Wall clock time and date at job start Tue Mar 31 2020 12:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35998 * 116.99759 * 2 1 4 4 C 1.38672 * 119.93233 * 0.22810 * 3 2 1 5 5 C 1.37976 * 120.14332 * 180.23336 * 4 3 2 6 6 C 1.50700 * 119.99545 * 179.77114 * 5 4 3 7 7 C 1.50696 * 109.46954 * 265.02007 * 6 5 4 8 8 H 1.07996 * 119.99966 * 0.02562 * 7 6 5 9 9 C 1.37877 * 119.99889 * 180.02562 * 7 6 5 10 10 N 1.31524 * 120.00104 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00203 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.46973 * 89.99733 * 11 9 7 13 13 H 1.48499 * 109.47258 * 209.99747 * 11 9 7 14 14 H 1.48493 * 109.47010 * 330.00154 * 11 9 7 15 15 C 1.39545 * 120.00590 * 359.79044 * 5 4 3 16 16 C 1.47885 * 120.07158 * 179.97438 * 15 5 4 17 17 C 1.35027 * 126.10656 * 130.02091 * 16 15 5 18 18 N 1.31489 * 114.22316 * 179.97438 * 17 16 15 19 19 C 1.29096 * 117.28438 * 0.02562 * 18 17 16 20 20 C 1.50697 * 124.81862 * 179.97438 * 19 18 17 21 21 S 1.70957 * 110.36893 * 359.75786 * 19 18 17 22 22 C 1.39548 * 119.86032 * 359.97438 * 15 5 4 23 23 C 1.38310 * 119.85523 * 0.02562 * 22 15 5 24 24 O 1.35991 * 119.99794 * 179.97438 * 23 22 15 25 25 C 1.42903 * 117.00364 * 359.97438 * 24 23 22 26 26 H 1.08999 * 109.46630 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47059 * 299.99931 * 1 2 3 28 28 H 1.08993 * 109.46934 * 60.00470 * 1 2 3 29 29 H 1.07999 * 119.92294 * 359.97438 * 4 3 2 30 30 H 1.08997 * 109.47186 * 25.02168 * 6 5 4 31 31 H 1.09006 * 109.46584 * 145.02204 * 6 5 4 32 32 H 0.96997 * 119.99465 * 180.02562 * 10 9 7 33 33 H 1.08001 * 122.88807 * 359.96845 * 17 16 15 34 34 H 1.09001 * 109.46854 * 90.02060 * 20 19 18 35 35 H 1.08999 * 109.47501 * 210.02325 * 20 19 18 36 36 H 1.09001 * 109.47176 * 330.02871 * 20 19 18 37 37 H 1.07999 * 120.06940 * 179.97438 * 22 15 5 38 38 H 1.09002 * 109.47382 * 179.97438 * 25 24 23 39 39 H 1.09001 * 109.46938 * 59.99845 * 25 24 23 40 40 H 1.09004 * 109.46926 * 299.99967 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2897 2.3738 0.0048 5 6 1.9115 3.6055 -0.0001 6 6 1.0859 4.8663 0.0000 7 6 0.9091 5.3509 -1.4160 8 1 1.3501 4.8008 -2.2340 9 6 0.1844 6.4967 -1.6670 10 7 -0.3531 7.1664 -0.6708 11 14 -0.0355 7.0971 -3.4222 12 1 -1.2614 6.4923 -4.0024 13 1 -0.1635 8.5766 -3.4269 14 1 1.1437 6.6996 -4.2326 15 6 3.3047 3.6839 -0.0054 16 6 3.9727 5.0033 -0.0111 17 6 4.9610 5.3985 0.8197 18 7 5.3864 6.6244 0.6074 19 6 4.8237 7.2894 -0.3454 20 6 5.1768 8.7019 -0.7339 21 16 3.6251 6.3381 -1.1077 22 6 4.0664 2.5146 -0.0052 23 6 3.4371 1.2830 -0.0004 24 8 4.1765 0.1417 -0.0007 25 6 5.5979 0.2894 -0.0069 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 0.2113 2.3146 0.0081 30 1 0.1093 4.6611 0.4384 31 1 1.5934 5.6328 0.5857 32 1 -0.8632 7.9722 -0.8475 33 1 5.3671 4.7623 1.5922 34 1 5.9613 8.6853 -1.4904 35 1 4.2944 9.1995 -1.1363 36 1 5.5302 9.2427 0.1441 37 1 5.1449 2.5714 -0.0097 38 1 6.0656 -0.6952 -0.0060 39 1 5.9097 0.8401 0.8806 40 1 5.9025 0.8360 -0.8994 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243378639.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:47 Heat of formation + Delta-G solvation = -30.827519 kcal Electronic energy + Delta-G solvation = -24499.445962 eV Core-core repulsion = 20984.964664 eV Total energy + Delta-G solvation = -3514.481298 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.57780 -40.32977 -39.35946 -38.36489 -35.21990 -33.51035 -32.61072 -31.39517 -29.43833 -28.73721 -28.01895 -27.15752 -25.08955 -24.66657 -23.05546 -22.07268 -20.31243 -19.29486 -18.70393 -18.45334 -17.76951 -17.56383 -16.96921 -16.55843 -16.13698 -16.10192 -15.67926 -15.46886 -15.26452 -14.84206 -14.51211 -14.41616 -14.16079 -13.76393 -13.46827 -13.31465 -13.28006 -13.15258 -12.91497 -12.66014 -12.52793 -12.38511 -12.26194 -12.06956 -12.03854 -11.80454 -11.50503 -11.27479 -10.62899 -10.34409 -10.05018 -9.60756 -9.41133 -8.56176 -8.15234 -6.24750 -0.35605 0.35315 0.46663 0.82389 1.19900 1.41207 1.43331 1.51738 1.99239 2.34883 2.39423 2.40081 2.78754 3.17600 3.43108 3.76581 3.88037 4.07439 4.25289 4.27550 4.34235 4.41283 4.44342 4.44968 4.49765 4.62128 4.69425 4.70245 4.74089 4.76413 4.78352 5.00915 5.10286 5.17271 5.33072 5.36242 5.43830 5.64975 5.74837 5.89937 6.11839 6.16253 6.62323 6.80197 6.93155 7.37658 8.90830 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.010742 B = 0.005991 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2606.026171 B = 4672.214628 C = 6675.334529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.322 6.322 3 C 0.099 3.901 4 C -0.175 4.175 5 C -0.045 4.045 6 C 0.061 3.939 7 C -0.498 4.498 8 H 0.054 0.946 9 C 0.035 3.965 10 N -0.914 5.914 11 Si 0.929 3.071 12 H -0.275 1.275 13 H -0.277 1.277 14 H -0.258 1.258 15 C -0.033 4.033 16 C -0.193 4.193 17 C 0.028 3.972 18 N -0.503 5.503 19 C -0.025 4.025 20 C -0.072 4.072 21 S 0.217 5.783 22 C -0.141 4.141 23 C 0.077 3.923 24 O -0.324 6.324 25 C 0.017 3.983 26 H 0.127 0.873 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.140 0.860 30 H 0.005 0.995 31 H 0.008 0.992 32 H 0.266 0.734 33 H 0.186 0.814 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.158 0.842 38 H 0.123 0.877 39 H 0.064 0.936 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.878 -8.076 -0.423 12.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.236 6.236 3 C 0.053 3.947 4 C -0.194 4.194 5 C -0.047 4.047 6 C 0.023 3.977 7 C -0.539 4.539 8 H 0.072 0.928 9 C -0.166 4.166 10 N -0.552 5.552 11 Si 0.753 3.247 12 H -0.200 1.200 13 H -0.203 1.203 14 H -0.182 1.182 15 C -0.036 4.036 16 C -0.315 4.315 17 C -0.126 4.126 18 N -0.219 5.219 19 C -0.299 4.299 20 C -0.132 4.132 21 S 0.481 5.519 22 C -0.161 4.161 23 C 0.031 3.969 24 O -0.239 6.239 25 C -0.077 4.077 26 H 0.145 0.855 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.158 0.842 30 H 0.024 0.976 31 H 0.026 0.974 32 H 0.075 0.925 33 H 0.203 0.797 34 H 0.120 0.880 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.175 0.825 38 H 0.141 0.859 39 H 0.082 0.918 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.594 -7.738 -0.957 11.603 hybrid contribution -0.401 0.289 0.131 0.511 sum 8.193 -7.448 -0.826 11.104 Atomic orbital electron populations 1.23321 0.76877 1.05506 1.01872 1.86087 1.22913 1.25562 1.88996 1.18418 0.89536 0.85119 1.01601 1.20910 1.00396 0.90329 1.07766 1.20325 0.93177 0.95982 0.95224 1.18129 0.93106 0.89393 0.97025 1.21012 1.32192 1.08818 0.91858 0.92796 1.25534 0.94722 0.96380 1.00004 1.70052 1.34653 1.17804 1.32728 0.85971 0.79380 0.78026 0.81282 1.20040 1.20262 1.18219 1.17504 0.91550 0.89663 1.04903 1.24348 1.04008 0.99286 1.03885 1.22083 0.96749 0.92466 1.01321 1.66201 1.29311 1.07211 1.19128 1.28110 0.98197 1.04338 0.99243 1.20464 1.03146 0.86288 1.03287 1.85563 1.28912 1.05073 1.32349 1.21111 1.00649 0.89091 1.05262 1.17991 0.88187 0.86149 1.04532 1.86112 1.20507 1.27689 1.89567 1.23345 0.76907 1.05432 1.02050 0.85500 0.92271 0.92581 0.84196 0.97627 0.97426 0.92497 0.79667 0.88028 0.89979 0.89298 0.82501 0.85928 0.91777 0.92248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.81 113.37 1.11 1.55 16 2 O -0.32 -10.39 10.27 -79.49 -0.82 -11.20 16 3 C 0.10 3.56 6.70 22.62 0.15 3.71 16 4 C -0.18 -6.77 8.65 22.31 0.19 -6.58 16 5 C -0.05 -1.96 5.10 -19.61 -0.10 -2.06 16 6 C 0.06 3.05 4.38 29.10 0.13 3.18 16 7 C -0.50 -25.64 6.27 25.60 0.16 -25.48 16 8 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 9 C 0.03 1.81 5.46 84.65 0.46 2.27 16 10 N -0.91 -50.79 13.29 21.45 0.28 -50.51 16 11 Si 0.93 40.59 29.54 68.60 2.03 42.62 16 12 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 13 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 14 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 15 C -0.03 -1.32 5.79 -20.09 -0.12 -1.44 16 16 C -0.19 -7.68 5.03 24.09 0.12 -7.56 16 17 C 0.03 1.03 11.20 84.00 0.94 1.97 16 18 N -0.50 -18.84 10.52 -190.61 -2.01 -20.84 16 19 C -0.03 -0.91 7.38 88.51 0.65 -0.26 16 20 C -0.07 -1.93 10.46 71.23 0.75 -1.19 16 21 S 0.22 8.87 19.18 -56.49 -1.08 7.79 16 22 C -0.14 -4.65 8.68 22.60 0.20 -4.45 16 23 C 0.08 2.59 6.69 22.53 0.15 2.74 16 24 O -0.32 -9.69 10.27 -79.42 -0.82 -10.50 16 25 C 0.02 0.33 9.81 113.37 1.11 1.44 16 26 H 0.13 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.06 1.35 7.65 -2.39 -0.02 1.33 16 28 H 0.06 1.34 7.66 -2.39 -0.02 1.32 16 29 H 0.14 5.09 6.27 -2.91 -0.02 5.08 16 30 H 0.01 0.29 8.05 -2.39 -0.02 0.27 16 31 H 0.01 0.41 6.79 -2.38 -0.02 0.40 16 32 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 33 H 0.19 5.65 8.06 -2.91 -0.02 5.62 16 34 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.16 4.21 6.29 -2.91 -0.02 4.20 16 38 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.06 1.10 7.66 -2.39 -0.02 1.09 16 40 H 0.06 1.08 7.66 -2.38 -0.02 1.06 16 Total: -1.00 -65.13 348.65 4.56 -60.56 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 1.06 Total: 14.23 kcal Atomic # 6 Polarization: -38.05 SS G_CDS: 5.91 Total: -32.14 kcal Atomic # 7 Polarization: -69.63 SS G_CDS: -1.72 Total: -71.35 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -1.63 Total: -21.70 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.62 kcal Atomic # 16 Polarization: 8.87 SS G_CDS: -1.08 Total: 7.79 kcal Total: -65.13 4.56 -60.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243378639.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.737 kcal (2) G-P(sol) polarization free energy of solvation -65.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds