Wall clock time and date at job start Tue Mar 31 2020 12:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86803 * 119.99595 * 2 1 4 4 H 1.48502 * 109.47223 * 270.00087 * 3 2 1 5 5 H 1.48503 * 109.46921 * 30.00521 * 3 2 1 6 6 H 1.48499 * 109.46955 * 150.00275 * 3 2 1 7 7 C 1.38803 * 120.00019 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99843 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00371 * 0.02562 * 7 2 1 10 10 C 1.47421 * 125.64746 * 0.02562 * 9 7 2 11 11 C 1.54910 * 104.83636 * 155.83974 * 10 9 7 12 12 C 1.55162 * 101.57856 * 37.00982 * 11 10 9 13 13 H 1.09003 * 110.72103 * 83.04203 * 12 11 10 14 14 O 1.42904 * 110.71879 * 206.13659 * 12 11 10 15 15 C 1.35952 * 116.99650 * 203.81510 * 14 12 11 16 16 C 1.38660 * 120.06699 * 354.44774 * 15 14 12 17 17 C 1.38180 * 119.97037 * 180.02562 * 16 15 14 18 18 C 1.38266 * 120.09486 * 0.27756 * 17 16 15 19 19 C 1.38250 * 120.12575 * 359.44488 * 18 17 16 20 20 C 1.50696 * 119.98672 * 180.27976 * 19 18 17 21 21 F 1.39898 * 109.47054 * 0.27563 * 20 19 18 22 22 F 1.39897 * 109.47196 * 120.27558 * 20 19 18 23 23 F 1.39906 * 109.47259 * 240.27743 * 20 19 18 24 24 C 1.38337 * 120.03176 * 0.55190 * 19 18 17 25 25 F 1.35098 * 120.05391 * 179.74308 * 24 19 18 26 26 C 1.47325 * 125.61983 * 180.16888 * 9 7 2 27 27 H 0.96998 * 120.00069 * 359.97438 * 1 2 3 28 28 H 1.09000 * 110.36724 * 36.99804 * 10 9 7 29 29 H 1.09004 * 110.46445 * 274.72390 * 10 9 7 30 30 H 1.08997 * 111.00239 * 278.93904 * 11 10 9 31 31 H 1.08996 * 111.00604 * 155.08279 * 11 10 9 32 32 H 1.08001 * 120.01368 * 0.04083 * 16 15 14 33 33 H 1.08003 * 119.95235 * 179.97438 * 17 16 15 34 34 H 1.07997 * 119.93164 * 179.70663 * 18 17 16 35 35 H 1.08997 * 110.06281 * 61.74405 * 26 9 7 36 36 H 1.09005 * 109.84332 * 300.48315 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4475 2.6527 0.7002 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0016 10 6 -0.1414 -2.5332 -0.0028 11 6 -0.4011 -3.9316 -0.6165 12 6 0.7786 -4.7524 -0.0316 13 1 0.5441 -5.1019 0.9740 14 8 1.1012 -5.8525 -0.8847 15 6 1.7298 -6.9135 -0.3126 16 6 2.1327 -6.8504 1.0127 17 6 2.7719 -7.9298 1.5921 18 6 3.0156 -9.0710 0.8505 19 6 2.6106 -9.1404 -0.4695 20 6 2.8722 -10.3882 -1.2730 21 9 3.5259 -11.3303 -0.4717 22 9 1.6572 -10.9186 -1.7196 23 9 3.6766 -10.0739 -2.3738 24 6 1.9702 -8.0629 -1.0548 25 9 1.5788 -8.1283 -2.3462 26 6 1.9339 -3.7298 0.0013 27 1 -0.4850 0.8400 0.0004 28 1 -0.5988 -1.7581 -0.6177 29 1 -0.5297 -2.4875 1.0147 30 1 -0.3506 -3.8961 -1.7047 31 1 -1.3586 -4.3324 -0.2842 32 1 1.9467 -5.9580 1.5919 33 1 3.0859 -7.8801 2.6242 34 1 3.5196 -9.9113 1.3046 35 1 2.5271 -3.8696 0.9050 36 1 2.5630 -3.8528 -0.8804 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225924270.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:32 Heat of formation + Delta-G solvation = -187.024019 kcal Electronic energy + Delta-G solvation = -26797.479639 eV Core-core repulsion = 22168.155236 eV Total energy + Delta-G solvation = -4629.324403 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.094 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -51.33873 -50.12970 -48.76774 -48.76575 -41.45900 -39.43606 -37.84225 -34.35189 -32.91171 -31.60854 -30.78702 -29.18306 -27.26713 -26.52061 -23.95759 -23.69779 -22.18659 -21.70722 -20.10945 -19.65639 -19.64110 -19.08941 -18.35919 -18.27823 -17.64462 -17.17673 -16.84082 -16.37398 -15.93389 -15.80885 -15.61388 -15.50657 -15.31619 -15.18020 -14.94447 -14.91153 -14.89522 -14.45495 -14.20693 -13.93742 -13.65295 -13.42113 -13.20249 -12.98306 -12.93274 -12.70235 -12.55292 -12.16356 -12.04295 -11.87153 -11.74055 -11.44493 -10.78208 -10.35755 -9.43995 -8.95992 -7.81464 -5.26801 -0.44385 0.00044 1.36172 1.47710 1.49367 1.57829 1.88902 2.19854 2.47633 2.52584 2.81818 2.98718 3.23383 3.30061 3.50354 3.60099 3.62976 3.80210 3.87532 3.93629 4.04400 4.16970 4.51584 4.59802 4.63891 4.75980 4.83828 4.89544 4.93698 4.98446 5.12620 5.40369 5.42893 5.54612 5.73402 6.16302 6.26397 7.05967 7.71043 8.33040 9.20708 Molecular weight = 319.09amu Principal moments of inertia in cm(-1) A = 0.029387 B = 0.002830 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.568163 B = 9892.955451 C =10048.824690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.062 4.062 3 Si 0.981 3.019 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.269 1.269 7 C -0.243 4.243 8 H 0.081 0.919 9 N -0.624 5.624 10 C 0.156 3.844 11 C -0.126 4.126 12 C 0.084 3.916 13 H 0.112 0.888 14 O -0.311 6.311 15 C 0.084 3.916 16 C -0.150 4.150 17 C -0.069 4.069 18 C -0.076 4.076 19 C -0.194 4.194 20 C 0.518 3.482 21 F -0.162 7.162 22 F -0.179 7.179 23 F -0.181 7.181 24 C 0.084 3.916 25 F -0.137 7.137 26 C 0.116 3.884 27 H 0.249 0.751 28 H 0.079 0.921 29 H 0.007 0.993 30 H 0.063 0.937 31 H 0.100 0.900 32 H 0.160 0.840 33 H 0.187 0.813 34 H 0.180 0.820 35 H 0.047 0.953 36 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.898 -21.765 4.653 22.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.255 4.255 3 Si 0.809 3.191 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.194 1.194 7 C -0.372 4.372 8 H 0.099 0.901 9 N -0.352 5.352 10 C 0.031 3.969 11 C -0.164 4.164 12 C 0.028 3.972 13 H 0.129 0.871 14 O -0.224 6.224 15 C 0.037 3.963 16 C -0.169 4.169 17 C -0.087 4.087 18 C -0.094 4.094 19 C -0.196 4.196 20 C 0.463 3.537 21 F -0.143 7.143 22 F -0.160 7.160 23 F -0.162 7.162 24 C 0.064 3.936 25 F -0.116 7.116 26 C -0.010 4.010 27 H 0.059 0.941 28 H 0.097 0.903 29 H 0.025 0.975 30 H 0.082 0.918 31 H 0.118 0.882 32 H 0.177 0.823 33 H 0.204 0.796 34 H 0.197 0.803 35 H 0.064 0.936 36 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 4.800 -21.564 4.374 22.521 hybrid contribution 0.178 1.019 -0.706 1.253 sum 4.978 -20.545 3.668 21.455 Atomic orbital electron populations 1.69992 1.06142 1.25306 1.58190 1.25624 0.96676 1.00929 1.02290 0.85040 0.77679 0.78921 0.77433 1.21471 1.21772 1.19370 1.19431 0.91070 0.83494 1.43185 0.90097 1.44719 1.02743 1.00481 1.87211 1.21764 0.84074 0.93570 0.97521 1.23044 0.97039 0.95405 1.00919 1.23593 0.95567 0.83540 0.94515 0.87073 1.86218 1.72308 1.25225 1.38694 1.19154 0.96647 0.87117 0.93348 1.21834 1.00178 1.02524 0.92348 1.21507 0.94892 0.90101 1.02164 1.21270 0.97640 1.00716 0.89784 1.19947 1.08707 0.92844 0.98124 1.17952 0.74276 0.83659 0.77784 1.93187 1.81376 1.66850 1.72908 1.93228 1.44999 1.87799 1.90006 1.93233 1.74115 1.92930 1.55916 1.16762 1.03592 0.93837 0.79446 1.91508 1.89088 1.96599 1.34379 1.21890 0.94766 0.85397 0.98926 0.94074 0.90260 0.97497 0.91785 0.88188 0.82264 0.79558 0.80256 0.93559 0.95974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.81 10.09 21.65 0.22 -54.59 16 2 C -0.06 -3.45 5.49 84.86 0.47 -2.99 16 3 Si 0.98 44.60 29.55 68.60 2.03 46.63 16 4 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 5 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 6 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.24 -13.36 10.28 84.03 0.86 -12.50 16 8 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 9 N -0.62 -31.33 3.40 -691.23 -2.35 -33.68 16 10 C 0.16 7.33 5.89 86.86 0.51 7.85 16 11 C -0.13 -4.59 6.81 31.99 0.22 -4.38 16 12 C 0.08 2.75 2.74 31.78 0.09 2.83 16 13 H 0.11 2.97 6.26 -2.39 -0.01 2.95 16 14 O -0.31 -10.27 9.73 -93.01 -0.91 -11.17 16 15 C 0.08 2.28 6.68 22.53 0.15 2.43 16 16 C -0.15 -2.96 8.90 22.36 0.20 -2.77 16 17 C -0.07 -0.89 10.04 22.26 0.22 -0.67 16 18 C -0.08 -1.08 9.43 22.28 0.21 -0.87 16 19 C -0.19 -4.13 5.37 -19.84 -0.11 -4.24 16 20 C 0.52 11.12 3.03 71.23 0.22 11.33 16 21 F -0.16 -2.83 15.97 44.97 0.72 -2.11 16 22 F -0.18 -4.25 17.05 44.97 0.77 -3.48 16 23 F -0.18 -4.41 17.05 44.97 0.77 -3.65 16 24 C 0.08 2.29 7.14 22.46 0.16 2.45 16 25 F -0.14 -4.38 16.30 44.97 0.73 -3.65 16 26 C 0.12 4.61 6.82 86.67 0.59 5.20 16 27 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 28 H 0.08 4.32 5.87 -2.39 -0.01 4.31 16 29 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 31 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 32 H 0.16 2.90 5.61 -2.91 -0.02 2.88 16 33 H 0.19 0.92 8.06 -2.91 -0.02 0.89 16 34 H 0.18 1.41 7.15 -2.91 -0.02 1.38 16 35 H 0.05 1.68 7.79 -2.39 -0.02 1.66 16 36 H 0.02 0.95 8.06 -2.38 -0.02 0.93 16 Total: -1.00 -66.32 318.43 6.90 -59.41 By element: Atomic # 1 Polarization: 1.46 SS G_CDS: 1.14 Total: 2.60 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: 3.79 Total: 3.69 kcal Atomic # 7 Polarization: -86.14 SS G_CDS: -2.13 Total: -88.27 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: -0.91 Total: -11.17 kcal Atomic # 9 Polarization: -15.87 SS G_CDS: 2.98 Total: -12.89 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -66.32 6.90 -59.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225924270.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.610 kcal (2) G-P(sol) polarization free energy of solvation -66.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds