Wall clock time and date at job start Tue Mar 31 2020 12:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86808 * 120.00171 * 2 1 4 4 H 1.48500 * 109.47060 * 264.79714 * 3 2 1 5 5 H 1.48501 * 109.46748 * 24.79413 * 3 2 1 6 6 H 1.48491 * 109.47114 * 144.79597 * 3 2 1 7 7 C 1.38813 * 120.00382 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99448 * 340.88828 * 7 2 1 9 9 N 1.36937 * 120.00341 * 160.87752 * 7 2 1 10 10 C 1.47429 * 125.64840 * 152.55291 * 9 7 2 11 11 C 1.54910 * 104.83006 * 155.83975 * 10 9 7 12 12 C 1.55155 * 101.58289 * 37.01159 * 11 10 9 13 13 H 1.09001 * 110.72214 * 83.03468 * 12 11 10 14 14 O 1.42903 * 110.71893 * 206.13283 * 12 11 10 15 15 C 1.35892 * 116.99914 * 205.37636 * 14 12 11 16 16 C 1.38712 * 120.04476 * 175.37404 * 15 14 12 17 17 C 1.38336 * 119.92396 * 179.97438 * 16 15 14 18 18 F 1.35094 * 119.99925 * 180.02562 * 17 16 15 19 19 C 1.38520 * 120.00398 * 359.97438 * 17 16 15 20 20 C 1.38205 * 120.08801 * 0.02562 * 19 17 16 21 21 C 1.50696 * 119.96334 * 179.97438 * 20 19 17 22 22 F 1.39897 * 109.47287 * 0.02562 * 21 20 19 23 23 F 1.39902 * 109.47078 * 120.00525 * 21 20 19 24 24 F 1.39896 * 109.47349 * 240.00121 * 21 20 19 25 25 C 1.38178 * 120.07898 * 0.27863 * 20 19 17 26 26 C 1.47323 * 125.61499 * 332.69871 * 9 7 2 27 27 H 0.97002 * 120.00136 * 359.97438 * 1 2 3 28 28 H 1.09004 * 110.36184 * 37.00106 * 10 9 7 29 29 H 1.09001 * 110.46099 * 274.72752 * 10 9 7 30 30 H 1.09002 * 111.00275 * 278.93362 * 11 10 9 31 31 H 1.08997 * 111.00126 * 155.08454 * 11 10 9 32 32 H 1.08003 * 120.03642 * 0.02791 * 16 15 14 33 33 H 1.08007 * 119.95857 * 180.02562 * 19 17 16 34 34 H 1.08002 * 120.00628 * 179.69883 * 25 20 19 35 35 H 1.08998 * 110.05960 * 61.75227 * 26 9 7 36 36 H 1.08992 * 109.84827 * 300.48739 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6077 1.9830 -1.3943 5 1 1.3969 2.6819 0.5871 6 1 3.4884 1.4744 0.8071 7 6 2.0103 -1.2021 0.0005 8 1 1.5149 -2.1115 0.3072 9 7 3.3230 -1.2350 -0.3879 10 6 4.3287 -2.2134 0.0646 11 6 5.3950 -2.2345 -1.0589 12 6 5.4336 -0.7416 -1.4798 13 1 6.0817 -0.1702 -0.8153 14 8 5.8616 -0.6099 -2.8369 15 6 6.4446 0.5662 -3.1885 16 6 6.9700 0.7275 -4.4621 17 6 7.5624 1.9260 -4.8175 18 9 8.0741 2.0849 -6.0576 19 6 7.6301 2.9635 -3.9022 20 6 7.1068 2.8032 -2.6332 21 6 7.1825 3.9335 -1.6395 22 9 7.8200 5.0305 -2.2287 23 9 5.8895 4.2998 -1.2504 24 9 7.9075 3.5199 -0.5169 25 6 6.5198 1.6054 -2.2723 26 6 3.9641 -0.2963 -1.3251 27 1 -0.4850 0.8400 0.0004 28 1 3.8759 -3.1986 0.1766 29 1 4.7755 -1.8928 1.0058 30 1 5.0763 -2.8661 -1.8881 31 1 6.3622 -2.5569 -0.6735 32 1 6.9157 -0.0814 -5.1757 33 1 8.0925 3.8990 -4.1806 34 1 6.1156 1.4797 -1.2787 35 1 3.9239 0.7169 -0.9254 36 1 3.4609 -0.3363 -2.2911 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225914565.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:27 Heat of formation + Delta-G solvation = -185.931155 kcal Electronic energy + Delta-G solvation = -27346.799895 eV Core-core repulsion = 22717.522882 eV Total energy + Delta-G solvation = -4629.277013 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.094 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -51.36423 -50.15141 -48.86700 -48.83028 -41.69360 -39.57020 -37.93144 -34.58390 -33.15452 -31.76882 -31.01544 -29.78328 -27.48488 -26.40779 -24.31861 -23.53314 -22.41117 -21.89306 -20.38561 -19.68335 -19.65692 -19.15831 -18.31786 -18.05060 -17.72304 -17.47080 -17.07581 -16.90011 -16.24369 -15.88021 -15.72820 -15.60059 -15.50055 -15.24890 -15.04766 -14.97918 -14.96849 -14.73813 -14.35121 -14.05542 -13.96796 -13.83910 -13.36181 -13.27744 -13.06821 -12.93645 -12.59589 -12.48808 -12.36936 -11.92232 -11.68699 -11.39057 -10.82323 -10.35678 -9.65449 -9.05822 -8.27200 -5.60580 -0.51589 -0.16157 1.21322 1.28824 1.35492 1.37760 1.72094 2.01639 2.31641 2.40259 2.70713 2.94648 3.16336 3.18015 3.30120 3.47000 3.49592 3.64508 3.67534 3.72343 3.88138 3.94409 4.14107 4.34211 4.41598 4.60722 4.65688 4.72926 4.76060 4.83683 4.93523 4.97656 5.25813 5.33606 5.67695 6.02467 6.07678 6.67728 7.43585 8.01501 8.93092 Molecular weight = 319.09amu Principal moments of inertia in cm(-1) A = 0.013020 B = 0.005058 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.962603 B = 5534.998731 C = 6628.919685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.026 4.026 3 Si 0.938 3.062 4 H -0.277 1.277 5 H -0.306 1.306 6 H -0.264 1.264 7 C -0.237 4.237 8 H 0.064 0.936 9 N -0.624 5.624 10 C 0.122 3.878 11 C -0.106 4.106 12 C 0.075 3.925 13 H 0.105 0.895 14 O -0.291 6.291 15 C 0.155 3.845 16 C -0.151 4.151 17 C 0.145 3.855 18 F -0.121 7.121 19 C -0.140 4.140 20 C -0.120 4.120 21 C 0.512 3.488 22 F -0.166 7.166 23 F -0.183 7.183 24 F -0.173 7.173 25 C -0.185 4.185 26 C 0.095 3.905 27 H 0.264 0.736 28 H 0.061 0.939 29 H 0.044 0.956 30 H 0.086 0.914 31 H 0.122 0.878 32 H 0.173 0.827 33 H 0.173 0.827 34 H 0.138 0.862 35 H 0.017 0.983 36 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.846 4.583 -7.961 23.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.222 4.222 3 Si 0.768 3.232 4 H -0.204 1.204 5 H -0.234 1.234 6 H -0.189 1.189 7 C -0.366 4.366 8 H 0.082 0.918 9 N -0.353 5.353 10 C -0.002 4.002 11 C -0.143 4.143 12 C 0.018 3.982 13 H 0.122 0.878 14 O -0.204 6.204 15 C 0.108 3.892 16 C -0.170 4.170 17 C 0.125 3.875 18 F -0.100 7.100 19 C -0.158 4.158 20 C -0.122 4.122 21 C 0.458 3.542 22 F -0.148 7.148 23 F -0.164 7.164 24 F -0.154 7.154 25 C -0.204 4.204 26 C -0.030 4.030 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.105 0.895 31 H 0.140 0.860 32 H 0.191 0.809 33 H 0.191 0.809 34 H 0.156 0.844 35 H 0.035 0.965 36 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 21.617 4.508 -8.058 23.507 hybrid contribution -0.495 1.348 0.390 1.488 sum 21.122 5.856 -7.668 23.221 Atomic orbital electron populations 1.69909 1.07087 1.27364 1.55273 1.25763 0.95790 1.00558 1.00102 0.86027 0.78238 0.80720 0.78175 1.20402 1.23410 1.18905 1.18596 0.84722 0.93744 1.39555 0.91811 1.44759 1.06700 1.34447 1.49379 1.21958 0.88800 0.93626 0.95784 1.22865 1.00855 0.91906 0.98719 1.23627 0.93322 1.00734 0.80489 0.87766 1.86176 1.72151 1.31814 1.30227 1.18596 0.92101 0.85384 0.93089 1.20664 1.01459 0.99101 0.95809 1.16892 0.96602 0.93473 0.80524 1.91570 1.84335 1.95815 1.38246 1.20966 1.02442 1.01153 0.91281 1.19418 1.04241 0.93566 0.94971 1.18140 0.73721 0.82065 0.80269 1.93185 1.81947 1.56091 1.83536 1.93252 1.38868 1.92514 1.91815 1.93232 1.77863 1.90157 1.54179 1.21162 1.04203 0.93326 1.01683 1.22203 0.93655 0.93283 0.93893 0.92682 0.92058 0.93782 0.89526 0.86024 0.80943 0.80933 0.84385 0.96525 0.94942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.06 13.97 21.65 0.30 -59.76 16 2 C -0.03 -1.56 5.45 84.86 0.46 -1.09 16 3 Si 0.94 47.55 24.47 68.60 1.68 49.23 16 4 H -0.28 -13.58 6.85 99.48 0.68 -12.90 16 5 H -0.31 -15.65 7.11 99.48 0.71 -14.95 16 6 H -0.26 -12.61 6.99 99.48 0.70 -11.91 16 7 C -0.24 -13.51 10.55 84.03 0.89 -12.62 16 8 H 0.06 3.90 8.06 -2.91 -0.02 3.88 16 9 N -0.62 -29.01 3.10 -691.21 -2.14 -31.15 16 10 C 0.12 4.20 7.23 86.85 0.63 4.83 16 11 C -0.11 -2.73 6.81 31.99 0.22 -2.51 16 12 C 0.07 2.22 2.75 31.78 0.09 2.31 16 13 H 0.10 2.71 6.10 -2.39 -0.01 2.70 16 14 O -0.29 -8.04 9.86 -92.34 -0.91 -8.95 16 15 C 0.15 3.84 6.68 22.50 0.15 3.99 16 16 C -0.15 -3.05 9.97 22.41 0.22 -2.82 16 17 C 0.14 2.73 7.30 22.36 0.16 2.90 16 18 F -0.12 -2.21 17.27 44.97 0.78 -1.43 16 19 C -0.14 -2.62 9.41 22.33 0.21 -2.41 16 20 C -0.12 -2.73 5.37 -19.89 -0.11 -2.84 16 21 C 0.51 11.94 3.31 71.23 0.24 12.18 16 22 F -0.17 -3.41 15.97 44.97 0.72 -2.69 16 23 F -0.18 -5.11 17.24 44.97 0.78 -4.34 16 24 F -0.17 -4.09 17.23 44.97 0.77 -3.31 16 25 C -0.18 -4.72 8.51 22.38 0.19 -4.53 16 26 C 0.09 3.93 5.30 86.67 0.46 4.39 16 27 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 28 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 29 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.17 2.79 8.06 -2.91 -0.02 2.77 16 33 H 0.17 2.47 7.15 -2.91 -0.02 2.45 16 34 H 0.14 3.76 5.76 -2.91 -0.02 3.74 16 35 H 0.02 0.76 3.23 -2.39 -0.01 0.76 16 36 H 0.03 1.47 8.06 -2.39 -0.02 1.45 16 Total: -1.00 -66.59 315.98 6.89 -59.70 By element: Atomic # 1 Polarization: -0.18 SS G_CDS: 1.11 Total: 0.93 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: 3.81 Total: 1.76 kcal Atomic # 7 Polarization: -89.06 SS G_CDS: -1.84 Total: -90.90 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: -0.91 Total: -8.95 kcal Atomic # 9 Polarization: -14.81 SS G_CDS: 3.04 Total: -11.77 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 1.68 Total: 49.23 kcal Total: -66.59 6.89 -59.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225914565.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.230 kcal (2) G-P(sol) polarization free energy of solvation -66.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds