Wall clock time and date at job start Tue Mar 31 2020 12:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00049 * 2 1 4 4 H 1.48502 * 109.47249 * 270.00192 * 3 2 1 5 5 H 1.48500 * 109.46969 * 30.00300 * 3 2 1 6 6 H 1.48496 * 109.47218 * 149.99894 * 3 2 1 7 7 C 1.38819 * 120.00131 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99781 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99827 * 359.97438 * 7 2 1 10 10 C 1.47423 * 125.64873 * 0.02562 * 9 7 2 11 11 C 1.54915 * 104.83197 * 155.83894 * 10 9 7 12 12 C 1.55152 * 101.58132 * 37.00796 * 11 10 9 13 13 H 1.08995 * 110.72085 * 83.04206 * 12 11 10 14 14 O 1.42896 * 110.72092 * 206.13723 * 12 11 10 15 15 C 1.35947 * 117.00132 * 203.73873 * 14 12 11 16 16 C 1.38728 * 120.02947 * 174.51249 * 15 14 12 17 17 C 1.38124 * 119.97028 * 179.70174 * 16 15 14 18 18 C 1.38473 * 120.03149 * 0.27721 * 17 16 15 19 19 F 1.35096 * 119.97366 * 179.97438 * 18 17 16 20 20 C 1.38433 * 120.05800 * 359.97438 * 18 17 16 21 21 C 1.50702 * 119.98766 * 180.02562 * 20 18 17 22 22 F 1.39899 * 109.47678 * 179.97438 * 21 20 18 23 23 F 1.39898 * 109.47119 * 299.99936 * 21 20 18 24 24 F 1.39904 * 109.47090 * 59.99791 * 21 20 18 25 25 C 1.38173 * 120.03290 * 0.03619 * 20 18 17 26 26 C 1.47018 * 125.64468 * 179.97438 * 9 7 2 27 27 H 0.96995 * 119.99898 * 359.97438 * 1 2 3 28 28 H 1.08999 * 110.36670 * 36.99682 * 10 9 7 29 29 H 1.09001 * 110.46154 * 274.72363 * 10 9 7 30 30 H 1.09000 * 111.00204 * 278.93449 * 11 10 9 31 31 H 1.08996 * 111.00413 * 155.08778 * 11 10 9 32 32 H 1.08003 * 120.01754 * 359.97438 * 16 15 14 33 33 H 1.08002 * 119.98723 * 180.30089 * 17 16 15 34 34 H 1.08001 * 120.02015 * 179.97438 * 25 20 18 35 35 H 1.09000 * 109.88476 * 61.68314 * 26 9 7 36 36 H 1.09003 * 109.88616 * 300.50910 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1414 -2.5332 -0.0005 11 6 -0.4016 -3.9319 -0.6135 12 6 0.7785 -4.7524 -0.0292 13 1 0.5448 -5.1015 0.9766 14 8 1.1004 -5.8528 -0.8821 15 6 1.7309 -6.9129 -0.3104 16 6 1.9709 -8.0604 -1.0522 17 6 2.6171 -9.1345 -0.4719 18 6 3.0201 -9.0685 0.8512 19 9 3.6515 -10.1199 1.4177 20 6 2.7766 -7.9260 1.5940 21 6 3.2164 -7.8557 3.0337 22 9 2.8630 -6.6125 3.5692 23 9 2.5907 -8.8727 3.7627 24 9 4.6043 -8.0164 3.1057 25 6 2.1302 -6.8502 1.0162 26 6 1.9319 -3.7274 -0.0016 27 1 -0.4850 0.8400 0.0004 28 1 -0.5993 -1.7584 -0.6155 29 1 -0.5289 -2.4870 1.0172 30 1 -0.3520 -3.8969 -1.7018 31 1 -1.3589 -4.3326 -0.2803 32 1 1.6567 -8.1123 -2.0842 33 1 2.8084 -10.0262 -1.0506 34 1 1.9399 -5.9591 1.5961 35 1 2.5285 -3.8651 0.9002 36 1 2.5582 -3.8502 -0.8853 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225601667.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:25 Heat of formation + Delta-G solvation = -172.555970 kcal Electronic energy + Delta-G solvation = -27029.671154 eV Core-core repulsion = 22400.974132 eV Total energy + Delta-G solvation = -4628.697021 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.094 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.35466 -49.20661 -47.78523 -47.76732 -40.46990 -38.12098 -36.24774 -32.67504 -32.21272 -30.05238 -29.20287 -27.66305 -26.26658 -24.71390 -23.20066 -22.37213 -20.47514 -20.40186 -19.14743 -18.66057 -18.58824 -17.65575 -17.16403 -17.05690 -16.56585 -15.97466 -15.28845 -14.91813 -14.76774 -14.61822 -14.46266 -14.41386 -14.18551 -13.99901 -13.91251 -13.86150 -13.60713 -13.39688 -12.79722 -12.67857 -12.56236 -12.20954 -11.92927 -11.70444 -11.29435 -11.07559 -10.84860 -10.58370 -10.39236 -10.14702 -9.94200 -9.76025 -9.67983 -8.75367 -8.37035 -6.97441 -5.75705 -3.18448 0.46155 0.82362 2.40336 3.04216 3.10258 3.35981 3.41273 3.43087 3.43574 3.67833 3.92276 4.20593 4.38701 4.41404 4.62149 4.76161 5.03629 5.11244 5.16893 5.23418 5.39944 5.43287 5.55700 5.62081 5.67650 5.83483 6.08411 6.20802 6.30863 6.36857 6.43789 6.51799 7.32083 7.35982 7.51602 7.72019 8.22959 9.10588 9.70726 10.32625 11.28732 Molecular weight = 319.09amu Principal moments of inertia in cm(-1) A = 0.018773 B = 0.003447 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.176433 B = 8122.180636 C = 8902.724037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 0.917 3.083 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.281 1.281 7 C -0.226 4.226 8 H 0.079 0.921 9 N -0.600 5.600 10 C 0.151 3.849 11 C -0.135 4.135 12 C 0.063 3.937 13 H 0.080 0.920 14 O -0.293 6.293 15 C 0.137 3.863 16 C -0.097 4.097 17 C -0.114 4.114 18 C 0.100 3.900 19 F -0.129 7.129 20 C -0.179 4.179 21 C 0.512 3.488 22 F -0.169 7.169 23 F -0.173 7.173 24 F -0.172 7.172 25 C -0.140 4.140 26 C 0.118 3.882 27 H 0.254 0.746 28 H 0.115 0.885 29 H 0.018 0.982 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.151 0.849 33 H 0.153 0.847 34 H 0.158 0.842 35 H 0.027 0.973 36 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.545 -19.007 0.696 19.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.204 4.204 3 Si 0.747 3.253 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.206 1.206 7 C -0.354 4.354 8 H 0.097 0.903 9 N -0.327 5.327 10 C 0.027 3.973 11 C -0.173 4.173 12 C 0.007 3.993 13 H 0.098 0.902 14 O -0.205 6.205 15 C 0.090 3.910 16 C -0.116 4.116 17 C -0.133 4.133 18 C 0.080 3.920 19 F -0.108 7.108 20 C -0.181 4.181 21 C 0.458 3.542 22 F -0.151 7.151 23 F -0.155 7.155 24 F -0.153 7.153 25 C -0.159 4.159 26 C -0.009 4.009 27 H 0.065 0.935 28 H 0.133 0.867 29 H 0.036 0.964 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.169 0.831 33 H 0.170 0.830 34 H 0.175 0.825 35 H 0.045 0.955 36 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.479 -18.764 0.576 18.936 hybrid contribution 0.742 0.682 0.701 1.227 sum 3.221 -18.082 1.276 18.411 Atomic orbital electron populations 1.69740 1.04945 1.25062 1.57341 1.24797 0.95760 0.97809 1.02005 0.86032 0.78560 0.83006 0.77661 1.21450 1.21535 1.20639 1.19081 0.90606 0.82131 1.43595 0.90293 1.44351 1.01835 0.99349 1.87163 1.22026 0.84852 0.91776 0.98678 1.23229 0.94665 0.97673 1.01757 1.23871 0.98050 0.84103 0.93276 0.90206 1.86240 1.71143 1.24938 1.38201 1.18981 0.92702 0.88694 0.90667 1.20556 0.99672 0.90138 1.01248 1.20926 0.99457 1.00309 0.92563 1.17098 0.98582 0.83983 0.92311 1.91545 1.79539 1.54730 1.84971 1.19810 1.08099 0.96987 0.93199 1.18028 0.75362 0.74033 0.86793 1.93217 1.91704 1.42409 1.87734 1.93228 1.82318 1.60202 1.79708 1.93236 1.30006 1.95241 1.96852 1.21182 0.99905 0.99223 0.95568 1.21705 0.93630 0.86527 0.99011 0.93520 0.86702 0.96397 0.90571 0.91299 0.83100 0.82966 0.82487 0.95491 0.94450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.03 10.09 55.49 0.56 -25.47 16 2 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 3 Si 0.92 21.61 29.55 -169.99 -5.02 16.58 16 4 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.23 -6.17 10.27 -15.06 -0.15 -6.32 16 8 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 9 N -0.60 -14.91 3.39 -170.07 -0.58 -15.48 16 10 C 0.15 3.49 5.89 -2.53 -0.01 3.47 16 11 C -0.13 -2.41 6.81 -24.58 -0.17 -2.57 16 12 C 0.06 1.05 2.74 -24.89 -0.07 0.98 16 13 H 0.08 1.22 6.25 -51.93 -0.32 0.90 16 14 O -0.29 -4.41 9.87 -19.57 -0.19 -4.60 16 15 C 0.14 1.75 6.67 -39.24 -0.26 1.49 16 16 C -0.10 -0.98 9.98 -39.44 -0.39 -1.37 16 17 C -0.11 -1.04 10.02 -39.54 -0.40 -1.44 16 18 C 0.10 1.14 7.13 -39.42 -0.28 0.86 16 19 F -0.13 -1.54 16.45 2.25 0.04 -1.50 16 20 C -0.18 -2.25 5.37 -104.57 -0.56 -2.81 16 21 C 0.51 6.68 3.03 36.01 0.11 6.79 16 22 F -0.17 -2.31 15.97 2.25 0.04 -2.28 16 23 F -0.17 -2.24 17.05 2.25 0.04 -2.20 16 24 F -0.17 -2.30 17.05 2.25 0.04 -2.26 16 25 C -0.14 -1.83 8.29 -39.44 -0.33 -2.15 16 26 C 0.12 2.39 6.81 -3.06 -0.02 2.37 16 27 H 0.25 6.95 8.31 -40.82 -0.34 6.62 16 28 H 0.12 2.98 5.87 -51.93 -0.30 2.68 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.15 1.18 8.06 -52.48 -0.42 0.75 16 33 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.16 2.13 4.72 -52.49 -0.25 1.88 16 35 H 0.03 0.54 7.81 -51.93 -0.41 0.13 16 36 H 0.04 0.78 8.06 -51.93 -0.42 0.36 16 LS Contribution 318.64 15.07 4.80 4.80 Total: -1.00 -28.94 318.64 -6.28 -35.22 By element: Atomic # 1 Polarization: 1.57 SS G_CDS: -3.36 Total: -1.79 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -2.63 Total: -1.02 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: -0.02 Total: -40.95 kcal Atomic # 8 Polarization: -4.41 SS G_CDS: -0.19 Total: -4.60 kcal Atomic # 9 Polarization: -8.40 SS G_CDS: 0.15 Total: -8.25 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.94 -6.28 -35.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225601667.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.333 kcal (2) G-P(sol) polarization free energy of solvation -28.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds