Wall clock time and date at job start Tue Mar 31 2020 12:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53005 * 109.47130 * 227.62129 * 3 2 1 5 5 N 1.46896 * 109.47450 * 179.83359 * 4 3 2 6 6 C 1.46906 * 111.00069 * 298.46679 * 5 4 3 7 7 C 1.50694 * 109.47267 * 293.12081 * 6 5 4 8 8 H 1.08009 * 119.99710 * 354.95232 * 7 6 5 9 9 C 1.37871 * 120.00425 * 174.95942 * 7 6 5 10 10 N 1.31514 * 119.99895 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00351 * 179.97438 * 9 7 6 12 12 H 1.48508 * 109.47037 * 59.99811 * 11 9 7 13 13 H 1.48499 * 109.47344 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47190 * 299.99759 * 11 9 7 15 15 C 1.46905 * 110.99700 * 62.41726 * 5 4 3 16 16 C 1.50700 * 109.46995 * 66.04767 * 15 5 4 17 17 C 1.38683 * 126.17824 * 260.02777 * 16 15 5 18 18 N 1.31392 * 108.98215 * 179.97438 * 17 16 15 19 19 N 1.39940 * 108.83869 * 0.02562 * 18 17 16 20 20 C 1.36569 * 132.53949 * 180.02562 * 19 18 17 21 21 C 1.35448 * 119.15174 * 179.97438 * 20 19 18 22 22 C 1.40413 * 119.44285 * 0.02562 * 21 20 19 23 23 Cl 1.73598 * 119.88113 * 179.97438 * 22 21 20 24 24 N 1.31344 * 120.24342 * 359.97438 * 22 21 20 25 25 C 1.34010 * 120.78676 * 0.02562 * 24 22 21 26 26 H 1.09000 * 109.47408 * 107.62670 * 3 2 1 27 27 H 1.09000 * 109.47117 * 347.62148 * 3 2 1 28 28 H 1.09011 * 109.46819 * 59.83843 * 4 3 2 29 29 H 1.08993 * 109.47581 * 299.84033 * 4 3 2 30 30 H 1.09000 * 109.46844 * 53.12095 * 6 5 4 31 31 H 1.08995 * 109.47255 * 173.11494 * 6 5 4 32 32 H 0.97003 * 120.00504 * 179.97438 * 10 9 7 33 33 H 1.08997 * 109.46960 * 306.04507 * 15 5 4 34 34 H 1.09002 * 109.46621 * 186.04843 * 15 5 4 35 35 H 1.08003 * 125.51074 * 359.97438 * 17 16 15 36 36 H 1.08002 * 120.42020 * 0.24306 * 20 19 18 37 37 H 1.08001 * 120.27919 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.9732 1.0656 5 7 4.5865 0.9709 1.0684 6 6 5.1103 -0.3608 1.4004 7 6 4.7663 -0.6940 2.8292 8 1 4.2861 0.0437 3.4552 9 6 5.0647 -1.9404 3.3375 10 7 5.6490 -2.8388 2.5752 11 14 4.6389 -2.3532 5.1089 12 1 3.1727 -2.2261 5.3081 13 1 5.0596 -3.7457 5.4075 14 1 5.3452 -1.4163 6.0190 15 6 5.1161 1.4388 -0.2195 16 6 4.7601 2.8906 -0.4114 17 6 3.7169 3.3828 -1.1812 18 7 3.7150 4.6948 -1.1097 19 7 4.7677 5.1038 -0.2832 20 6 5.2022 6.3349 0.1176 21 6 6.2741 6.4204 0.9411 22 6 6.9149 5.2448 1.3642 23 17 8.2901 5.3411 2.4192 24 7 6.4777 4.0725 0.9646 25 6 5.4181 3.9769 0.1498 26 1 2.9712 0.3120 -0.9794 27 1 2.9718 -1.0029 0.2203 28 1 2.7519 0.6635 2.0448 29 1 2.7562 1.9773 0.8438 30 1 4.6649 -1.1021 0.7370 31 1 6.1932 -0.3666 1.2765 32 1 5.8593 -3.7156 2.9329 33 1 4.6823 0.8486 -1.0267 34 1 6.2002 1.3261 -0.2291 35 1 3.0188 2.7845 -1.7480 36 1 4.6948 7.2287 -0.2145 37 1 6.6334 7.3846 1.2690 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001248880666.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:41 Heat of formation + Delta-G solvation = 153.635540 kcal Electronic energy + Delta-G solvation = -23717.543176 eV Core-core repulsion = 20137.769498 eV Total energy + Delta-G solvation = -3579.773678 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.089 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.44172 -38.59118 -37.65955 -36.72181 -35.91459 -34.22541 -32.63447 -31.10981 -30.88297 -29.63348 -26.94880 -25.20235 -24.91180 -23.76081 -22.86500 -21.05357 -19.73301 -18.36597 -17.62818 -17.35520 -16.60389 -16.29266 -16.16016 -15.18610 -14.75658 -14.58674 -14.24962 -14.02202 -13.78529 -13.69602 -13.53468 -13.33425 -13.00140 -12.26673 -12.08844 -11.96722 -11.70715 -11.57807 -11.53218 -11.39245 -11.25434 -11.07817 -10.89839 -10.69190 -10.55389 -10.20855 -9.99893 -9.82230 -9.53850 -9.27155 -8.43236 -7.86714 -7.27422 -6.03086 -4.03830 0.27430 0.63672 1.39082 1.89709 2.48072 3.10950 3.13683 3.18673 3.35105 3.39295 3.42843 3.79870 3.94854 4.23893 4.36203 4.45195 4.79910 4.88674 5.00227 5.14419 5.25851 5.33024 5.43223 5.47662 5.61808 5.66965 5.80736 6.02998 6.16623 6.25661 6.34575 6.45899 6.65649 7.22085 7.27528 7.29180 7.39433 7.79567 7.89471 8.06192 8.13377 8.50549 9.03619 9.60813 11.07062 Molecular weight = 319.09amu Principal moments of inertia in cm(-1) A = 0.010132 B = 0.004627 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2762.822283 B = 6049.578304 C = 8184.795080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C 0.224 3.776 3 C -0.075 4.075 4 C 0.075 3.925 5 N -0.520 5.520 6 C 0.188 3.812 7 C -0.506 4.506 8 H 0.062 0.938 9 C 0.059 3.941 10 N -0.898 5.898 11 Si 0.893 3.107 12 H -0.278 1.278 13 H -0.288 1.288 14 H -0.276 1.276 15 C 0.128 3.872 16 C -0.187 4.187 17 C 0.092 3.908 18 N -0.307 5.307 19 N -0.321 5.321 20 C 0.176 3.824 21 C -0.215 4.215 22 C 0.238 3.762 23 Cl -0.003 7.003 24 N -0.424 5.424 25 C 0.277 3.723 26 H 0.099 0.901 27 H 0.124 0.876 28 H 0.089 0.911 29 H 0.059 0.941 30 H 0.005 0.995 31 H 0.032 0.968 32 H 0.262 0.738 33 H 0.043 0.957 34 H 0.083 0.917 35 H 0.197 0.803 36 H 0.185 0.815 37 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.196 18.572 -7.257 20.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.141 5.141 2 C -0.093 4.093 3 C -0.117 4.117 4 C -0.056 4.056 5 N -0.242 5.242 6 C 0.063 3.937 7 C -0.545 4.545 8 H 0.080 0.920 9 C -0.143 4.143 10 N -0.537 5.537 11 Si 0.721 3.279 12 H -0.204 1.204 13 H -0.214 1.214 14 H -0.202 1.202 15 C -0.001 4.001 16 C -0.200 4.200 17 C -0.086 4.086 18 N -0.131 5.131 19 N -0.094 5.094 20 C 0.041 3.959 21 C -0.240 4.240 22 C 0.044 3.956 23 Cl 0.025 6.975 24 N -0.136 5.136 25 C 0.051 3.949 26 H 0.117 0.883 27 H 0.142 0.858 28 H 0.108 0.892 29 H 0.077 0.923 30 H 0.023 0.977 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.101 0.899 35 H 0.213 0.787 36 H 0.202 0.798 37 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 1.478 18.805 -7.086 20.150 hybrid contribution 0.191 -0.854 0.596 1.059 sum 1.669 17.950 -6.490 19.160 Atomic orbital electron populations 1.81141 1.13229 1.09963 1.09733 1.29316 0.95305 0.92298 0.92374 1.20278 0.81432 1.06545 1.03455 1.22015 0.89482 0.95961 0.98133 1.62389 1.04556 1.30441 1.26802 1.19850 0.95655 0.81750 0.96395 1.21080 1.39128 0.97792 0.96463 0.91981 1.24921 0.95347 0.96316 0.97672 1.69924 1.42135 1.05601 1.36048 0.86642 0.78775 0.77257 0.85249 1.20360 1.21417 1.20197 1.20364 1.00774 0.87066 0.91912 1.19788 0.99398 0.95344 1.05461 1.23816 0.96722 0.91233 0.96807 1.77860 1.05946 1.13945 1.15316 1.47134 1.22667 1.06177 1.33398 1.21875 0.93603 0.87584 0.92824 1.21393 0.98566 1.00300 1.03742 1.22095 0.91035 0.89561 0.92885 1.98447 1.38974 1.97857 1.62198 1.67555 1.10531 1.25479 1.10080 1.19989 0.91442 0.87546 0.95959 0.88297 0.85832 0.89233 0.92290 0.97748 0.95035 0.92880 0.93901 0.89857 0.78673 0.79799 0.81001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -8.35 18.54 42.15 0.78 -7.57 16 2 C 0.22 3.57 15.43 -20.76 -0.32 3.25 16 3 C -0.08 -1.09 5.05 -29.52 -0.15 -1.24 16 4 C 0.07 1.26 4.94 -3.82 -0.02 1.24 16 5 N -0.52 -9.80 4.69 -237.51 -1.11 -10.92 16 6 C 0.19 4.32 4.52 -4.98 -0.02 4.30 16 7 C -0.51 -13.21 8.40 -34.45 -0.29 -13.50 16 8 H 0.06 1.64 7.36 -52.48 -0.39 1.26 16 9 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 10 N -0.90 -25.23 13.29 55.43 0.74 -24.49 16 11 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 13 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 15 C 0.13 2.00 5.26 -4.97 -0.03 1.97 16 16 C -0.19 -2.72 4.76 -104.23 -0.50 -3.22 16 17 C 0.09 1.15 11.16 -17.58 -0.20 0.95 16 18 N -0.31 -4.06 12.66 30.47 0.39 -3.67 16 19 N -0.32 -4.12 3.90 -12.21 -0.05 -4.17 16 20 C 0.18 1.53 11.30 -16.44 -0.19 1.34 16 21 C -0.21 -1.74 9.84 -39.76 -0.39 -2.13 16 22 C 0.24 2.83 7.33 -16.94 -0.12 2.70 16 23 Cl 0.00 -0.04 29.13 -51.86 -1.51 -1.55 16 24 N -0.42 -6.56 10.47 -9.33 -0.10 -6.66 16 25 C 0.28 4.18 7.86 -155.53 -1.22 2.96 16 26 H 0.10 1.13 6.34 -51.93 -0.33 0.81 16 27 H 0.12 2.03 6.28 -51.93 -0.33 1.70 16 28 H 0.09 1.72 6.98 -51.92 -0.36 1.36 16 29 H 0.06 0.92 6.65 -51.93 -0.35 0.58 16 30 H 0.00 0.11 6.01 -51.93 -0.31 -0.20 16 31 H 0.03 0.80 7.91 -51.93 -0.41 0.39 16 32 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 33 H 0.04 0.57 6.08 -51.93 -0.32 0.25 16 34 H 0.08 1.41 7.92 -51.93 -0.41 1.00 16 35 H 0.20 1.80 8.06 -52.48 -0.42 1.38 16 36 H 0.18 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.17 0.70 8.06 -52.49 -0.42 0.27 16 LS Contribution 338.86 15.07 5.11 5.11 Total: -1.00 -32.48 338.86 -7.92 -40.41 By element: Atomic # 1 Polarization: 0.83 SS G_CDS: -3.60 Total: -2.77 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: -3.54 Total: 0.12 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: 0.65 Total: -57.47 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 17 Polarization: -0.04 SS G_CDS: -1.51 Total: -1.55 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.48 -7.92 -40.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248880666.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.042 kcal (2) G-P(sol) polarization free energy of solvation -32.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds