.842 32 H 0.152 0.848 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.398 0.602 36 H 0.140 0.860 37 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.687 13.328 7.715 18.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.049 3.951 3 N -0.291 5.291 4 C 0.159 3.841 5 N -0.383 5.383 6 C -0.271 4.271 7 C -0.040 4.040 8 C -0.229 4.229 9 C 0.067 3.933 10 N -0.343 5.343 11 C 0.204 3.796 12 C -0.429 4.429 13 C 0.067 3.933 14 Cl -0.031 7.031 15 N -0.287 5.287 16 C 0.174 3.826 17 C -0.466 4.466 18 H 0.112 0.888 19 C -0.199 4.199 20 N -0.361 5.361 21 Si 0.818 3.182 22 H -0.182 1.182 23 H -0.189 1.189 24 H -0.182 1.182 25 N -0.398 5.398 26 H 0.092 0.908 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.237 0.763 30 H 0.253 0.747 31 H 0.176 0.824 32 H 0.169 0.831 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.233 0.767 36 H 0.158 0.842 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.816 13.557 7.152 18.201 hybrid contribution 0.633 -0.426 0.206 0.791 sum 10.449 13.131 7.358 18.323 Atomic orbital electron populations 1.20795 0.88547 1.03812 1.03196 1.20912 0.96760 0.87032 0.90366 1.67021 1.08623 1.30175 1.23271 1.18699 0.88305 0.87910 0.89168 1.42202 1.09950 1.03940 1.82203 1.21576 1.01906 0.91111 1.12540 1.21521 0.92955 0.98980 0.90516 1.20251 0.94889 0.94763 1.12991 1.19981 0.97482 0.93073 0.82731 1.44291 1.58886 1.21031 1.10116 1.18452 0.86276 0.86196 0.88692 1.21178 1.20492 1.00408 1.00831 1.21897 0.92357 0.88632 0.90388 1.98284 1.93124 1.62690 1.49000 1.68573 1.28455 1.33280 0.98408 1.19830 0.86906 0.82699 0.93190 1.19650 1.29219 1.05960 0.91778 0.88850 1.27052 0.94354 0.94492 1.03990 1.70222 1.23314 1.07511 1.35070 0.85019 0.79143 0.78622 0.75437 1.18198 1.18874 1.18191 1.68264 1.25805 1.24595 1.21123 0.90789 0.89952 0.90096 0.76312 0.74658 0.82443 0.83073 0.90958 0.90936 0.76667 0.84176 0.90493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.47 9.76 71.24 0.70 -1.77 16 2 C 0.19 4.64 6.78 42.49 0.29 4.93 16 3 N -0.57 -14.02 10.31 -181.34 -1.87 -15.89 16 4 C 0.40 7.88 7.75 133.07 1.03 8.91 16 5 N -0.84 -10.16 9.07 -55.44 -0.50 -10.66 16 6 C -0.25 -4.29 9.94 22.50 0.22 -4.07 16 7 C -0.01 -0.27 9.81 22.44 0.22 -0.05 16 8 C -0.22 -5.24 5.27 -19.76 -0.10 -5.35 16 9 C 0.19 4.98 4.44 85.63 0.38 5.36 16 10 N -0.71 -24.06 5.70 -348.28 -1.99 -26.04 16 11 C 0.45 20.19 7.71 133.39 1.03 21.22 16 12 C -0.40 -17.43 9.23 22.84 0.21 -17.22 16 13 C 0.25 12.21 7.33 84.77 0.62 12.83 16 14 Cl -0.06 -2.47 29.15 -2.72 -0.08 -2.55 16 15 N -0.56 -32.14 7.86 -185.04 -1.45 -33.59 16 16 C 0.41 23.68 7.37 135.16 1.00 24.68 16 17 C -0.43 -23.96 9.37 23.54 0.22 -23.74 16 18 H 0.09 4.98 7.85 -2.91 -0.02 4.96 16 19 C 0.03 1.30 5.50 85.30 0.47 1.77 16 20 N -0.74 -39.70 11.42 21.84 0.25 -39.45 16 21 Si 1.00 37.87 29.56 68.60 2.03 39.90 16 22 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 23 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 24 H -0.26 -9.46 7.11 99.48 0.71 -8.76 16 25 N -0.67 -35.21 10.39 -191.54 -1.99 -37.20 16 26 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.08 1.88 6.10 -2.39 -0.01 1.86 16 28 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 29 H 0.41 4.45 8.95 -92.70 -0.83 3.62 16 30 H 0.42 2.55 8.82 -92.71 -0.82 1.74 16 31 H 0.16 1.75 8.06 -2.91 -0.02 1.72 16 32 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 33 H 0.07 1.79 7.85 -2.38 -0.02 1.77 16 34 H 0.07 1.85 6.24 -2.39 -0.01 1.84 16 35 H 0.40 13.47 8.59 -92.71 -0.80 12.67 16 36 H 0.14 5.18 6.85 -2.91 -0.02 5.16 16 37 H 0.28 13.72 8.29 -92.71 -0.77 12.95 16 Total: -1.00 -69.40 336.96 -0.59 -70.00 By element: Atomic # 1 Polarization: 29.25 SS G_CDS: -1.27 Total: 27.98 kcal Atomic # 6 Polarization: 21.23 SS G_CDS: 6.28 Total: 27.51 kcal Atomic # 7 Polarization: -155.28 SS G_CDS: -7.55 Total: -162.84 kcal Atomic # 14 Polarization: 37.87 SS G_CDS: 2.03 Total: 39.90 kcal Atomic # 17 Polarization: -2.47 SS G_CDS: -0.08 Total: -2.55 kcal Total: -69.40 -0.59 -70.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167781662.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.361 kcal (2) G-P(sol) polarization free energy of solvation -69.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds