Wall clock time and date at job start Tue Mar 31 2020 12:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99385 * 2 1 4 4 H 1.48507 * 109.47191 * 90.00299 * 3 2 1 5 5 H 1.48501 * 109.46878 * 209.99877 * 3 2 1 6 6 H 1.48493 * 109.47720 * 329.99899 * 3 2 1 7 7 C 1.38804 * 120.00467 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00436 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99747 * 359.97438 * 7 2 1 10 10 C 1.47024 * 125.65031 * 359.69581 * 9 7 2 11 11 C 1.54328 * 107.26587 * 178.84542 * 10 9 7 12 12 C 1.55160 * 103.02294 * 338.14247 * 11 10 9 13 13 H 1.08995 * 111.00104 * 277.23422 * 12 11 10 14 14 O 1.42902 * 111.00642 * 153.38080 * 12 11 10 15 15 C 1.35946 * 116.99926 * 162.32741 * 14 12 11 16 16 C 1.38662 * 120.06674 * 5.31152 * 15 14 12 17 17 C 1.38182 * 119.97274 * 179.71726 * 16 15 14 18 18 C 1.38261 * 120.09170 * 0.55821 * 17 16 15 19 19 C 1.38261 * 120.12741 * 359.71250 * 18 17 16 20 20 C 1.50702 * 119.98307 * 179.97438 * 19 18 17 21 21 F 1.39895 * 109.47302 * 0.02997 * 20 19 18 22 22 F 1.39902 * 109.46887 * 120.02766 * 20 19 18 23 23 F 1.39896 * 109.47117 * 240.02527 * 20 19 18 24 24 C 1.38330 * 120.02893 * 0.02562 * 19 18 17 25 25 F 1.35103 * 120.04478 * 180.02562 * 24 19 18 26 26 C 1.47424 * 125.64477 * 180.02562 * 9 7 2 27 27 H 0.96996 * 120.00372 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.87801 * 298.39438 * 10 9 7 29 29 H 1.08998 * 109.87845 * 59.55422 * 10 9 7 30 30 H 1.08994 * 110.85479 * 219.67054 * 11 10 9 31 31 H 1.09001 * 110.66758 * 96.52081 * 11 10 9 32 32 H 1.07997 * 120.01437 * 359.97438 * 16 15 14 33 33 H 1.07993 * 119.95220 * 180.27819 * 17 16 15 34 34 H 1.08002 * 119.93844 * 179.74521 * 18 17 16 35 35 H 1.08993 * 110.36932 * 322.93112 * 26 9 7 36 36 H 1.08996 * 110.36930 * 85.25802 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 2.4976 2.0466 1.4001 5 1 3.5476 1.4404 -0.7000 6 1 1.4475 2.6528 -0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0902 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1374 -2.5328 0.0063 11 6 -0.4483 -4.0441 -0.0262 12 6 0.8516 -4.6559 -0.6122 13 1 0.8555 -4.5957 -1.7005 14 8 1.0249 -6.0054 -0.1752 15 6 1.8937 -6.7762 -0.8818 16 6 2.6470 -6.2166 -1.9027 17 6 3.5338 -7.0005 -2.6157 18 6 3.6629 -8.3450 -2.3204 19 6 2.9097 -8.9083 -1.3070 20 6 3.0526 -10.3743 -0.9883 21 9 3.9990 -10.9476 -1.8443 22 9 3.4720 -10.5244 0.3380 23 9 1.8195 -11.0117 -1.1624 24 6 2.0243 -8.1272 -0.5863 25 9 1.2886 -8.6772 0.4043 26 6 1.9336 -3.7310 -0.0005 27 1 -0.4850 0.8400 -0.0004 28 1 -0.5498 -2.0868 0.9114 29 1 -0.5618 -2.0499 -0.8739 30 1 -1.2989 -4.2514 -0.6754 31 1 -0.6322 -4.4208 0.9800 32 1 2.5436 -5.1675 -2.1376 33 1 4.1235 -6.5633 -3.4078 34 1 4.3538 -8.9563 -2.8820 35 1 2.8328 -3.7404 -0.6164 36 1 2.1671 -4.0418 1.0178 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225924271.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:35 Heat of formation + Delta-G solvation = -188.643248 kcal Electronic energy + Delta-G solvation = -26821.514554 eV Core-core repulsion = 22192.119936 eV Total energy + Delta-G solvation = -4629.394618 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.094 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -51.33138 -50.12214 -48.76003 -48.75777 -41.45083 -39.43861 -37.86863 -34.34558 -32.91201 -31.62048 -30.77991 -29.21096 -27.23863 -26.51848 -23.95433 -23.69435 -22.15878 -21.75172 -20.11689 -19.64829 -19.63322 -19.09760 -18.34405 -18.26486 -17.62409 -17.17302 -16.76887 -16.31095 -15.93441 -15.79546 -15.61187 -15.50792 -15.48508 -15.17225 -14.90338 -14.89625 -14.88130 -14.40870 -14.15991 -13.92501 -13.87340 -13.49859 -13.15221 -12.97569 -12.91951 -12.70411 -12.42784 -12.16917 -12.04190 -11.92315 -11.67192 -11.55831 -10.73898 -10.35121 -9.43902 -8.97705 -7.88070 -5.25731 -0.43955 0.00279 1.36214 1.48317 1.49809 1.58403 1.87084 2.20254 2.48331 2.53217 2.81636 2.98955 3.24211 3.31450 3.49457 3.61761 3.64012 3.81540 3.86818 3.95368 4.03433 4.15877 4.47987 4.57631 4.64718 4.75062 4.79722 4.90857 4.94854 4.99020 5.13974 5.40164 5.42109 5.56109 5.69205 6.10061 6.19254 7.05113 7.70162 8.33215 9.22317 Molecular weight = 319.09amu Principal moments of inertia in cm(-1) A = 0.029649 B = 0.002899 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.141053 B = 9656.233982 C =10142.107154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.061 4.061 3 Si 0.980 3.020 4 H -0.289 1.289 5 H -0.265 1.265 6 H -0.294 1.294 7 C -0.246 4.246 8 H 0.087 0.913 9 N -0.622 5.622 10 C 0.186 3.814 11 C -0.124 4.124 12 C 0.082 3.918 13 H 0.104 0.896 14 O -0.308 6.308 15 C 0.086 3.914 16 C -0.150 4.150 17 C -0.070 4.070 18 C -0.075 4.075 19 C -0.194 4.194 20 C 0.518 3.482 21 F -0.162 7.162 22 F -0.180 7.180 23 F -0.179 7.179 24 C 0.086 3.914 25 F -0.136 7.136 26 C 0.116 3.884 27 H 0.249 0.751 28 H 0.013 0.987 29 H 0.028 0.972 30 H 0.096 0.904 31 H 0.072 0.928 32 H 0.156 0.844 33 H 0.185 0.815 34 H 0.180 0.820 35 H 0.062 0.938 36 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.439 -19.446 -7.839 22.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.255 4.255 3 Si 0.808 3.192 4 H -0.216 1.216 5 H -0.189 1.189 6 H -0.220 1.220 7 C -0.375 4.375 8 H 0.105 0.895 9 N -0.350 5.350 10 C 0.061 3.939 11 C -0.162 4.162 12 C 0.025 3.975 13 H 0.122 0.878 14 O -0.222 6.222 15 C 0.039 3.961 16 C -0.169 4.169 17 C -0.088 4.088 18 C -0.093 4.093 19 C -0.196 4.196 20 C 0.464 3.536 21 F -0.144 7.144 22 F -0.161 7.161 23 F -0.160 7.160 24 C 0.066 3.934 25 F -0.114 7.114 26 C -0.010 4.010 27 H 0.058 0.942 28 H 0.031 0.969 29 H 0.046 0.954 30 H 0.115 0.885 31 H 0.091 0.909 32 H 0.174 0.826 33 H 0.202 0.798 34 H 0.197 0.803 35 H 0.081 0.919 36 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 7.246 -19.352 -7.619 22.024 hybrid contribution -0.164 0.880 0.738 1.160 sum 7.082 -18.472 -6.880 20.946 Atomic orbital electron populations 1.70143 1.06322 1.25562 1.57800 1.25662 0.96621 1.01055 1.02146 0.85058 0.77822 0.78930 0.77371 1.21625 1.18945 1.22013 1.19456 0.91154 0.83220 1.43665 0.89534 1.44616 1.02384 1.00699 1.87321 1.20948 0.83921 0.90116 0.98869 1.22863 0.96085 0.95215 1.02058 1.23682 0.97116 0.77088 0.99568 0.87844 1.86156 1.58447 1.24033 1.53517 1.19094 0.93506 0.89146 0.94343 1.21840 0.97073 1.02715 0.95270 1.21489 0.96136 0.92132 0.99053 1.21259 0.97482 0.96354 0.94239 1.19943 1.04056 0.92020 1.03617 1.17937 0.74044 0.87181 0.74456 1.93187 1.64830 1.86287 1.70052 1.93232 1.90135 1.96450 1.36311 1.93228 1.43681 1.84053 1.95054 1.16715 0.96252 0.89431 0.90990 1.91512 1.75375 1.85442 1.59094 1.22097 0.95553 0.85208 0.98129 0.94186 0.96861 0.95368 0.88520 0.90882 0.82625 0.79795 0.80273 0.91949 0.96206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.26 10.31 21.65 0.22 -55.04 16 2 C -0.06 -3.38 5.49 84.86 0.47 -2.91 16 3 Si 0.98 44.06 29.55 68.60 2.03 46.08 16 4 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 5 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 6 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 7 C -0.25 -13.25 10.28 84.03 0.86 -12.39 16 8 H 0.09 4.40 7.83 -2.91 -0.02 4.38 16 9 N -0.62 -30.73 3.39 -691.95 -2.35 -33.07 16 10 C 0.19 8.86 5.38 86.73 0.47 9.33 16 11 C -0.12 -4.47 6.68 31.79 0.21 -4.25 16 12 C 0.08 2.70 2.82 32.00 0.09 2.79 16 13 H 0.10 3.00 6.62 -2.39 -0.02 2.98 16 14 O -0.31 -9.92 9.82 -92.94 -0.91 -10.84 16 15 C 0.09 2.32 6.64 22.53 0.15 2.47 16 16 C -0.15 -3.10 8.72 22.36 0.20 -2.91 16 17 C -0.07 -0.97 10.04 22.26 0.22 -0.75 16 18 C -0.08 -1.09 9.43 22.28 0.21 -0.88 16 19 C -0.19 -4.11 5.37 -19.84 -0.11 -4.22 16 20 C 0.52 10.99 3.03 71.24 0.22 11.21 16 21 F -0.16 -2.82 15.97 44.97 0.72 -2.11 16 22 F -0.18 -4.31 17.05 44.97 0.77 -3.54 16 23 F -0.18 -4.19 17.05 44.97 0.77 -3.42 16 24 C 0.09 2.32 7.14 22.45 0.16 2.48 16 25 F -0.14 -4.21 16.30 44.97 0.73 -3.47 16 26 C 0.12 4.52 6.60 86.86 0.57 5.09 16 27 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 28 H 0.01 0.71 7.52 -2.39 -0.02 0.70 16 29 H 0.03 1.46 7.37 -2.39 -0.02 1.44 16 30 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 31 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.16 3.16 5.31 -2.91 -0.02 3.15 16 33 H 0.18 1.15 8.06 -2.91 -0.02 1.13 16 34 H 0.18 1.47 7.15 -2.91 -0.02 1.45 16 35 H 0.06 2.19 7.25 -2.39 -0.02 2.17 16 36 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -65.35 318.23 6.83 -58.52 By element: Atomic # 1 Polarization: 0.70 SS G_CDS: 1.14 Total: 1.84 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: 3.72 Total: 5.05 kcal Atomic # 7 Polarization: -85.99 SS G_CDS: -2.13 Total: -88.11 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: -0.91 Total: -10.84 kcal Atomic # 9 Polarization: -15.53 SS G_CDS: 2.98 Total: -12.54 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -65.35 6.83 -58.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225924271.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.126 kcal (2) G-P(sol) polarization free energy of solvation -65.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds