Wall clock time and date at job start Tue Mar 31 2020 12:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86808 * 120.00171 * 2 1 4 4 H 1.48500 * 109.47060 * 264.79714 * 3 2 1 5 5 H 1.48501 * 109.46748 * 24.79413 * 3 2 1 6 6 H 1.48491 * 109.47114 * 144.79597 * 3 2 1 7 7 C 1.38813 * 120.00382 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99448 * 340.88828 * 7 2 1 9 9 N 1.36937 * 120.00341 * 160.87752 * 7 2 1 10 10 C 1.47429 * 125.64840 * 152.55291 * 9 7 2 11 11 C 1.54910 * 104.83006 * 155.83975 * 10 9 7 12 12 C 1.55155 * 101.58289 * 37.01159 * 11 10 9 13 13 H 1.09001 * 110.72214 * 83.03468 * 12 11 10 14 14 O 1.42903 * 110.71893 * 206.13283 * 12 11 10 15 15 C 1.35892 * 116.99914 * 205.37636 * 14 12 11 16 16 C 1.38712 * 120.04476 * 175.37404 * 15 14 12 17 17 C 1.38336 * 119.92396 * 179.97438 * 16 15 14 18 18 F 1.35094 * 119.99925 * 180.02562 * 17 16 15 19 19 C 1.38520 * 120.00398 * 359.97438 * 17 16 15 20 20 C 1.38205 * 120.08801 * 0.02562 * 19 17 16 21 21 C 1.50696 * 119.96334 * 179.97438 * 20 19 17 22 22 F 1.39897 * 109.47287 * 0.02562 * 21 20 19 23 23 F 1.39902 * 109.47078 * 120.00525 * 21 20 19 24 24 F 1.39896 * 109.47349 * 240.00121 * 21 20 19 25 25 C 1.38178 * 120.07898 * 0.27863 * 20 19 17 26 26 C 1.47323 * 125.61499 * 332.69871 * 9 7 2 27 27 H 0.97002 * 120.00136 * 359.97438 * 1 2 3 28 28 H 1.09004 * 110.36184 * 37.00106 * 10 9 7 29 29 H 1.09001 * 110.46099 * 274.72752 * 10 9 7 30 30 H 1.09002 * 111.00275 * 278.93362 * 11 10 9 31 31 H 1.08997 * 111.00126 * 155.08454 * 11 10 9 32 32 H 1.08003 * 120.03642 * 0.02791 * 16 15 14 33 33 H 1.08007 * 119.95857 * 180.02562 * 19 17 16 34 34 H 1.08002 * 120.00628 * 179.69883 * 25 20 19 35 35 H 1.08998 * 110.05960 * 61.75227 * 26 9 7 36 36 H 1.08992 * 109.84827 * 300.48739 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6077 1.9830 -1.3943 5 1 1.3969 2.6819 0.5871 6 1 3.4884 1.4744 0.8071 7 6 2.0103 -1.2021 0.0005 8 1 1.5149 -2.1115 0.3072 9 7 3.3230 -1.2350 -0.3879 10 6 4.3287 -2.2134 0.0646 11 6 5.3950 -2.2345 -1.0589 12 6 5.4336 -0.7416 -1.4798 13 1 6.0817 -0.1702 -0.8153 14 8 5.8616 -0.6099 -2.8369 15 6 6.4446 0.5662 -3.1885 16 6 6.9700 0.7275 -4.4621 17 6 7.5624 1.9260 -4.8175 18 9 8.0741 2.0849 -6.0576 19 6 7.6301 2.9635 -3.9022 20 6 7.1068 2.8032 -2.6332 21 6 7.1825 3.9335 -1.6395 22 9 7.8200 5.0305 -2.2287 23 9 5.8895 4.2998 -1.2504 24 9 7.9075 3.5199 -0.5169 25 6 6.5198 1.6054 -2.2723 26 6 3.9641 -0.2963 -1.3251 27 1 -0.4850 0.8400 0.0004 28 1 3.8759 -3.1986 0.1766 29 1 4.7755 -1.8928 1.0058 30 1 5.0763 -2.8661 -1.8881 31 1 6.3622 -2.5569 -0.6735 32 1 6.9157 -0.0814 -5.1757 33 1 8.0925 3.8990 -4.1806 34 1 6.1156 1.4797 -1.2787 35 1 3.9239 0.7169 -0.9254 36 1 3.4609 -0.3363 -2.2911 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225914565.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:27 Heat of formation + Delta-G solvation = -168.351219 kcal Electronic energy + Delta-G solvation = -27346.037571 eV Core-core repulsion = 22717.522882 eV Total energy + Delta-G solvation = -4628.514690 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.094 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.37737 -49.29295 -47.90589 -47.80676 -40.61594 -38.35673 -36.56764 -32.67441 -32.06562 -30.43810 -29.66307 -28.32452 -26.49573 -24.61164 -23.16832 -22.54551 -20.93155 -20.50398 -19.35108 -18.69349 -18.66615 -17.37815 -17.11486 -16.77958 -16.66198 -16.39708 -16.05372 -15.83711 -14.83260 -14.74332 -14.60604 -14.46839 -14.25773 -14.10831 -13.98255 -13.97048 -13.45272 -13.24065 -13.02344 -12.76759 -12.65737 -12.46394 -12.23001 -12.11989 -11.64874 -11.33737 -11.26025 -10.87935 -10.66842 -10.41460 -10.03170 -9.54721 -9.42750 -8.71959 -8.61447 -7.11012 -6.05417 -3.43964 0.41992 0.77691 2.32462 2.81947 2.96163 3.26675 3.36534 3.38221 3.42798 3.66154 4.13574 4.16711 4.43031 4.48304 4.51518 4.62748 4.69033 4.81581 4.87646 5.08671 5.10996 5.11755 5.32460 5.55579 5.63726 5.67315 5.71503 5.84659 5.99132 6.10706 6.23076 6.40335 6.42949 6.60808 7.17459 7.65036 8.22618 8.71504 9.56778 10.04899 11.10753 Molecular weight = 319.09amu Principal moments of inertia in cm(-1) A = 0.013020 B = 0.005058 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.962603 B = 5534.998731 C = 6628.919685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.030 3.970 3 Si 0.883 3.117 4 H -0.283 1.283 5 H -0.299 1.299 6 H -0.276 1.276 7 C -0.249 4.249 8 H 0.093 0.907 9 N -0.604 5.604 10 C 0.131 3.869 11 C -0.122 4.122 12 C 0.062 3.938 13 H 0.084 0.916 14 O -0.288 6.288 15 C 0.174 3.826 16 C -0.161 4.161 17 C 0.141 3.859 18 F -0.126 7.126 19 C -0.153 4.153 20 C -0.113 4.113 21 C 0.510 3.490 22 F -0.175 7.175 23 F -0.169 7.169 24 F -0.172 7.172 25 C -0.173 4.173 26 C 0.101 3.899 27 H 0.265 0.735 28 H 0.059 0.941 29 H 0.030 0.970 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.155 0.845 33 H 0.152 0.848 34 H 0.148 0.852 35 H 0.031 0.969 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.672 4.276 -6.973 20.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.170 4.170 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.227 1.227 6 H -0.203 1.203 7 C -0.376 4.376 8 H 0.111 0.889 9 N -0.333 5.333 10 C 0.006 3.994 11 C -0.160 4.160 12 C 0.006 3.994 13 H 0.102 0.898 14 O -0.200 6.200 15 C 0.126 3.874 16 C -0.181 4.181 17 C 0.122 3.878 18 F -0.105 7.105 19 C -0.172 4.172 20 C -0.115 4.115 21 C 0.456 3.544 22 F -0.156 7.156 23 F -0.150 7.150 24 F -0.153 7.153 25 C -0.192 4.192 26 C -0.024 4.024 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.048 0.952 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.173 0.827 33 H 0.170 0.830 34 H 0.166 0.834 35 H 0.048 0.952 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 18.382 4.216 -7.062 20.138 hybrid contribution 0.439 1.493 0.161 1.565 sum 18.821 5.709 -6.901 20.844 Atomic orbital electron populations 1.69788 1.05574 1.26829 1.52395 1.25184 0.95218 0.97511 0.99066 0.86939 0.79243 0.84579 0.77853 1.21004 1.22652 1.20276 1.18625 0.82548 0.94878 1.41539 0.88946 1.44631 1.07103 1.33037 1.48515 1.21696 0.88960 0.94989 0.93766 1.22904 1.00124 0.92889 1.00092 1.23818 0.96610 0.99740 0.79202 0.89771 1.86192 1.71693 1.31092 1.31040 1.18464 0.90916 0.85702 0.92275 1.20479 1.02782 0.98437 0.96378 1.16927 0.96853 0.93665 0.80396 1.91548 1.84475 1.95874 1.38564 1.20736 1.03873 1.00425 0.92172 1.19431 1.03656 0.94009 0.94390 1.18141 0.74242 0.81803 0.80249 1.93171 1.82215 1.56460 1.83736 1.93281 1.37743 1.92355 1.91636 1.93236 1.77951 1.90125 1.54018 1.21179 1.03564 0.92612 1.01876 1.22170 0.90248 0.94261 0.95768 0.92456 0.92240 0.95185 0.89646 0.90431 0.82740 0.83047 0.83409 0.95183 0.92681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.57 13.97 55.49 0.78 -26.79 16 2 C 0.03 0.87 5.45 -17.43 -0.10 0.78 16 3 Si 0.88 22.60 24.47 -169.99 -4.16 18.44 16 4 H -0.28 -7.05 6.85 56.52 0.39 -6.66 16 5 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 6 H -0.28 -6.86 6.99 56.52 0.40 -6.47 16 7 C -0.25 -6.92 10.55 -15.06 -0.16 -7.08 16 8 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 9 N -0.60 -14.14 3.10 -169.83 -0.53 -14.67 16 10 C 0.13 2.38 7.23 -2.53 -0.02 2.36 16 11 C -0.12 -1.78 6.81 -24.58 -0.17 -1.95 16 12 C 0.06 1.00 2.75 -24.90 -0.07 0.94 16 13 H 0.08 1.22 6.10 -51.93 -0.32 0.91 16 14 O -0.29 -4.33 9.86 -19.40 -0.19 -4.52 16 15 C 0.17 2.36 6.68 -39.22 -0.26 2.10 16 16 C -0.16 -1.87 9.97 -39.37 -0.39 -2.26 16 17 C 0.14 1.56 7.30 -39.44 -0.29 1.27 16 18 F -0.13 -1.36 17.27 2.25 0.04 -1.32 16 19 C -0.15 -1.67 9.41 -39.49 -0.37 -2.04 16 20 C -0.11 -1.42 5.37 -104.66 -0.56 -1.98 16 21 C 0.51 6.43 3.31 36.00 0.12 6.55 16 22 F -0.17 -1.99 15.97 2.25 0.04 -1.96 16 23 F -0.17 -2.47 17.24 2.25 0.04 -2.43 16 24 F -0.17 -2.19 17.23 2.25 0.04 -2.15 16 25 C -0.17 -2.39 8.51 -39.42 -0.34 -2.73 16 26 C 0.10 2.13 5.30 -2.90 -0.02 2.11 16 27 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.15 1.51 8.06 -52.48 -0.42 1.09 16 33 H 0.15 1.36 7.15 -52.48 -0.38 0.98 16 34 H 0.15 2.14 5.76 -52.49 -0.30 1.83 16 35 H 0.03 0.69 3.23 -51.93 -0.17 0.52 16 36 H 0.06 1.24 8.06 -51.93 -0.42 0.82 16 LS Contribution 315.98 15.07 4.76 4.76 Total: -1.00 -30.13 315.98 -5.08 -35.20 By element: Atomic # 1 Polarization: 0.63 SS G_CDS: -3.27 Total: -2.64 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -2.61 Total: -1.92 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: 0.25 Total: -41.46 kcal Atomic # 8 Polarization: -4.33 SS G_CDS: -0.19 Total: -4.52 kcal Atomic # 9 Polarization: -8.01 SS G_CDS: 0.15 Total: -7.86 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.16 Total: 18.44 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.13 -5.08 -35.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225914565.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.150 kcal (2) G-P(sol) polarization free energy of solvation -30.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds