Wall clock time and date at job start Tue Mar 31 2020 12:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99669 * 2 1 4 4 H 1.48494 * 109.47383 * 89.99926 * 3 2 1 5 5 H 1.48502 * 109.47117 * 210.00311 * 3 2 1 6 6 H 1.48503 * 109.47201 * 329.99757 * 3 2 1 7 7 C 1.37873 * 120.00310 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00244 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99879 * 359.97438 * 7 2 1 10 10 N 1.46905 * 109.47333 * 180.02562 * 9 7 2 11 11 C 1.47477 * 110.99925 * 265.97052 * 10 9 7 12 12 C 1.53503 * 87.93243 * 221.29456 * 11 10 9 13 13 O 1.42900 * 114.34440 * 272.36655 * 12 11 10 14 14 C 1.35957 * 116.99816 * 250.66082 * 13 12 11 15 15 C 1.38718 * 120.02967 * 5.81032 * 14 13 12 16 16 C 1.38135 * 119.97033 * 179.97438 * 15 14 13 17 17 C 1.38475 * 120.02472 * 0.02562 * 16 15 14 18 18 F 1.35107 * 119.96407 * 179.97438 * 17 16 15 19 19 C 1.38427 * 120.06511 * 359.97438 * 17 16 15 20 20 C 1.38175 * 120.02812 * 359.74176 * 19 17 16 21 21 C 1.50703 * 120.01547 * 180.25618 * 20 19 17 22 22 F 1.39898 * 109.47244 * 0.27546 * 21 20 19 23 23 F 1.39894 * 109.46953 * 120.27640 * 21 20 19 24 24 F 1.39901 * 109.47029 * 240.27793 * 21 20 19 25 25 C 1.47470 * 111.00205 * 170.00047 * 10 9 7 26 26 H 0.96995 * 120.00648 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47247 * 300.00013 * 9 7 2 28 28 H 1.09001 * 109.47241 * 59.99779 * 9 7 2 29 29 H 1.08997 * 113.47743 * 336.06358 * 11 10 9 30 30 H 1.09000 * 113.47626 * 106.52496 * 11 10 9 31 31 H 1.09002 * 114.17249 * 139.67115 * 12 11 10 32 32 H 1.08004 * 120.01699 * 359.97438 * 15 14 13 33 33 H 1.07998 * 119.98612 * 180.02562 * 16 15 14 34 34 H 1.08006 * 119.98637 * 179.97438 * 19 17 16 35 35 H 1.08999 * 113.47934 * 253.47199 * 25 10 9 36 36 H 1.09001 * 113.48012 * 23.87150 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 1.4000 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2058 -3.6157 -0.0005 11 6 2.4757 -4.0803 -1.3740 12 6 2.4192 -5.5180 -0.8392 13 8 3.6661 -6.0126 -0.3464 14 6 4.2840 -6.9730 -1.0841 15 6 3.7651 -7.3434 -2.3161 16 6 4.3943 -8.3190 -3.0648 17 6 5.5422 -8.9275 -2.5856 18 9 6.1563 -9.8819 -3.3187 19 6 6.0611 -8.5589 -1.3563 20 6 5.4370 -7.5791 -0.6081 21 6 6.0054 -7.1740 0.7275 22 9 7.1602 -7.9193 0.9884 23 9 6.3247 -5.8121 0.7047 24 9 5.0590 -7.4144 1.7294 25 6 1.5187 -4.8985 0.2385 26 1 -0.4851 0.8399 -0.0004 27 1 0.6248 -2.5571 0.8897 28 1 0.6241 -2.5567 -0.8903 29 1 1.6758 -3.8465 -2.0765 30 1 3.4598 -3.7929 -1.7440 31 1 1.9082 -6.2197 -1.4985 32 1 2.8696 -6.8692 -2.6898 33 1 3.9908 -8.6072 -4.0241 34 1 6.9562 -9.0346 -0.9837 35 1 1.6917 -5.3047 1.2351 36 1 0.4631 -4.8829 -0.0326 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227713296.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:48 Heat of formation + Delta-G solvation = -156.621686 kcal Electronic energy + Delta-G solvation = -26793.435093 eV Core-core repulsion = 22165.429034 eV Total energy + Delta-G solvation = -4628.006059 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.094 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.10286 -49.16984 -47.66982 -47.48748 -40.84490 -39.15774 -36.83884 -32.94597 -32.49783 -30.19336 -29.19969 -26.28110 -25.78228 -25.43061 -23.46754 -22.42377 -21.63563 -19.89296 -19.12219 -18.52250 -18.41355 -17.78137 -16.73429 -16.51221 -16.40818 -16.00638 -15.66053 -15.25502 -15.16365 -14.66274 -14.39741 -14.31781 -13.99809 -13.96411 -13.82465 -13.68187 -13.64008 -13.56650 -13.36432 -12.80413 -12.58428 -12.43839 -12.03636 -11.81809 -11.62817 -11.07076 -11.00164 -10.56764 -10.44496 -10.22175 -9.83911 -9.74858 -9.32823 -8.50368 -8.46930 -7.95697 -6.07951 -4.09066 0.42129 0.74665 2.55170 2.77843 2.93268 3.30905 3.36665 3.41410 3.57001 3.80674 4.02402 4.36952 4.38276 4.41452 4.44733 4.53205 4.58439 4.65128 4.90899 5.01338 5.15105 5.27591 5.47458 5.57222 5.62546 5.69560 5.75692 5.92567 6.02453 6.13315 6.27056 6.50035 7.02936 7.12066 7.57291 7.78761 8.02629 8.38652 8.98889 9.55583 11.03125 Molecular weight = 319.09amu Principal moments of inertia in cm(-1) A = 0.018046 B = 0.003261 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.237303 B = 8583.750324 C = 9211.951785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.054 3.946 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.273 1.273 6 H -0.287 1.287 7 C -0.505 4.505 8 H 0.064 0.936 9 C 0.156 3.844 10 N -0.455 5.455 11 C -0.004 4.004 12 C 0.038 3.962 13 O -0.262 6.262 14 C 0.183 3.817 15 C -0.185 4.185 16 C -0.077 4.077 17 C 0.050 3.950 18 F -0.136 7.136 19 C -0.068 4.068 20 C -0.199 4.199 21 C 0.520 3.480 22 F -0.182 7.182 23 F -0.164 7.164 24 F -0.170 7.170 25 C 0.002 3.998 26 H 0.262 0.738 27 H 0.031 0.969 28 H 0.005 0.995 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.154 0.846 33 H 0.147 0.853 34 H 0.155 0.845 35 H 0.087 0.913 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.314 -20.231 -5.457 22.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.147 4.147 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.198 1.198 6 H -0.213 1.213 7 C -0.543 4.543 8 H 0.082 0.918 9 C 0.030 3.970 10 N -0.178 5.178 11 C -0.134 4.134 12 C -0.018 4.018 13 O -0.173 6.173 14 C 0.135 3.865 15 C -0.204 4.204 16 C -0.096 4.096 17 C 0.031 3.969 18 F -0.114 7.114 19 C -0.087 4.087 20 C -0.202 4.202 21 C 0.466 3.534 22 F -0.163 7.163 23 F -0.146 7.146 24 F -0.151 7.151 25 C -0.127 4.127 26 H 0.071 0.929 27 H 0.049 0.951 28 H 0.022 0.978 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.109 0.891 32 H 0.172 0.828 33 H 0.165 0.835 34 H 0.173 0.827 35 H 0.106 0.894 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 8.772 -19.746 -4.797 22.133 hybrid contribution -0.310 0.730 -0.595 0.991 sum 8.462 -19.016 -5.392 21.501 Atomic orbital electron populations 1.69945 1.06075 1.26900 1.51148 1.24999 0.94896 0.99437 0.95335 0.86465 0.79724 0.82831 0.78235 1.20547 1.19782 1.21289 1.21089 0.93686 0.89652 1.49913 0.91764 1.20315 0.90645 0.89246 0.96777 1.69141 1.33420 1.01416 1.13793 1.24263 1.03186 0.91193 0.94749 1.23913 0.83177 0.95728 0.98978 1.86303 1.35130 1.49145 1.46730 1.18718 0.90440 0.87179 0.90163 1.21224 1.03429 1.01382 0.94357 1.21176 0.93296 0.94625 1.00458 1.17261 0.95185 0.92870 0.91580 1.91522 1.82243 1.61422 1.76251 1.20744 1.00051 0.95218 0.92692 1.19085 0.99505 1.04445 0.97116 1.17824 0.75462 0.75348 0.84792 1.93146 1.51381 1.76912 1.94908 1.93283 1.92732 1.31861 1.96675 1.93239 1.64477 1.94063 1.63318 1.24011 0.96180 0.93143 0.99385 0.92876 0.95077 0.97756 0.90196 0.89728 0.89097 0.82819 0.83514 0.82728 0.89413 0.90057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.46 13.29 55.43 0.74 -25.72 16 2 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.50 -14.29 9.39 -34.44 -0.32 -14.61 16 8 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 9 C 0.16 3.95 4.57 -4.97 -0.02 3.93 16 10 N -0.45 -9.63 6.32 -246.18 -1.55 -11.18 16 11 C 0.00 -0.08 7.56 -7.57 -0.06 -0.13 16 12 C 0.04 0.53 4.06 -26.21 -0.11 0.43 16 13 O -0.26 -3.93 9.10 -19.61 -0.18 -4.11 16 14 C 0.18 2.27 6.56 -39.24 -0.26 2.01 16 15 C -0.19 -1.77 9.02 -39.44 -0.36 -2.13 16 16 C -0.08 -0.64 10.02 -39.53 -0.40 -1.04 16 17 C 0.05 0.48 7.30 -39.42 -0.29 0.19 16 18 F -0.14 -1.32 17.27 2.25 0.04 -1.28 16 19 C -0.07 -0.68 9.41 -39.54 -0.37 -1.05 16 20 C -0.20 -2.39 5.38 -104.48 -0.56 -2.95 16 21 C 0.52 6.92 2.99 36.01 0.11 7.03 16 22 F -0.18 -2.16 15.97 2.25 0.04 -2.12 16 23 F -0.16 -2.55 16.95 2.25 0.04 -2.51 16 24 F -0.17 -2.44 16.95 2.25 0.04 -2.40 16 25 C 0.00 0.03 7.52 -7.57 -0.06 -0.02 16 26 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 27 H 0.03 0.84 8.08 -51.93 -0.42 0.42 16 28 H 0.00 0.12 7.30 -51.93 -0.38 -0.26 16 29 H 0.08 1.30 7.42 -51.93 -0.39 0.92 16 30 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 31 H 0.09 0.92 5.90 -51.93 -0.31 0.62 16 32 H 0.15 1.19 5.89 -52.48 -0.31 0.88 16 33 H 0.15 0.84 8.06 -52.49 -0.42 0.41 16 34 H 0.16 1.27 7.16 -52.48 -0.38 0.89 16 35 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 36 H 0.08 1.22 7.91 -51.93 -0.41 0.81 16 LS Contribution 326.04 15.07 4.91 4.91 Total: -1.00 -31.16 326.04 -7.14 -38.30 By element: Atomic # 1 Polarization: -0.32 SS G_CDS: -3.40 Total: -3.71 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -2.79 Total: -6.90 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: -0.82 Total: -36.90 kcal Atomic # 8 Polarization: -3.93 SS G_CDS: -0.18 Total: -4.11 kcal Atomic # 9 Polarization: -8.47 SS G_CDS: 0.15 Total: -8.32 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.16 -7.14 -38.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227713296.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.325 kcal (2) G-P(sol) polarization free energy of solvation -31.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds