Wall clock time and date at job start Tue Mar 31 2020 12:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31578 * 1 3 3 Si 1.86795 * 120.00205 * 2 1 4 4 H 1.48495 * 109.47130 * 239.99820 * 3 2 1 5 5 H 1.48496 * 109.46866 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46721 * 120.00014 * 3 2 1 7 7 C 1.38636 * 119.99605 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99735 * 179.97438 * 7 2 1 9 9 O 1.34812 * 119.99926 * 0.02562 * 7 2 1 10 10 C 1.35781 * 116.99875 * 174.90023 * 9 7 2 11 11 C 1.38914 * 119.99788 * 185.35534 * 10 9 7 12 12 C 1.37987 * 120.00412 * 179.72589 * 11 10 9 13 13 C 1.38950 * 119.99734 * 0.55102 * 12 11 10 14 14 N 1.39895 * 120.00537 * 179.70241 * 13 12 11 15 15 C 1.34771 * 119.99998 * 326.35197 * 14 13 12 16 16 O 1.21630 * 120.00399 * 355.28605 * 15 14 13 17 17 C 1.47066 * 119.99817 * 175.28388 * 15 14 13 18 18 C 1.33018 * 119.99996 * 187.55588 * 17 15 14 19 19 C 1.50660 * 119.83655 * 20.38541 * 18 17 15 20 20 C 1.53687 * 109.15545 * 117.48524 * 19 18 17 21 21 S 1.81614 * 108.98458 * 57.98018 * 20 19 18 22 22 C 1.81620 * 102.56143 * 303.38877 * 21 20 19 23 23 C 1.50652 * 119.84218 * 200.65654 * 18 17 15 24 24 C 1.38952 * 119.98866 * 359.72653 * 13 12 11 25 25 C 1.37997 * 119.99693 * 359.97438 * 24 13 12 26 26 H 0.97003 * 119.99804 * 359.97438 * 1 2 3 27 27 H 1.07995 * 119.99402 * 0.02562 * 11 10 9 28 28 H 1.08007 * 120.00532 * 180.27365 * 12 11 10 29 29 H 0.97003 * 119.99918 * 146.35863 * 14 13 12 30 30 H 1.08000 * 120.00206 * 7.55892 * 17 15 14 31 31 H 1.08999 * 109.47811 * 237.48347 * 19 18 17 32 32 H 1.08998 * 109.48162 * 357.51115 * 19 18 17 33 33 H 1.09004 * 109.66566 * 298.06880 * 20 19 18 34 34 H 1.09003 * 109.54254 * 177.82010 * 20 19 18 35 35 H 1.09002 * 109.54392 * 296.62285 * 22 21 20 36 36 H 1.09003 * 109.61814 * 176.40260 * 22 21 20 37 37 H 1.09008 * 109.47964 * 2.49028 * 23 18 17 38 38 H 1.08997 * 109.47863 * 122.51397 * 23 18 17 39 39 H 1.07998 * 119.99853 * 179.97438 * 24 13 12 40 40 H 1.07993 * 119.99521 * 179.97438 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.1036 1.6963 -1.2124 5 1 1.2848 2.7463 0.0006 6 1 3.1035 1.6962 1.2125 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3347 -2.3681 -0.0016 10 6 2.0701 -3.5045 -0.1096 11 6 1.4348 -4.7341 -0.2292 12 6 2.1820 -5.8884 -0.3447 13 6 3.5698 -5.8220 -0.3298 14 7 4.3275 -6.9928 -0.4406 15 6 3.8718 -8.1433 0.0932 16 8 2.8446 -8.1468 0.7446 17 6 4.6165 -9.3948 -0.1121 18 6 4.0938 -10.5523 0.2834 19 6 2.6082 -10.6666 0.5066 20 6 2.0284 -11.6967 -0.4756 21 16 2.8645 -13.2891 -0.2235 22 6 4.6128 -12.8596 -0.4635 23 6 4.9909 -11.7408 0.5119 24 6 4.2050 -4.5925 -0.2044 25 6 3.4575 -3.4377 -0.0951 26 1 -0.4850 0.8401 0.0004 27 1 0.3562 -4.7860 -0.2366 28 1 1.6881 -6.8440 -0.4421 29 1 5.1808 -6.9765 -0.9015 30 1 5.5877 -9.3741 -0.5839 31 1 2.4182 -10.9895 1.5302 32 1 2.1397 -9.6969 0.3384 33 1 2.1892 -11.3584 -1.4993 34 1 0.9600 -11.8129 -0.2936 35 1 4.7674 -12.5186 -1.4872 36 1 5.2341 -13.7348 -0.2730 37 1 6.0284 -11.4501 0.3471 38 1 4.8709 -12.0953 1.5356 39 1 5.2837 -4.5408 -0.1924 40 1 3.9512 -2.4823 0.0028 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319754101.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:51 Heat of formation + Delta-G solvation = -31.921501 kcal Electronic energy + Delta-G solvation = -23144.995140 eV Core-core repulsion = 19630.466403 eV Total energy + Delta-G solvation = -3514.528737 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.61258 -40.48354 -38.63261 -37.48514 -35.42165 -34.16656 -32.73444 -31.89194 -31.77197 -29.47626 -27.38830 -25.82617 -24.44551 -23.95301 -23.21061 -21.78529 -20.20125 -19.81684 -18.95860 -18.28672 -17.86864 -17.26523 -16.50516 -16.36354 -15.93560 -15.75511 -15.72556 -15.47875 -15.18450 -14.96769 -14.80993 -14.54197 -14.35127 -14.19366 -13.92399 -13.60403 -13.34781 -13.27545 -13.10643 -12.74273 -12.68109 -12.46964 -12.34783 -12.15620 -11.91147 -11.31305 -11.04100 -10.88183 -10.57207 -10.43238 -10.03723 -9.84766 -8.70807 -8.59042 -8.45358 -6.12969 0.05112 0.51600 0.67747 0.78556 1.36692 1.47403 1.53344 1.56352 2.16980 2.19236 2.21883 2.83953 3.16026 3.51031 3.58892 3.67060 3.89987 4.00411 4.04755 4.10416 4.12942 4.15976 4.34099 4.44310 4.47886 4.59982 4.66943 4.72805 4.78966 4.85572 4.93745 5.05390 5.08657 5.17140 5.30090 5.38023 5.42244 5.55122 5.61413 5.68799 6.02370 6.16360 6.58464 6.98497 7.26152 7.79229 8.77580 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.041067 B = 0.002153 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.647839 B =13001.777408 C =13539.496783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.026 4.026 3 Si 1.021 2.979 4 H -0.255 1.255 5 H -0.275 1.275 6 H -0.257 1.257 7 C -0.413 4.413 8 H 0.107 0.893 9 O -0.231 6.231 10 C 0.107 3.893 11 C -0.190 4.190 12 C -0.071 4.071 13 C 0.064 3.936 14 N -0.645 5.645 15 C 0.533 3.467 16 O -0.562 6.562 17 C -0.214 4.214 18 C -0.034 4.034 19 C -0.126 4.126 20 C -0.064 4.064 21 S -0.309 6.309 22 C -0.069 4.069 23 C -0.086 4.086 24 C -0.081 4.081 25 C -0.221 4.221 26 H 0.272 0.728 27 H 0.111 0.889 28 H 0.131 0.869 29 H 0.426 0.574 30 H 0.172 0.828 31 H 0.077 0.923 32 H 0.107 0.893 33 H 0.086 0.914 34 H 0.108 0.892 35 H 0.095 0.905 36 H 0.129 0.871 37 H 0.117 0.883 38 H 0.097 0.903 39 H 0.158 0.842 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.340 -23.648 -2.959 28.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.223 4.223 3 Si 0.840 3.160 4 H -0.179 1.179 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.489 4.489 8 H 0.124 0.876 9 O -0.138 6.138 10 C 0.056 3.944 11 C -0.210 4.210 12 C -0.091 4.091 13 C -0.030 4.030 14 N -0.290 5.290 15 C 0.326 3.674 16 O -0.443 6.443 17 C -0.234 4.234 18 C -0.036 4.036 19 C -0.164 4.164 20 C -0.213 4.213 21 S -0.083 6.083 22 C -0.217 4.217 23 C -0.124 4.124 24 C -0.101 4.101 25 C -0.241 4.241 26 H 0.081 0.919 27 H 0.129 0.871 28 H 0.149 0.851 29 H 0.264 0.736 30 H 0.189 0.811 31 H 0.095 0.905 32 H 0.125 0.875 33 H 0.105 0.895 34 H 0.127 0.873 35 H 0.114 0.886 36 H 0.147 0.853 37 H 0.135 0.865 38 H 0.115 0.885 39 H 0.176 0.824 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 14.789 -24.523 -2.289 28.729 hybrid contribution 0.360 2.135 -0.363 2.195 sum 15.149 -22.388 -2.652 27.162 Atomic orbital electron populations 1.70204 1.08139 1.28853 1.48862 1.26647 0.96860 1.02901 0.95889 0.84619 0.77333 0.74057 0.80030 1.17881 1.19942 1.18081 1.21833 0.92683 0.81304 1.53115 0.87619 1.83958 1.35951 1.12562 1.81334 1.19879 0.91804 0.87706 0.95011 1.20251 0.99793 0.90286 1.10641 1.20718 0.92963 0.96893 0.98564 1.17368 0.90366 0.86554 1.08736 1.43117 1.23843 1.06367 1.55701 1.19319 0.84621 0.85104 0.78326 1.90671 1.26442 1.85975 1.41261 1.22474 1.03611 0.89795 1.07569 1.22650 0.95505 0.95402 0.90039 1.21627 0.93217 1.01840 0.99694 1.23471 1.02689 0.92938 1.02157 1.87023 1.08280 1.18532 1.94418 1.23515 0.92428 1.02792 1.02962 1.21081 0.99607 0.91142 1.00603 1.20859 1.00560 0.89695 0.98952 1.21135 0.92596 1.00008 1.10323 0.91893 0.87060 0.85119 0.73553 0.81081 0.90498 0.87522 0.89519 0.87322 0.88595 0.85307 0.86486 0.88463 0.82403 0.85047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.01 13.67 21.61 0.30 -56.71 16 2 C -0.03 -1.46 5.49 84.83 0.47 -0.99 16 3 Si 1.02 42.38 29.55 68.60 2.03 44.41 16 4 H -0.25 -9.80 7.11 99.48 0.71 -9.10 16 5 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 6 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 7 C -0.41 -23.89 9.48 67.91 0.64 -23.24 16 8 H 0.11 5.47 5.20 -2.91 -0.02 5.46 16 9 O -0.23 -14.05 9.76 -22.91 -0.22 -14.27 16 10 C 0.11 5.38 6.65 22.59 0.15 5.53 16 11 C -0.19 -8.65 9.98 22.37 0.22 -8.43 16 12 C -0.07 -2.74 8.65 22.38 0.19 -2.54 16 13 C 0.06 2.06 6.28 38.20 0.24 2.30 16 14 N -0.64 -14.56 5.33 -306.65 -1.64 -16.19 16 15 C 0.53 12.77 7.28 86.56 0.63 13.40 16 16 O -0.56 -18.28 11.08 -4.13 -0.05 -18.32 16 17 C -0.21 -3.12 9.52 23.42 0.22 -2.90 16 18 C -0.03 -0.50 5.04 -17.64 -0.09 -0.59 16 19 C -0.13 -2.48 5.30 30.07 0.16 -2.32 16 20 C -0.06 -1.10 6.50 72.21 0.47 -0.63 16 21 S -0.31 -5.00 22.23 -56.49 -1.26 -6.26 16 22 C -0.07 -0.61 6.48 72.04 0.47 -0.14 16 23 C -0.09 -0.73 5.87 29.89 0.18 -0.56 16 24 C -0.08 -2.63 9.96 22.38 0.22 -2.40 16 25 C -0.22 -9.31 9.16 22.37 0.20 -9.11 16 26 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 27 H 0.11 5.11 8.06 -2.91 -0.02 5.08 16 28 H 0.13 4.82 6.41 -2.91 -0.02 4.80 16 29 H 0.43 5.82 8.80 -92.71 -0.82 5.00 16 30 H 0.17 1.07 8.00 -2.91 -0.02 1.05 16 31 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.11 2.75 4.67 -14.27 -0.07 2.69 16 33 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.12 0.37 7.89 -2.38 -0.02 0.35 16 38 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.16 3.66 8.06 -2.91 -0.02 3.64 16 40 H 0.13 5.46 5.63 -2.91 -0.02 5.44 16 Total: -1.00 -77.22 344.47 3.75 -73.47 By element: Atomic # 1 Polarization: 26.28 SS G_CDS: 0.21 Total: 26.50 kcal Atomic # 6 Polarization: -37.00 SS G_CDS: 4.38 Total: -32.62 kcal Atomic # 7 Polarization: -71.56 SS G_CDS: -1.34 Total: -72.90 kcal Atomic # 8 Polarization: -32.32 SS G_CDS: -0.27 Total: -32.59 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Atomic # 16 Polarization: -5.00 SS G_CDS: -1.26 Total: -6.26 kcal Total: -77.22 3.75 -73.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319754101.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.546 kcal (2) G-P(sol) polarization free energy of solvation -77.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds