Wall clock time and date at job start Tue Mar 31 2020 12:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35998 * 116.99759 * 2 1 4 4 C 1.38672 * 119.93233 * 0.22810 * 3 2 1 5 5 C 1.37976 * 120.14332 * 180.23336 * 4 3 2 6 6 C 1.50700 * 119.99545 * 179.77114 * 5 4 3 7 7 C 1.50696 * 109.46954 * 265.02007 * 6 5 4 8 8 H 1.07996 * 119.99966 * 0.02562 * 7 6 5 9 9 C 1.37877 * 119.99889 * 180.02562 * 7 6 5 10 10 N 1.31524 * 120.00104 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00203 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.46973 * 89.99733 * 11 9 7 13 13 H 1.48499 * 109.47258 * 209.99747 * 11 9 7 14 14 H 1.48493 * 109.47010 * 330.00154 * 11 9 7 15 15 C 1.39545 * 120.00590 * 359.79044 * 5 4 3 16 16 C 1.47885 * 120.07158 * 179.97438 * 15 5 4 17 17 C 1.35027 * 126.10656 * 130.02091 * 16 15 5 18 18 N 1.31489 * 114.22316 * 179.97438 * 17 16 15 19 19 C 1.29096 * 117.28438 * 0.02562 * 18 17 16 20 20 C 1.50697 * 124.81862 * 179.97438 * 19 18 17 21 21 S 1.70957 * 110.36893 * 359.75786 * 19 18 17 22 22 C 1.39548 * 119.86032 * 359.97438 * 15 5 4 23 23 C 1.38310 * 119.85523 * 0.02562 * 22 15 5 24 24 O 1.35991 * 119.99794 * 179.97438 * 23 22 15 25 25 C 1.42903 * 117.00364 * 359.97438 * 24 23 22 26 26 H 1.08999 * 109.46630 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47059 * 299.99931 * 1 2 3 28 28 H 1.08993 * 109.46934 * 60.00470 * 1 2 3 29 29 H 1.07999 * 119.92294 * 359.97438 * 4 3 2 30 30 H 1.08997 * 109.47186 * 25.02168 * 6 5 4 31 31 H 1.09006 * 109.46584 * 145.02204 * 6 5 4 32 32 H 0.96997 * 119.99465 * 180.02562 * 10 9 7 33 33 H 1.08001 * 122.88807 * 359.96845 * 17 16 15 34 34 H 1.09001 * 109.46854 * 90.02060 * 20 19 18 35 35 H 1.08999 * 109.47501 * 210.02325 * 20 19 18 36 36 H 1.09001 * 109.47176 * 330.02871 * 20 19 18 37 37 H 1.07999 * 120.06940 * 179.97438 * 22 15 5 38 38 H 1.09002 * 109.47382 * 179.97438 * 25 24 23 39 39 H 1.09001 * 109.46938 * 59.99845 * 25 24 23 40 40 H 1.09004 * 109.46926 * 299.99967 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2897 2.3738 0.0048 5 6 1.9115 3.6055 -0.0001 6 6 1.0859 4.8663 0.0000 7 6 0.9091 5.3509 -1.4160 8 1 1.3501 4.8008 -2.2340 9 6 0.1844 6.4967 -1.6670 10 7 -0.3531 7.1664 -0.6708 11 14 -0.0355 7.0971 -3.4222 12 1 -1.2614 6.4923 -4.0024 13 1 -0.1635 8.5766 -3.4269 14 1 1.1437 6.6996 -4.2326 15 6 3.3047 3.6839 -0.0054 16 6 3.9727 5.0033 -0.0111 17 6 4.9610 5.3985 0.8197 18 7 5.3864 6.6244 0.6074 19 6 4.8237 7.2894 -0.3454 20 6 5.1768 8.7019 -0.7339 21 16 3.6251 6.3381 -1.1077 22 6 4.0664 2.5146 -0.0052 23 6 3.4371 1.2830 -0.0004 24 8 4.1765 0.1417 -0.0007 25 6 5.5979 0.2894 -0.0069 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 0.2113 2.3146 0.0081 30 1 0.1093 4.6611 0.4384 31 1 1.5934 5.6328 0.5857 32 1 -0.8632 7.9722 -0.8475 33 1 5.3671 4.7623 1.5922 34 1 5.9613 8.6853 -1.4904 35 1 4.2944 9.1995 -1.1363 36 1 5.5302 9.2427 0.1441 37 1 5.1449 2.5714 -0.0097 38 1 6.0656 -0.6952 -0.0060 39 1 5.9097 0.8401 0.8806 40 1 5.9025 0.8360 -0.8994 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243378639.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:48 Heat of formation + Delta-G solvation = -14.341924 kcal Electronic energy + Delta-G solvation = -24498.731093 eV Core-core repulsion = 20984.964664 eV Total energy + Delta-G solvation = -3513.766429 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.22372 -38.85827 -38.13890 -36.93683 -33.37687 -32.12039 -30.98276 -30.07106 -28.07692 -27.30048 -26.99786 -25.67784 -23.48033 -23.11440 -21.67810 -20.55654 -18.89116 -17.95645 -17.27259 -16.56059 -16.38199 -16.19476 -15.76595 -15.00984 -14.82472 -14.70955 -14.26985 -14.15789 -14.00038 -13.35541 -13.09037 -12.86179 -12.63655 -12.29483 -12.21874 -12.05989 -11.93610 -11.72779 -11.45076 -11.26230 -11.03132 -10.95552 -10.88496 -10.66068 -10.55971 -10.22685 -9.77381 -9.52370 -8.92293 -8.58225 -8.53460 -8.07469 -7.95954 -7.10370 -6.23643 -4.24501 1.12127 1.80781 1.94876 2.31824 2.71133 3.17974 3.25556 3.28337 3.47262 3.54598 3.56670 4.17501 4.33198 4.79835 5.07985 5.13905 5.20149 5.28046 5.31013 5.32939 5.40413 5.55503 5.58335 5.61639 5.69206 5.77691 5.78332 5.81496 5.84162 6.09542 6.16604 6.22176 6.53123 6.77319 6.85497 6.94721 7.09992 7.32260 7.39330 7.63555 7.71171 7.90555 8.09067 8.44188 8.75783 9.33213 10.83813 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.010742 B = 0.005991 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2606.026171 B = 4672.214628 C = 6675.334529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.312 6.312 3 C 0.103 3.897 4 C -0.172 4.172 5 C -0.017 4.017 6 C 0.044 3.956 7 C -0.498 4.498 8 H 0.061 0.939 9 C 0.073 3.927 10 N -0.876 5.876 11 Si 0.880 3.120 12 H -0.277 1.277 13 H -0.282 1.282 14 H -0.267 1.267 15 C -0.024 4.024 16 C -0.183 4.183 17 C 0.025 3.975 18 N -0.490 5.490 19 C -0.042 4.042 20 C -0.070 4.070 21 S 0.272 5.728 22 C -0.149 4.149 23 C 0.072 3.928 24 O -0.312 6.312 25 C 0.029 3.971 26 H 0.094 0.906 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.136 0.864 30 H 0.031 0.969 31 H 0.035 0.965 32 H 0.266 0.734 33 H 0.161 0.839 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.130 0.870 38 H 0.094 0.906 39 H 0.051 0.949 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.009 -7.103 0.037 9.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.226 6.226 3 C 0.057 3.943 4 C -0.191 4.191 5 C -0.019 4.019 6 C 0.007 3.993 7 C -0.540 4.540 8 H 0.079 0.921 9 C -0.132 4.132 10 N -0.513 5.513 11 Si 0.706 3.294 12 H -0.203 1.203 13 H -0.207 1.207 14 H -0.191 1.191 15 C -0.027 4.027 16 C -0.306 4.306 17 C -0.130 4.130 18 N -0.206 5.206 19 C -0.315 4.315 20 C -0.130 4.130 21 S 0.538 5.462 22 C -0.170 4.170 23 C 0.027 3.973 24 O -0.226 6.226 25 C -0.067 4.067 26 H 0.112 0.888 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.154 0.846 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.179 0.821 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.148 0.852 38 H 0.112 0.888 39 H 0.070 0.930 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.739 -6.727 -0.491 9.534 hybrid contribution 0.032 0.097 -0.082 0.131 sum 6.771 -6.630 -0.573 9.494 Atomic orbital electron populations 1.23019 0.78933 1.03233 1.01658 1.86095 1.20778 1.26422 1.89294 1.18325 0.88917 0.84974 1.02060 1.20925 0.99981 0.90518 1.07694 1.20533 0.92507 0.96649 0.92179 1.18462 0.94314 0.88514 0.98001 1.20985 1.32473 1.08873 0.91710 0.92092 1.24942 0.94983 0.96301 0.96986 1.69949 1.33264 1.17147 1.30903 0.86748 0.79277 0.78353 0.84987 1.20254 1.20714 1.19114 1.17430 0.91983 0.88849 1.04405 1.24309 1.03409 0.99288 1.03566 1.21679 0.97431 0.92400 1.01474 1.66110 1.28790 1.06837 1.18824 1.27591 0.99878 1.03295 1.00732 1.20254 1.01914 0.88840 1.01945 1.85560 1.26790 1.03211 1.30661 1.20946 0.99527 0.90161 1.06398 1.17848 0.87994 0.85477 1.05944 1.86115 1.18090 1.28407 1.89987 1.22966 0.79479 1.03133 1.01104 0.88777 0.92740 0.92518 0.84613 0.95026 0.94708 0.92441 0.82137 0.90747 0.90648 0.90568 0.85184 0.88787 0.93015 0.93024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.33 16 2 O -0.31 -5.23 10.27 -34.42 -0.35 -5.59 16 3 C 0.10 1.88 6.70 -39.04 -0.26 1.61 16 4 C -0.17 -3.28 8.65 -39.52 -0.34 -3.62 16 5 C -0.02 -0.35 5.10 -104.23 -0.53 -0.89 16 6 C 0.04 1.06 4.38 -29.04 -0.13 0.93 16 7 C -0.50 -12.41 6.27 -34.44 -0.22 -12.63 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 10 N -0.88 -23.55 13.29 55.43 0.74 -22.82 16 11 Si 0.88 19.61 29.54 -169.99 -5.02 14.59 16 12 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 13 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 14 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 15 C -0.02 -0.47 5.79 -104.97 -0.61 -1.08 16 16 C -0.18 -3.65 5.03 -36.78 -0.18 -3.84 16 17 C 0.03 0.48 11.20 -18.84 -0.21 0.27 16 18 N -0.49 -9.53 10.52 -11.60 -0.12 -9.66 16 19 C -0.04 -0.78 7.38 -13.43 -0.10 -0.88 16 20 C -0.07 -1.01 10.46 36.00 0.38 -0.63 16 21 S 0.27 5.52 19.18 -107.50 -2.06 3.46 16 22 C -0.15 -2.58 8.68 -39.07 -0.34 -2.92 16 23 C 0.07 1.27 6.69 -39.18 -0.26 1.01 16 24 O -0.31 -5.03 10.27 -34.40 -0.35 -5.39 16 25 C 0.03 0.33 9.81 101.05 0.99 1.32 16 26 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.05 0.64 7.65 -51.93 -0.40 0.25 16 28 H 0.06 0.70 7.66 -51.93 -0.40 0.30 16 29 H 0.14 2.39 6.27 -52.49 -0.33 2.07 16 30 H 0.03 0.79 8.05 -51.93 -0.42 0.38 16 31 H 0.03 0.90 6.79 -51.93 -0.35 0.55 16 32 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 33 H 0.16 2.62 8.06 -52.49 -0.42 2.20 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.13 1.93 6.29 -52.49 -0.33 1.60 16 38 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 40 H 0.05 0.55 7.66 -51.93 -0.40 0.16 16 LS Contribution 348.65 15.07 5.25 5.25 Total: -1.00 -29.65 348.65 -7.94 -37.59 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -5.10 Total: 0.82 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: -0.92 Total: -18.27 kcal Atomic # 7 Polarization: -33.09 SS G_CDS: 0.61 Total: -32.47 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: -0.71 Total: -10.97 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.59 kcal Atomic # 16 Polarization: 5.52 SS G_CDS: -2.06 Total: 3.46 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.65 -7.94 -37.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243378639.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.250 kcal (2) G-P(sol) polarization free energy of solvation -29.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds