Wall clock time and date at job start Tue Mar 31 2020 12:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31578 * 1 3 3 Si 1.86795 * 120.00205 * 2 1 4 4 H 1.48495 * 109.47130 * 239.99820 * 3 2 1 5 5 H 1.48496 * 109.46866 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46721 * 120.00014 * 3 2 1 7 7 C 1.38636 * 119.99605 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99735 * 179.97438 * 7 2 1 9 9 O 1.34812 * 119.99926 * 0.02562 * 7 2 1 10 10 C 1.35781 * 116.99875 * 174.90023 * 9 7 2 11 11 C 1.38914 * 119.99788 * 185.35534 * 10 9 7 12 12 C 1.37987 * 120.00412 * 179.72589 * 11 10 9 13 13 C 1.38950 * 119.99734 * 0.55102 * 12 11 10 14 14 N 1.39895 * 120.00537 * 179.70241 * 13 12 11 15 15 C 1.34771 * 119.99998 * 326.35197 * 14 13 12 16 16 O 1.21630 * 120.00399 * 355.28605 * 15 14 13 17 17 C 1.47066 * 119.99817 * 175.28388 * 15 14 13 18 18 C 1.33018 * 119.99996 * 187.55588 * 17 15 14 19 19 C 1.50660 * 119.83655 * 20.38541 * 18 17 15 20 20 C 1.53687 * 109.15545 * 117.48524 * 19 18 17 21 21 S 1.81614 * 108.98458 * 57.98018 * 20 19 18 22 22 C 1.81620 * 102.56143 * 303.38877 * 21 20 19 23 23 C 1.50652 * 119.84218 * 200.65654 * 18 17 15 24 24 C 1.38952 * 119.98866 * 359.72653 * 13 12 11 25 25 C 1.37997 * 119.99693 * 359.97438 * 24 13 12 26 26 H 0.97003 * 119.99804 * 359.97438 * 1 2 3 27 27 H 1.07995 * 119.99402 * 0.02562 * 11 10 9 28 28 H 1.08007 * 120.00532 * 180.27365 * 12 11 10 29 29 H 0.97003 * 119.99918 * 146.35863 * 14 13 12 30 30 H 1.08000 * 120.00206 * 7.55892 * 17 15 14 31 31 H 1.08999 * 109.47811 * 237.48347 * 19 18 17 32 32 H 1.08998 * 109.48162 * 357.51115 * 19 18 17 33 33 H 1.09004 * 109.66566 * 298.06880 * 20 19 18 34 34 H 1.09003 * 109.54254 * 177.82010 * 20 19 18 35 35 H 1.09002 * 109.54392 * 296.62285 * 22 21 20 36 36 H 1.09003 * 109.61814 * 176.40260 * 22 21 20 37 37 H 1.09008 * 109.47964 * 2.49028 * 23 18 17 38 38 H 1.08997 * 109.47863 * 122.51397 * 23 18 17 39 39 H 1.07998 * 119.99853 * 179.97438 * 24 13 12 40 40 H 1.07993 * 119.99521 * 179.97438 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.1036 1.6963 -1.2124 5 1 1.2848 2.7463 0.0006 6 1 3.1035 1.6962 1.2125 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3347 -2.3681 -0.0016 10 6 2.0701 -3.5045 -0.1096 11 6 1.4348 -4.7341 -0.2292 12 6 2.1820 -5.8884 -0.3447 13 6 3.5698 -5.8220 -0.3298 14 7 4.3275 -6.9928 -0.4406 15 6 3.8718 -8.1433 0.0932 16 8 2.8446 -8.1468 0.7446 17 6 4.6165 -9.3948 -0.1121 18 6 4.0938 -10.5523 0.2834 19 6 2.6082 -10.6666 0.5066 20 6 2.0284 -11.6967 -0.4756 21 16 2.8645 -13.2891 -0.2235 22 6 4.6128 -12.8596 -0.4635 23 6 4.9909 -11.7408 0.5119 24 6 4.2050 -4.5925 -0.2044 25 6 3.4575 -3.4377 -0.0951 26 1 -0.4850 0.8401 0.0004 27 1 0.3562 -4.7860 -0.2366 28 1 1.6881 -6.8440 -0.4421 29 1 5.1808 -6.9765 -0.9015 30 1 5.5877 -9.3741 -0.5839 31 1 2.4182 -10.9895 1.5302 32 1 2.1397 -9.6969 0.3384 33 1 2.1892 -11.3584 -1.4993 34 1 0.9600 -11.8129 -0.2936 35 1 4.7674 -12.5186 -1.4872 36 1 5.2341 -13.7348 -0.2730 37 1 6.0284 -11.4501 0.3471 38 1 4.8709 -12.0953 1.5356 39 1 5.2837 -4.5408 -0.1924 40 1 3.9512 -2.4823 0.0028 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319754101.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:51 Heat of formation + Delta-G solvation = -12.066433 kcal Electronic energy + Delta-G solvation = -23144.134159 eV Core-core repulsion = 19630.466403 eV Total energy + Delta-G solvation = -3513.667756 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.39090 -38.87169 -37.42555 -36.24825 -34.04816 -32.23051 -32.08517 -30.93555 -30.25800 -28.00291 -25.57029 -24.85344 -23.77067 -22.38748 -21.87219 -20.45697 -19.25727 -18.06790 -17.42385 -17.17485 -16.66945 -16.23146 -15.33036 -15.06910 -14.78727 -14.59794 -14.36895 -14.27336 -14.00465 -13.71866 -13.59683 -13.50594 -13.29192 -12.85084 -12.59008 -12.48273 -12.14535 -11.90365 -11.70716 -11.59305 -11.53048 -11.14776 -11.02469 -10.76652 -10.49696 -10.20412 -9.61660 -9.51143 -9.34285 -9.20862 -8.72708 -8.24345 -8.00614 -6.94832 -6.46479 -4.04580 0.91349 1.40757 2.14285 2.17950 2.22296 3.11170 3.11807 3.15764 3.23412 3.32053 3.95117 4.23248 4.34763 4.50658 4.54991 4.70058 4.75449 4.86463 4.96281 5.02773 5.07992 5.22916 5.29199 5.30377 5.43116 5.51962 5.61471 5.72928 5.79407 6.06485 6.12090 6.16091 6.26791 6.36589 6.75624 6.82433 6.95537 7.12664 7.19466 7.38105 7.67647 7.75011 7.97687 8.33127 8.98546 9.68580 10.71270 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.041067 B = 0.002153 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.647839 B =13001.777408 C =13539.496783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.392 4.392 8 H 0.092 0.908 9 O -0.175 6.175 10 C 0.147 3.853 11 C -0.178 4.178 12 C -0.066 4.066 13 C 0.034 3.966 14 N -0.654 5.654 15 C 0.538 3.462 16 O -0.524 6.524 17 C -0.215 4.215 18 C -0.039 4.039 19 C -0.124 4.124 20 C -0.072 4.072 21 S -0.272 6.272 22 C -0.080 4.080 23 C -0.091 4.091 24 C -0.089 4.089 25 C -0.220 4.220 26 H 0.271 0.729 27 H 0.121 0.879 28 H 0.124 0.876 29 H 0.402 0.598 30 H 0.129 0.871 31 H 0.086 0.914 32 H 0.134 0.866 33 H 0.083 0.917 34 H 0.111 0.889 35 H 0.085 0.915 36 H 0.108 0.892 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.110 0.890 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.748 -21.653 -2.342 24.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.469 4.469 8 H 0.109 0.891 9 O -0.078 6.078 10 C 0.093 3.907 11 C -0.198 4.198 12 C -0.085 4.085 13 C -0.059 4.059 14 N -0.296 5.296 15 C 0.328 3.672 16 O -0.403 6.403 17 C -0.236 4.236 18 C -0.041 4.041 19 C -0.162 4.162 20 C -0.220 4.220 21 S -0.046 6.046 22 C -0.228 4.228 23 C -0.130 4.130 24 C -0.110 4.110 25 C -0.240 4.240 26 H 0.081 0.919 27 H 0.139 0.861 28 H 0.142 0.858 29 H 0.236 0.764 30 H 0.147 0.853 31 H 0.105 0.895 32 H 0.151 0.849 33 H 0.102 0.898 34 H 0.129 0.871 35 H 0.104 0.896 36 H 0.127 0.873 37 H 0.104 0.896 38 H 0.115 0.885 39 H 0.128 0.872 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 10.129 -22.448 -1.653 24.683 hybrid contribution 1.697 1.974 -0.561 2.663 sum 11.827 -20.474 -2.214 23.748 Atomic orbital electron populations 1.70040 1.05953 1.27822 1.45780 1.25298 0.95857 0.98853 0.96543 0.85776 0.78699 0.79769 0.79156 1.19504 1.20269 1.19506 1.21270 0.91754 0.80861 1.52983 0.89110 1.83989 1.34242 1.11397 1.78221 1.19416 0.90231 0.88128 0.92904 1.20124 0.99723 0.89822 1.10098 1.20584 0.91724 0.97690 0.98553 1.17233 0.90761 0.84801 1.13058 1.43165 1.23272 1.07875 1.55336 1.18555 0.85146 0.84062 0.79396 1.90646 1.24607 1.85373 1.39701 1.22434 1.02390 0.92190 1.06570 1.22423 0.96165 0.94138 0.91399 1.21733 0.91620 1.02968 0.99835 1.23584 1.02669 0.93257 1.02515 1.86864 1.05102 1.18315 1.94286 1.23409 0.95067 1.01971 1.02376 1.21035 0.98740 0.92567 1.00629 1.20487 0.98423 0.91181 1.00868 1.20972 0.93686 0.98463 1.10834 0.91926 0.86094 0.85826 0.76352 0.85284 0.89549 0.84889 0.89830 0.87097 0.89644 0.87333 0.89633 0.88472 0.87173 0.85100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.16 13.67 55.48 0.76 -24.40 16 2 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 3 Si 0.94 20.28 29.55 -169.99 -5.02 15.26 16 4 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 6 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.39 -10.85 9.48 30.88 0.29 -10.56 16 8 H 0.09 2.29 5.20 -52.49 -0.27 2.02 16 9 O -0.18 -4.98 9.76 0.00 0.00 -4.98 16 10 C 0.15 3.55 6.65 -39.08 -0.26 3.29 16 11 C -0.18 -3.86 9.98 -39.42 -0.39 -4.26 16 12 C -0.07 -1.26 8.65 -39.41 -0.34 -1.60 16 13 C 0.03 0.59 6.28 -83.65 -0.53 0.06 16 14 N -0.65 -8.64 5.33 -10.90 -0.06 -8.70 16 15 C 0.54 7.22 7.28 -12.68 -0.09 7.12 16 16 O -0.52 -8.77 11.08 5.25 0.06 -8.71 16 17 C -0.21 -2.03 9.52 -37.82 -0.36 -2.39 16 18 C -0.04 -0.35 5.04 -101.20 -0.51 -0.86 16 19 C -0.12 -1.27 5.30 -27.55 -0.15 -1.42 16 20 C -0.07 -0.64 6.50 37.51 0.24 -0.40 16 21 S -0.27 -2.44 22.23 -107.50 -2.39 -4.83 16 22 C -0.08 -0.51 6.48 37.24 0.24 -0.27 16 23 C -0.09 -0.59 5.87 -27.82 -0.16 -0.75 16 24 C -0.09 -1.58 9.96 -39.41 -0.39 -1.98 16 25 C -0.22 -4.67 9.16 -39.42 -0.36 -5.03 16 26 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 27 H 0.12 2.55 8.06 -52.49 -0.42 2.12 16 28 H 0.12 2.27 6.41 -52.48 -0.34 1.93 16 29 H 0.40 3.83 8.80 -40.82 -0.36 3.48 16 30 H 0.13 0.83 8.00 -52.49 -0.42 0.41 16 31 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.13 1.71 4.67 -52.68 -0.25 1.46 16 33 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 34 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.41 7.89 -51.92 -0.41 0.00 16 38 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 40 H 0.13 2.74 5.63 -52.49 -0.30 2.45 16 LS Contribution 344.47 15.07 5.19 5.19 Total: -1.00 -32.31 344.47 -9.18 -41.49 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -4.86 Total: 7.75 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: -2.86 Total: -18.07 kcal Atomic # 7 Polarization: -33.80 SS G_CDS: 0.70 Total: -33.10 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: 0.06 Total: -13.70 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: -2.44 SS G_CDS: -2.39 Total: -4.83 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.31 -9.18 -41.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319754101.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.427 kcal (2) G-P(sol) polarization free energy of solvation -32.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds