Wall clock time and date at job start Tue Mar 31 2020 12:41:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50706 * 1
3 3 S 1.75463 * 124.59947 * 2 1
4 4 C 1.70446 * 92.52837 * 179.81829 * 3 2 1
5 5 N 1.39034 * 124.65356 * 180.18912 * 4 3 2
6 6 C 1.36710 * 125.68607 * 179.84456 * 5 4 3
7 7 C 1.34806 * 108.18858 * 179.82733 * 6 5 4
8 8 C 1.41000 * 107.49721 * 0.42733 * 7 6 5
9 9 C 1.34811 * 107.49851 * 359.73211 * 8 7 6
10 10 C 1.37063 * 110.69006 * 0.32313 * 4 3 2
11 11 C 1.46550 * 123.58952 * 179.89325 * 10 4 3
12 12 O 1.21629 * 119.99601 * 269.69823 * 11 10 4
13 13 O 1.34866 * 120.00367 * 89.70078 * 11 10 4
14 14 C 1.45198 * 117.00326 * 179.97438 * 13 11 10
15 15 H 1.09007 * 109.46900 * 29.99754 * 14 13 11
16 16 C 1.53000 * 109.47199 * 270.00334 * 14 13 11
17 17 C 1.50694 * 109.47115 * 150.00006 * 14 13 11
18 18 H 1.08000 * 120.00563 * 0.02562 * 17 14 13
19 19 C 1.37885 * 119.99902 * 180.02562 * 17 14 13
20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 14
21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 14
22 22 H 1.48506 * 109.46985 * 179.97438 * 21 19 17
23 23 H 1.48494 * 109.47276 * 299.99832 * 21 19 17
24 24 H 1.48498 * 109.47150 * 60.00043 * 21 19 17
25 25 C 1.32569 * 124.59680 * 180.02562 * 2 1 3
26 26 C 1.50688 * 123.42115 * 359.97438 * 25 2 1
27 27 H 1.08995 * 109.46514 * 269.99644 * 1 2 3
28 28 H 1.08994 * 109.46987 * 29.99507 * 1 2 3
29 29 H 1.08998 * 109.46689 * 149.99591 * 1 2 3
30 30 H 1.08003 * 125.90329 * 359.97438 * 6 5 4
31 31 H 1.08005 * 126.25116 * 180.16134 * 7 6 5
32 32 H 1.08010 * 126.25013 * 179.72972 * 8 7 6
33 33 H 1.08001 * 125.90427 * 179.97438 * 9 8 7
34 34 H 1.09002 * 109.47106 * 299.99770 * 16 14 13
35 35 H 1.08998 * 109.47089 * 59.99717 * 16 14 13
36 36 H 1.08995 * 109.47131 * 179.97438 * 16 14 13
37 37 H 0.97001 * 119.99646 * 179.97438 * 20 19 17
38 38 H 1.09006 * 109.47430 * 270.02389 * 26 25 2
39 39 H 1.09005 * 109.47303 * 30.02680 * 26 25 2
40 40 H 1.09004 * 109.47135 * 150.02746 * 26 25 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 16 2.5034 1.4443 0.0000
4 6 3.9477 0.5393 0.0054
5 7 5.2249 1.0887 0.0115
6 6 6.3963 0.3838 0.0189
7 6 7.4172 1.2642 0.0193
8 6 6.8600 2.5594 0.0219
9 6 5.5187 2.4237 0.0170
10 6 3.6773 -0.8044 -0.0001
11 6 4.7141 -1.8401 0.0003
12 8 5.1444 -2.2702 -1.0529
13 8 5.1911 -2.3163 1.1685
14 6 6.2166 -3.3415 1.0929
15 1 6.8034 -3.2022 0.1849
16 6 5.5569 -4.7218 1.0669
17 6 7.1192 -3.2387 2.2952
18 1 6.9399 -2.4792 3.0418
19 6 8.1741 -4.1144 2.4423
20 7 8.3921 -5.0397 1.5334
21 14 9.2933 -3.9865 3.9323
22 1 10.3421 -5.0351 3.8551
23 1 9.9332 -2.6467 3.9572
24 1 8.4942 -4.1765 5.1694
25 6 2.2598 -1.0913 -0.0005
26 6 1.6957 -2.4886 -0.0006
27 1 -0.3632 -0.0001 1.0277
28 1 -0.3633 0.8900 -0.5137
29 1 -0.3632 -0.8900 -0.5139
30 1 6.4878 -0.6923 0.0214
31 1 8.4696 1.0216 0.0219
32 1 7.4078 3.4903 0.0269
33 1 4.8006 3.2303 0.0178
34 1 4.9700 -4.8611 1.9748
35 1 4.9040 -4.7961 0.1972
36 1 6.3267 -5.4913 1.0097
37 1 9.1344 -5.6555 1.6367
38 1 1.5597 -2.8256 1.0271
39 1 0.7344 -2.4924 -0.5145
40 1 2.3851 -3.1587 -0.5144
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001356016512.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:41:47
Heat of formation + Delta-G solvation = -7.476373 kcal
Electronic energy + Delta-G solvation = -24792.654540 eV
Core-core repulsion = 21279.185824 eV
Total energy + Delta-G solvation = -3513.468717 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 319.103 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-41.48305 -39.68472 -37.90720 -35.68523 -33.82858 -33.26347 -30.72687 -29.63095
-29.26143 -28.79700 -25.81034 -25.32621 -24.55777 -21.64956 -20.72450 -20.35920
-19.95430 -18.91262 -17.94249 -16.75846 -16.65283 -16.35609 -15.34690 -15.19431
-14.94106 -14.53444 -14.24575 -14.01865 -13.69277 -13.40943 -13.09621 -12.95241
-12.62798 -12.47430 -12.24819 -12.21949 -11.94852 -11.84455 -11.79676 -11.67451
-11.25231 -11.07895 -11.04857 -10.87979 -10.43637 -10.31421 -9.88006 -9.63740
-9.62441 -8.97959 -8.52808 -8.46866 -8.14650 -7.90058 -6.20805 -4.28054
0.50616 0.96205 1.58014 2.00121 2.67505 2.70646 2.86719 3.14414
3.26244 3.29529 3.32168 3.67283 4.32126 4.59821 4.73243 5.02081
5.05604 5.12379 5.25482 5.31359 5.40311 5.42307 5.52508 5.66232
5.67794 5.71537 5.72677 5.85220 6.09895 6.30101 6.33907 6.37988
6.56628 6.82275 6.83845 6.98213 7.03115 7.18881 7.35599 7.52395
7.64809 7.84864 8.07907 8.50286 8.82025 9.37508 10.86470
Molecular weight = 319.10amu
Principal moments of inertia in cm(-1)
A = 0.013341 B = 0.004896 C = 0.003912
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2098.356434 B = 5717.771338 C = 7156.609409
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.076 4.076
2 C -0.211 4.211
3 S 0.202 5.798
4 C 0.045 3.955
5 N -0.375 5.375
6 C 0.010 3.990
7 C -0.186 4.186
8 C -0.174 4.174
9 C -0.033 4.033
10 C -0.149 4.149
11 C 0.523 3.477
12 O -0.505 6.505
13 O -0.345 6.345
14 C 0.214 3.786
15 H 0.047 0.953
16 C -0.155 4.155
17 C -0.521 4.521
18 H 0.068 0.932
19 C 0.065 3.935
20 N -0.888 5.888
21 Si 0.911 3.089
22 H -0.284 1.284
23 H -0.273 1.273
24 H -0.274 1.274
25 C -0.042 4.042
26 C -0.099 4.099
27 H 0.077 0.923
28 H 0.068 0.932
29 H 0.081 0.919
30 H 0.172 0.828
31 H 0.147 0.853
32 H 0.145 0.855
33 H 0.165 0.835
34 H 0.038 0.962
35 H 0.016 0.984
36 H 0.101 0.899
37 H 0.267 0.733
38 H 0.082 0.918
39 H 0.076 0.924
40 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.904 12.569 -2.973 18.977
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.328 4.328
3 S 0.468 5.532
4 C -0.168 4.168
5 N -0.049 5.049
6 C -0.117 4.117
7 C -0.209 4.209
8 C -0.198 4.198
9 C -0.158 4.158
10 C -0.166 4.166
11 C 0.364 3.636
12 O -0.395 6.395
13 O -0.261 6.261
14 C 0.161 3.839
15 H 0.064 0.936
16 C -0.212 4.212
17 C -0.559 4.559
18 H 0.087 0.913
19 C -0.137 4.137
20 N -0.526 5.526
21 Si 0.738 3.262
22 H -0.210 1.210
23 H -0.199 1.199
24 H -0.199 1.199
25 C -0.053 4.053
26 C -0.158 4.158
27 H 0.095 0.905
28 H 0.087 0.913
29 H 0.099 0.901
30 H 0.189 0.811
31 H 0.165 0.835
32 H 0.162 0.838
33 H 0.182 0.818
34 H 0.057 0.943
35 H 0.035 0.965
36 H 0.119 0.881
37 H 0.077 0.923
38 H 0.100 0.900
39 H 0.095 0.905
40 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges -14.184 13.708 -3.302 20.000
hybrid contribution 1.265 -1.643 0.674 2.181
sum -12.919 12.065 -2.628 17.871
Atomic orbital electron populations
1.20318 0.86839 1.03279 1.02992 1.23839 1.00273 0.94515 1.14161
1.82717 0.89795 1.07009 1.73641 1.21687 0.90768 0.95846 1.08471
1.40712 1.01834 1.06579 1.55751 1.22477 0.82981 0.99100 1.07152
1.21054 0.98872 0.92131 1.08876 1.20999 0.92687 0.98099 1.08037
1.21890 0.97615 0.83470 1.12825 1.19329 0.93882 0.90343 1.13088
1.20039 0.79916 0.79912 0.83737 1.90880 1.57550 1.57971 1.33109
1.86749 1.54031 1.54120 1.31228 1.20737 0.82608 0.81188 0.99335
0.93559 1.22166 1.00654 1.00742 0.97682 1.20946 1.11099 1.17200
1.06670 0.91333 1.24863 0.97118 0.94660 0.97084 1.69884 1.30260
1.18226 1.34216 0.86333 0.79759 0.78016 0.82077 1.20981 1.19853
1.19945 1.19344 0.88743 0.96974 1.00232 1.20588 1.01055 0.90795
1.03339 0.90477 0.91276 0.90055 0.81115 0.83483 0.83772 0.81762
0.94295 0.96520 0.88056 0.92281 0.89970 0.90549 0.90944
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.58 10.03 36.01 0.36 -0.22 16
2 C -0.21 -2.51 6.43 -36.21 -0.23 -2.74 16
3 S 0.20 2.42 22.28 -107.50 -2.39 0.03 16
4 C 0.05 0.77 7.00 -14.71 -0.10 0.67 16
5 N -0.38 -6.68 2.95 -62.82 -0.19 -6.86 16
6 C 0.01 0.20 10.42 -16.59 -0.17 0.03 16
7 C -0.19 -3.23 10.86 -39.75 -0.43 -3.66 16
8 C -0.17 -2.53 10.86 -39.75 -0.43 -2.96 16
9 C -0.03 -0.49 10.94 -16.60 -0.18 -0.67 16
10 C -0.15 -2.80 5.87 -104.46 -0.61 -3.41 16
11 C 0.52 11.78 3.77 34.08 0.13 11.91 16
12 O -0.50 -12.53 15.98 -19.37 -0.31 -12.84 16
13 O -0.35 -8.54 9.50 -40.94 -0.39 -8.93 16
14 C 0.21 5.74 2.52 -27.89 -0.07 5.67 16
15 H 0.05 1.36 7.16 -51.92 -0.37 0.99 16
16 C -0.15 -3.91 9.33 37.16 0.35 -3.56 16
17 C -0.52 -14.62 8.90 -34.44 -0.31 -14.93 16
18 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16
19 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16
20 N -0.89 -25.01 11.32 55.43 0.63 -24.39 16
21 Si 0.91 21.14 29.54 -169.99 -5.02 16.12 16
22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16
23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16
24 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16
25 C -0.04 -0.63 6.00 -104.02 -0.62 -1.25 16
26 C -0.10 -1.28 9.67 36.00 0.35 -0.93 16
27 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16
28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16
29 H 0.08 0.55 6.64 -51.93 -0.34 0.20 16
30 H 0.17 3.95 4.79 -52.48 -0.25 3.70 16
31 H 0.15 2.34 8.06 -52.48 -0.42 1.91 16
32 H 0.14 1.62 8.06 -52.48 -0.42 1.20 16
33 H 0.17 1.80 7.89 -52.49 -0.41 1.39 16
34 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16
35 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16
36 H 0.10 2.72 6.07 -51.93 -0.32 2.41 16
37 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16
38 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16
39 H 0.08 0.73 6.62 -51.93 -0.34 0.38 16
40 H 0.07 1.09 7.69 -51.93 -0.40 0.69 16
LS Contribution 350.59 15.07 5.28 5.28
Total: -1.00 -32.07 350.59 -9.41 -41.48
By element:
Atomic # 1 Polarization: 9.44 SS G_CDS: -4.95 Total: 4.50 kcal
Atomic # 6 Polarization: -12.31 SS G_CDS: -2.08 Total: -14.38 kcal
Atomic # 7 Polarization: -31.69 SS G_CDS: 0.44 Total: -31.25 kcal
Atomic # 8 Polarization: -21.07 SS G_CDS: -0.70 Total: -21.77 kcal
Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal
Atomic # 16 Polarization: 2.42 SS G_CDS: -2.39 Total: 0.03 kcal
Total LS contribution 5.28 Total: 5.28 kcal
Total: -32.07 -9.41 -41.48 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001356016512.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 34.004 kcal
(2) G-P(sol) polarization free energy of solvation -32.068 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.935 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.412 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.480 kcal
(6) G-S(sol) free energy of system = (1) + (5) -7.476 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds