Wall clock time and date at job start Tue Mar 31 2020 12:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53005 * 109.47130 * 227.62129 * 3 2 1 5 5 N 1.46896 * 109.47450 * 179.83359 * 4 3 2 6 6 C 1.46906 * 111.00069 * 298.46679 * 5 4 3 7 7 C 1.50694 * 109.47267 * 293.12081 * 6 5 4 8 8 H 1.08009 * 119.99710 * 354.95232 * 7 6 5 9 9 C 1.37871 * 120.00425 * 174.95942 * 7 6 5 10 10 N 1.31514 * 119.99895 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00351 * 179.97438 * 9 7 6 12 12 H 1.48508 * 109.47037 * 59.99811 * 11 9 7 13 13 H 1.48499 * 109.47344 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47190 * 299.99759 * 11 9 7 15 15 C 1.46905 * 110.99700 * 62.41726 * 5 4 3 16 16 C 1.50700 * 109.46995 * 66.04767 * 15 5 4 17 17 C 1.38683 * 126.17824 * 260.02777 * 16 15 5 18 18 N 1.31392 * 108.98215 * 179.97438 * 17 16 15 19 19 N 1.39940 * 108.83869 * 0.02562 * 18 17 16 20 20 C 1.36569 * 132.53949 * 180.02562 * 19 18 17 21 21 C 1.35448 * 119.15174 * 179.97438 * 20 19 18 22 22 C 1.40413 * 119.44285 * 0.02562 * 21 20 19 23 23 Cl 1.73598 * 119.88113 * 179.97438 * 22 21 20 24 24 N 1.31344 * 120.24342 * 359.97438 * 22 21 20 25 25 C 1.34010 * 120.78676 * 0.02562 * 24 22 21 26 26 H 1.09000 * 109.47408 * 107.62670 * 3 2 1 27 27 H 1.09000 * 109.47117 * 347.62148 * 3 2 1 28 28 H 1.09011 * 109.46819 * 59.83843 * 4 3 2 29 29 H 1.08993 * 109.47581 * 299.84033 * 4 3 2 30 30 H 1.09000 * 109.46844 * 53.12095 * 6 5 4 31 31 H 1.08995 * 109.47255 * 173.11494 * 6 5 4 32 32 H 0.97003 * 120.00504 * 179.97438 * 10 9 7 33 33 H 1.08997 * 109.46960 * 306.04507 * 15 5 4 34 34 H 1.09002 * 109.46621 * 186.04843 * 15 5 4 35 35 H 1.08003 * 125.51074 * 359.97438 * 17 16 15 36 36 H 1.08002 * 120.42020 * 0.24306 * 20 19 18 37 37 H 1.08001 * 120.27919 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.9732 1.0656 5 7 4.5865 0.9709 1.0684 6 6 5.1103 -0.3608 1.4004 7 6 4.7663 -0.6940 2.8292 8 1 4.2861 0.0437 3.4552 9 6 5.0647 -1.9404 3.3375 10 7 5.6490 -2.8388 2.5752 11 14 4.6389 -2.3532 5.1089 12 1 3.1727 -2.2261 5.3081 13 1 5.0596 -3.7457 5.4075 14 1 5.3452 -1.4163 6.0190 15 6 5.1161 1.4388 -0.2195 16 6 4.7601 2.8906 -0.4114 17 6 3.7169 3.3828 -1.1812 18 7 3.7150 4.6948 -1.1097 19 7 4.7677 5.1038 -0.2832 20 6 5.2022 6.3349 0.1176 21 6 6.2741 6.4204 0.9411 22 6 6.9149 5.2448 1.3642 23 17 8.2901 5.3411 2.4192 24 7 6.4777 4.0725 0.9646 25 6 5.4181 3.9769 0.1498 26 1 2.9712 0.3120 -0.9794 27 1 2.9718 -1.0029 0.2203 28 1 2.7519 0.6635 2.0448 29 1 2.7562 1.9773 0.8438 30 1 4.6649 -1.1021 0.7370 31 1 6.1932 -0.3666 1.2765 32 1 5.8593 -3.7156 2.9329 33 1 4.6823 0.8486 -1.0267 34 1 6.2002 1.3261 -0.2291 35 1 3.0188 2.7845 -1.7480 36 1 4.6948 7.2287 -0.2145 37 1 6.6334 7.3846 1.2690 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001248880666.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:40 Heat of formation + Delta-G solvation = 132.645655 kcal Electronic energy + Delta-G solvation = -23718.453366 eV Core-core repulsion = 20137.769498 eV Total energy + Delta-G solvation = -3580.683868 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.089 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.35613 -39.64796 -38.90343 -37.62145 -37.27971 -35.22989 -34.55797 -32.09319 -31.96753 -31.02126 -28.56024 -26.47712 -25.77164 -25.26932 -24.02409 -22.21725 -21.06207 -19.32008 -18.76887 -18.49138 -18.12197 -17.36436 -17.27754 -16.73582 -16.22471 -15.72048 -15.50953 -15.20443 -15.02537 -14.64163 -14.50958 -14.40960 -14.35037 -13.92225 -13.52874 -13.28176 -13.08853 -12.92598 -12.72155 -12.67221 -12.47193 -12.38046 -12.30929 -12.20105 -12.05369 -11.79250 -11.43012 -11.20309 -10.89213 -10.49492 -10.40016 -8.91887 -8.71408 -8.09533 -6.16102 -0.58596 -0.18941 0.51071 1.07212 1.44768 1.45437 1.52445 1.56970 1.80578 1.84158 2.24867 2.46915 2.98706 3.05767 3.10673 3.23699 3.51269 3.63822 4.00690 4.16595 4.20345 4.26912 4.34959 4.45174 4.47040 4.59426 4.74472 4.83203 4.99503 5.05472 5.24699 5.31813 5.45170 5.48758 5.53427 5.77374 6.20543 6.35295 6.46163 6.47134 6.63879 6.78336 6.99947 7.52282 8.99071 Molecular weight = 319.09amu Principal moments of inertia in cm(-1) A = 0.010132 B = 0.004627 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2762.822283 B = 6049.578304 C = 8184.795080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C 0.246 3.754 3 C -0.062 4.062 4 C 0.083 3.917 5 N -0.532 5.532 6 C 0.204 3.796 7 C -0.513 4.513 8 H 0.053 0.947 9 C 0.013 3.987 10 N -0.927 5.927 11 Si 0.947 3.053 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.276 1.276 15 C 0.136 3.864 16 C -0.217 4.217 17 C 0.103 3.897 18 N -0.319 5.319 19 N -0.326 5.326 20 C 0.177 3.823 21 C -0.202 4.202 22 C 0.235 3.765 23 Cl -0.001 7.001 24 N -0.482 5.482 25 C 0.264 3.736 26 H 0.138 0.862 27 H 0.108 0.892 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.002 0.998 31 H 0.001 0.999 32 H 0.262 0.738 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.226 0.774 36 H 0.231 0.769 37 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.473 20.903 -7.844 22.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.174 5.174 2 C -0.071 4.071 3 C -0.103 4.103 4 C -0.048 4.048 5 N -0.255 5.255 6 C 0.078 3.922 7 C -0.552 4.552 8 H 0.071 0.929 9 C -0.186 4.186 10 N -0.568 5.568 11 Si 0.774 3.226 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.201 1.201 15 C 0.008 3.992 16 C -0.230 4.230 17 C -0.075 4.075 18 N -0.143 5.143 19 N -0.098 5.098 20 C 0.044 3.956 21 C -0.227 4.227 22 C 0.044 3.956 23 Cl 0.027 6.973 24 N -0.196 5.196 25 C 0.036 3.964 26 H 0.156 0.844 27 H 0.125 0.875 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.242 0.758 36 H 0.247 0.753 37 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 0.759 21.180 -7.668 22.538 hybrid contribution 0.524 -1.402 0.811 1.703 sum 1.283 19.778 -6.857 20.972 Atomic orbital electron populations 1.81167 1.14231 1.11027 1.11011 1.29369 0.95202 0.91248 0.91233 1.20190 0.80466 1.05014 1.04660 1.21852 0.88178 0.97319 0.97415 1.62201 1.05804 1.27828 1.29658 1.19462 0.93783 0.83987 0.94926 1.21385 1.38300 0.97520 0.97969 0.92889 1.25601 0.95491 0.96448 1.01037 1.70020 1.43342 1.05880 1.37513 0.85773 0.78611 0.77001 0.81230 1.19875 1.21041 1.20098 1.20232 0.99443 0.88645 0.90887 1.19664 1.01225 0.94411 1.07713 1.24206 0.96175 0.91173 0.95983 1.77809 1.06375 1.14250 1.15863 1.47377 1.22323 1.06957 1.33162 1.22819 0.93415 0.87613 0.91779 1.21876 0.97581 1.00646 1.02568 1.22637 0.90793 0.90218 0.91992 1.98448 1.38955 1.97789 1.62093 1.67489 1.12104 1.27697 1.12309 1.20143 0.91573 0.88707 0.95943 0.84394 0.87456 0.92172 0.90593 0.98053 0.98127 0.92936 0.91271 0.92140 0.75758 0.75280 0.76509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -17.33 18.54 20.00 0.37 -16.96 16 2 C 0.25 7.50 15.43 89.44 1.38 8.88 16 3 C -0.06 -1.71 5.05 28.79 0.15 -1.56 16 4 C 0.08 2.74 4.94 86.31 0.43 3.17 16 5 N -0.53 -20.36 4.69 -905.35 -4.24 -24.60 16 6 C 0.20 9.67 4.52 85.55 0.39 10.06 16 7 C -0.51 -27.45 8.40 25.60 0.21 -27.23 16 8 H 0.05 2.87 7.36 -2.91 -0.02 2.85 16 9 C 0.01 0.69 5.46 84.65 0.46 1.16 16 10 N -0.93 -53.06 13.29 21.45 0.28 -52.77 16 11 Si 0.95 43.90 29.54 68.60 2.03 45.93 16 12 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 13 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 14 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 15 C 0.14 4.25 5.26 85.56 0.45 4.70 16 16 C -0.22 -6.13 4.76 -19.61 -0.09 -6.23 16 17 C 0.10 2.33 11.16 84.86 0.95 3.28 16 18 N -0.32 -7.68 12.66 -57.50 -0.73 -8.41 16 19 N -0.33 -7.68 3.90 -192.54 -0.75 -8.43 16 20 C 0.18 2.47 11.30 83.31 0.94 3.41 16 21 C -0.20 -2.64 9.84 22.15 0.22 -2.42 16 22 C 0.23 5.32 7.33 85.30 0.63 5.94 16 23 Cl 0.00 -0.03 29.13 -2.72 -0.08 -0.11 16 24 N -0.48 -14.94 10.47 -183.43 -1.92 -16.86 16 25 C 0.26 7.81 7.86 133.13 1.05 8.85 16 26 H 0.14 2.75 6.34 -2.39 -0.02 2.74 16 27 H 0.11 3.47 6.28 -2.39 -0.02 3.45 16 28 H 0.06 2.34 6.98 -2.38 -0.02 2.33 16 29 H 0.08 2.28 6.65 -2.39 -0.02 2.26 16 30 H 0.00 0.09 6.01 -2.39 -0.01 0.07 16 31 H 0.00 0.03 7.91 -2.39 -0.02 0.01 16 32 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 33 H 0.07 1.74 6.08 -2.39 -0.01 1.72 16 34 H 0.06 2.14 7.92 -2.39 -0.02 2.12 16 35 H 0.23 3.36 8.06 -2.91 -0.02 3.34 16 36 H 0.23 0.94 8.06 -2.91 -0.02 0.91 16 37 H 0.22 0.72 8.06 -2.91 -0.02 0.70 16 Total: -1.00 -73.20 338.86 3.24 -69.96 By element: Atomic # 1 Polarization: -0.88 SS G_CDS: 1.13 Total: 0.25 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: 7.15 Total: 12.00 kcal Atomic # 7 Polarization: -121.04 SS G_CDS: -6.99 Total: -128.03 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 17 Polarization: -0.03 SS G_CDS: -0.08 Total: -0.11 kcal Total: -73.20 3.24 -69.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248880666.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.606 kcal (2) G-P(sol) polarization free energy of solvation -73.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds