Wall clock time and date at job start Tue Mar 31 2020 12:41:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50706 * 1
3 3 S 1.75463 * 124.59947 * 2 1
4 4 C 1.70446 * 92.52837 * 179.81829 * 3 2 1
5 5 N 1.39034 * 124.65356 * 180.18912 * 4 3 2
6 6 C 1.36710 * 125.68607 * 179.84456 * 5 4 3
7 7 C 1.34806 * 108.18858 * 179.82733 * 6 5 4
8 8 C 1.41000 * 107.49721 * 0.42733 * 7 6 5
9 9 C 1.34811 * 107.49851 * 359.73211 * 8 7 6
10 10 C 1.37063 * 110.69006 * 0.32313 * 4 3 2
11 11 C 1.46550 * 123.58952 * 179.89325 * 10 4 3
12 12 O 1.21629 * 119.99601 * 269.69823 * 11 10 4
13 13 O 1.34866 * 120.00367 * 89.70078 * 11 10 4
14 14 C 1.45198 * 117.00326 * 179.97438 * 13 11 10
15 15 H 1.09007 * 109.46900 * 29.99754 * 14 13 11
16 16 C 1.53000 * 109.47199 * 270.00334 * 14 13 11
17 17 C 1.50694 * 109.47115 * 150.00006 * 14 13 11
18 18 H 1.08000 * 120.00563 * 0.02562 * 17 14 13
19 19 C 1.37885 * 119.99902 * 180.02562 * 17 14 13
20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 14
21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 14
22 22 H 1.48506 * 109.46985 * 179.97438 * 21 19 17
23 23 H 1.48494 * 109.47276 * 299.99832 * 21 19 17
24 24 H 1.48498 * 109.47150 * 60.00043 * 21 19 17
25 25 C 1.32569 * 124.59680 * 180.02562 * 2 1 3
26 26 C 1.50688 * 123.42115 * 359.97438 * 25 2 1
27 27 H 1.08995 * 109.46514 * 269.99644 * 1 2 3
28 28 H 1.08994 * 109.46987 * 29.99507 * 1 2 3
29 29 H 1.08998 * 109.46689 * 149.99591 * 1 2 3
30 30 H 1.08003 * 125.90329 * 359.97438 * 6 5 4
31 31 H 1.08005 * 126.25116 * 180.16134 * 7 6 5
32 32 H 1.08010 * 126.25013 * 179.72972 * 8 7 6
33 33 H 1.08001 * 125.90427 * 179.97438 * 9 8 7
34 34 H 1.09002 * 109.47106 * 299.99770 * 16 14 13
35 35 H 1.08998 * 109.47089 * 59.99717 * 16 14 13
36 36 H 1.08995 * 109.47131 * 179.97438 * 16 14 13
37 37 H 0.97001 * 119.99646 * 179.97438 * 20 19 17
38 38 H 1.09006 * 109.47430 * 270.02389 * 26 25 2
39 39 H 1.09005 * 109.47303 * 30.02680 * 26 25 2
40 40 H 1.09004 * 109.47135 * 150.02746 * 26 25 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 16 2.5034 1.4443 0.0000
4 6 3.9477 0.5393 0.0054
5 7 5.2249 1.0887 0.0115
6 6 6.3963 0.3838 0.0189
7 6 7.4172 1.2642 0.0193
8 6 6.8600 2.5594 0.0219
9 6 5.5187 2.4237 0.0170
10 6 3.6773 -0.8044 -0.0001
11 6 4.7141 -1.8401 0.0003
12 8 5.1444 -2.2702 -1.0529
13 8 5.1911 -2.3163 1.1685
14 6 6.2166 -3.3415 1.0929
15 1 6.8034 -3.2022 0.1849
16 6 5.5569 -4.7218 1.0669
17 6 7.1192 -3.2387 2.2952
18 1 6.9399 -2.4792 3.0418
19 6 8.1741 -4.1144 2.4423
20 7 8.3921 -5.0397 1.5334
21 14 9.2933 -3.9865 3.9323
22 1 10.3421 -5.0351 3.8551
23 1 9.9332 -2.6467 3.9572
24 1 8.4942 -4.1765 5.1694
25 6 2.2598 -1.0913 -0.0005
26 6 1.6957 -2.4886 -0.0006
27 1 -0.3632 -0.0001 1.0277
28 1 -0.3633 0.8900 -0.5137
29 1 -0.3632 -0.8900 -0.5139
30 1 6.4878 -0.6923 0.0214
31 1 8.4696 1.0216 0.0219
32 1 7.4078 3.4903 0.0269
33 1 4.8006 3.2303 0.0178
34 1 4.9700 -4.8611 1.9748
35 1 4.9040 -4.7961 0.1972
36 1 6.3267 -5.4913 1.0097
37 1 9.1344 -5.6555 1.6367
38 1 1.5597 -2.8256 1.0271
39 1 0.7344 -2.4924 -0.5145
40 1 2.3851 -3.1587 -0.5144
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001356016512.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:41:46
Heat of formation + Delta-G solvation = -24.187673 kcal
Electronic energy + Delta-G solvation = -24793.379197 eV
Core-core repulsion = 21279.185824 eV
Total energy + Delta-G solvation = -3514.193373 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 319.103 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-42.79944 -41.39210 -39.17716 -37.60699 -35.41469 -34.95003 -32.05250 -31.44647
-30.36628 -30.02816 -27.56125 -26.97202 -25.84149 -23.47241 -21.90299 -21.77166
-21.58891 -20.10426 -19.49959 -18.70174 -18.24545 -17.75673 -17.08018 -16.66937
-16.48685 -16.32260 -15.23003 -15.15221 -14.99147 -14.91383 -14.47984 -14.30072
-14.05192 -13.74591 -13.63481 -13.42601 -13.31786 -13.25304 -13.14140 -13.04547
-12.94366 -12.87023 -12.69234 -12.47400 -12.22649 -12.04114 -11.74536 -11.65751
-11.11297 -10.74979 -10.66266 -9.53969 -9.44612 -9.07440 -8.34094 -6.51799
-0.70993 -0.12979 0.49064 0.85658 0.98242 1.36435 1.40090 1.41723
1.50047 1.62750 1.86373 2.02413 2.37851 2.96193 3.41833 3.69866
3.82999 3.93988 4.02829 4.19121 4.27247 4.39940 4.43016 4.52014
4.59096 4.62218 4.68071 4.71626 4.77796 4.84502 4.99731 5.01911
5.02107 5.15562 5.22793 5.36408 5.39795 5.49980 5.71509 5.76325
5.84910 5.93902 6.14895 6.48273 6.73290 7.19050 8.73539
Molecular weight = 319.10amu
Principal moments of inertia in cm(-1)
A = 0.013341 B = 0.004896 C = 0.003912
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2098.356434 B = 5717.771338 C = 7156.609409
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.079 4.079
2 C -0.189 4.189
3 S 0.298 5.702
4 C 0.011 3.989
5 N -0.384 5.384
6 C -0.046 4.046
7 C -0.185 4.185
8 C -0.174 4.174
9 C -0.019 4.019
10 C -0.191 4.191
11 C 0.530 3.470
12 O -0.543 6.543
13 O -0.356 6.356
14 C 0.220 3.780
15 H 0.005 0.995
16 C -0.141 4.141
17 C -0.549 4.549
18 H 0.061 0.939
19 C 0.022 3.978
20 N -0.914 5.914
21 Si 0.982 3.018
22 H -0.272 1.272
23 H -0.269 1.269
24 H -0.264 1.264
25 C -0.075 4.075
26 C -0.096 4.096
27 H 0.096 0.904
28 H 0.093 0.907
29 H 0.095 0.905
30 H 0.126 0.874
31 H 0.150 0.850
32 H 0.184 0.816
33 H 0.209 0.791
34 H 0.047 0.953
35 H 0.022 0.978
36 H 0.085 0.915
37 H 0.273 0.727
38 H 0.084 0.916
39 H 0.114 0.886
40 H 0.037 0.963
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.359 15.745 -1.934 22.788
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.307 4.307
3 S 0.566 5.434
4 C -0.202 4.202
5 N -0.057 5.057
6 C -0.173 4.173
7 C -0.210 4.210
8 C -0.198 4.198
9 C -0.144 4.144
10 C -0.209 4.209
11 C 0.374 3.626
12 O -0.435 6.435
13 O -0.272 6.272
14 C 0.167 3.833
15 H 0.023 0.977
16 C -0.198 4.198
17 C -0.586 4.586
18 H 0.079 0.921
19 C -0.178 4.178
20 N -0.551 5.551
21 Si 0.804 3.196
22 H -0.197 1.197
23 H -0.194 1.194
24 H -0.188 1.188
25 C -0.085 4.085
26 C -0.155 4.155
27 H 0.114 0.886
28 H 0.112 0.888
29 H 0.114 0.886
30 H 0.144 0.856
31 H 0.168 0.832
32 H 0.202 0.798
33 H 0.226 0.774
34 H 0.066 0.934
35 H 0.041 0.959
36 H 0.104 0.896
37 H 0.082 0.918
38 H 0.103 0.897
39 H 0.133 0.867
40 H 0.056 0.944
Dipole moment (debyes) X Y Z Total
from point charges -16.665 16.889 -2.271 23.835
hybrid contribution 1.947 -2.512 0.276 3.190
sum -14.718 14.377 -1.994 20.672
Atomic orbital electron populations
1.20596 0.83164 1.05250 1.04776 1.24495 1.02441 0.93749 1.10006
1.82280 0.85502 1.04870 1.70768 1.22347 0.92495 0.96511 1.08801
1.40866 1.01538 1.07454 1.55888 1.22094 0.85496 0.97804 1.11922
1.21343 0.98680 0.93527 1.07440 1.21413 0.92894 0.97942 1.07531
1.22707 0.98738 0.82847 1.10060 1.19482 0.94556 0.90076 1.16786
1.20721 0.79707 0.79813 0.82332 1.90821 1.59085 1.59606 1.34031
1.86721 1.53623 1.53951 1.32932 1.20427 0.83108 0.82492 0.97313
0.97749 1.21982 1.00117 0.99384 0.98347 1.21137 1.12587 1.17891
1.06973 0.92099 1.25792 0.98126 0.93797 1.00120 1.69999 1.30745
1.18558 1.35802 0.85257 0.77756 0.78324 0.78252 1.19687 1.19424
1.18838 1.19449 0.87076 0.98807 1.03136 1.20614 1.01878 0.89392
1.03580 0.88552 0.88790 0.88623 0.85637 0.83185 0.79837 0.77387
0.93361 0.95885 0.89610 0.91779 0.89740 0.86710 0.94410
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.83 10.03 71.24 0.71 -0.11 16
2 C -0.19 -3.91 6.43 24.54 0.16 -3.76 16
3 S 0.30 6.10 22.28 -56.49 -1.26 4.84 16
4 C 0.01 0.38 7.00 83.27 0.58 0.96 16
5 N -0.38 -13.81 2.95 -352.66 -1.04 -14.85 16
6 C -0.05 -1.98 10.42 83.14 0.87 -1.12 16
7 C -0.19 -6.70 10.86 22.16 0.24 -6.46 16
8 C -0.17 -4.75 10.86 22.16 0.24 -4.51 16
9 C -0.02 -0.52 10.94 83.15 0.91 0.39 16
10 C -0.19 -7.49 5.87 -19.76 -0.12 -7.61 16
11 C 0.53 26.15 3.77 69.99 0.26 26.41 16
12 O -0.54 -29.93 15.98 19.42 0.31 -29.62 16
13 O -0.36 -19.23 9.50 -57.80 -0.55 -19.78 16
14 C 0.22 12.81 2.52 29.85 0.08 12.89 16
15 H 0.00 0.31 7.16 -2.38 -0.02 0.29 16
16 C -0.14 -7.59 9.33 71.98 0.67 -6.91 16
17 C -0.55 -32.59 8.90 25.60 0.23 -32.36 16
18 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16
19 C 0.02 1.24 5.30 84.66 0.45 1.69 16
20 N -0.91 -53.49 11.32 21.45 0.24 -53.25 16
21 Si 0.98 44.08 29.54 68.60 2.03 46.11 16
22 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16
23 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16
24 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16
25 C -0.07 -2.20 6.00 -19.39 -0.12 -2.31 16
26 C -0.10 -2.49 9.67 71.23 0.69 -1.80 16
27 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16
28 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16
29 H 0.10 0.81 6.64 -2.39 -0.02 0.80 16
30 H 0.13 6.57 4.79 -2.91 -0.01 6.56 16
31 H 0.15 5.06 8.06 -2.91 -0.02 5.04 16
32 H 0.18 3.44 8.06 -2.91 -0.02 3.41 16
33 H 0.21 3.53 7.89 -2.91 -0.02 3.51 16
34 H 0.05 2.44 8.14 -2.39 -0.02 2.42 16
35 H 0.02 1.14 8.14 -2.39 -0.02 1.13 16
36 H 0.09 4.88 6.07 -2.39 -0.01 4.87 16
37 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16
38 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16
39 H 0.11 1.95 6.62 -2.38 -0.02 1.93 16
40 H 0.04 1.21 7.69 -2.38 -0.02 1.19 16
Total: -1.00 -78.32 350.59 6.65 -71.67
By element:
Atomic # 1 Polarization: 18.42 SS G_CDS: 1.07 Total: 19.48 kcal
Atomic # 6 Polarization: -30.46 SS G_CDS: 5.86 Total: -24.61 kcal
Atomic # 7 Polarization: -67.30 SS G_CDS: -0.80 Total: -68.10 kcal
Atomic # 8 Polarization: -49.16 SS G_CDS: -0.24 Total: -49.40 kcal
Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal
Atomic # 16 Polarization: 6.10 SS G_CDS: -1.26 Total: 4.84 kcal
Total: -78.32 6.65 -71.67 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001356016512.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 47.480 kcal
(2) G-P(sol) polarization free energy of solvation -78.321 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.841 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.653 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.667 kcal
(6) G-S(sol) free energy of system = (1) + (5) -24.188 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds