Wall clock time and date at job start Tue Mar 31 2020 12:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 119.99915 * 2 1 4 4 H 1.48499 * 109.46872 * 269.99795 * 3 2 1 5 5 H 1.48496 * 109.47016 * 30.00018 * 3 2 1 6 6 H 1.48503 * 109.46816 * 149.99805 * 3 2 1 7 7 C 1.38730 * 119.99897 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99761 * 180.02562 * 7 2 1 9 9 S 1.76193 * 120.00340 * 359.97438 * 7 2 1 10 10 C 1.76192 * 100.00418 * 174.87982 * 9 7 2 11 11 C 1.39230 * 120.02182 * 274.42386 * 10 9 7 12 12 C 1.38128 * 120.20413 * 180.02562 * 11 10 9 13 13 C 1.38093 * 120.24488 * 359.72141 * 12 11 10 14 14 C 1.39632 * 120.03560 * 0.55612 * 13 12 11 15 15 C 1.47863 * 120.10226 * 179.72029 * 14 13 12 16 16 O 1.21551 * 119.99823 * 158.27291 * 15 14 13 17 17 N 1.34774 * 119.99766 * 338.27520 * 15 14 13 18 18 C 1.48155 * 127.83814 * 353.86794 * 17 15 14 19 19 C 1.54388 * 104.61357 * 219.60873 * 18 17 15 20 20 H 1.09004 * 117.61277 * 115.21725 * 19 18 17 21 21 C 1.52996 * 118.90070 * 272.78542 * 19 18 17 22 22 H 1.09002 * 117.44275 * 343.45593 * 21 19 18 23 23 C 1.52997 * 117.44252 * 198.75178 * 21 19 18 24 24 O 1.42906 * 109.46961 * 175.00144 * 23 21 19 25 25 C 1.53000 * 60.55606 * 91.10223 * 21 19 18 26 26 H 1.09001 * 119.53686 * 111.76715 * 25 21 19 27 27 C 1.48145 * 127.83696 * 173.89759 * 17 15 14 28 28 C 1.38836 * 120.02379 * 94.44245 * 10 9 7 29 29 H 0.96999 * 120.00313 * 0.02562 * 1 2 3 30 30 H 1.07998 * 119.89350 * 359.97438 * 11 10 9 31 31 H 1.08003 * 119.88000 * 180.02562 * 12 11 10 32 32 H 1.07992 * 119.98222 * 180.30090 * 13 12 11 33 33 H 1.08994 * 110.40163 * 100.82311 * 18 17 15 34 34 H 1.08999 * 110.40499 * 338.39550 * 18 17 15 35 35 H 1.09000 * 109.46995 * 294.99784 * 23 21 19 36 36 H 1.09000 * 109.47461 * 55.00230 * 23 21 19 37 37 H 0.96695 * 113.99930 * 179.97438 * 24 23 21 38 38 H 1.08999 * 110.40701 * 21.61162 * 27 17 15 39 39 H 1.09001 * 110.40460 * 259.17235 * 27 17 15 40 40 H 1.08007 * 120.11613 * 359.95938 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0098 -1.2014 0.0005 8 1 3.0899 -1.2014 0.0010 9 16 1.1289 -2.7274 0.0019 10 6 2.4726 -3.8566 -0.1527 11 6 2.9701 -4.1790 -1.4125 12 6 4.0230 -5.0642 -1.5381 13 6 4.5930 -5.6310 -0.4152 14 6 4.0982 -5.3193 0.8528 15 6 4.7034 -5.9301 2.0557 16 8 4.5703 -5.3974 3.1401 17 7 5.4025 -7.0774 1.9497 18 6 5.5679 -7.9335 0.7518 19 6 5.4924 -9.3779 1.2919 20 1 4.6548 -9.9954 0.9674 21 6 6.7731 -10.0473 1.7944 22 1 7.7224 -9.5974 1.5039 23 6 6.7741 -11.5733 1.9055 24 8 8.0791 -12.0230 2.2758 25 6 5.8956 -9.2694 2.7772 26 1 5.3584 -9.8063 3.5591 27 6 6.1794 -7.7690 3.0046 28 6 3.0356 -4.4258 0.9815 29 1 -0.4850 0.8400 -0.0004 30 1 2.5309 -3.7361 -2.2942 31 1 4.4051 -5.3102 -2.5178 32 1 5.4191 -6.3188 -0.5181 33 1 6.5364 -7.7520 0.2860 34 1 4.7627 -7.7511 0.0402 35 1 6.0545 -11.8829 2.6633 36 1 6.4993 -12.0078 0.9443 37 1 8.1536 -12.9829 2.3652 38 1 5.8355 -7.4627 3.9925 39 1 7.2435 -7.5619 2.8904 40 1 2.6519 -4.1773 1.9601 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363095681.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:51 Heat of formation + Delta-G solvation = -12.575096 kcal Electronic energy + Delta-G solvation = -23158.298085 eV Core-core repulsion = 19644.608271 eV Total energy + Delta-G solvation = -3513.689814 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.86141 -39.11356 -37.67719 -36.97102 -34.08019 -32.50496 -31.11109 -30.60732 -28.68782 -28.19070 -25.56661 -25.17034 -22.73386 -22.40448 -21.05078 -20.61807 -19.81810 -18.04212 -17.82970 -17.09961 -16.49037 -15.82515 -15.68029 -15.48287 -15.04118 -14.84823 -14.64903 -14.34474 -13.87304 -13.66214 -13.38820 -13.31979 -13.04219 -12.72666 -12.54671 -12.23341 -11.98174 -11.62301 -11.36560 -11.17800 -11.14308 -11.07042 -10.89967 -10.69974 -10.49325 -10.11535 -9.95168 -9.76848 -9.15432 -9.00125 -8.94116 -8.58209 -8.02884 -6.71691 -6.28440 -4.02390 1.18023 1.64576 2.73873 2.91735 2.99599 3.20777 3.21932 3.28402 3.46597 3.55120 4.04774 4.10640 4.24368 4.28908 4.57291 4.60854 4.70312 4.75717 4.87663 4.95655 5.05649 5.07644 5.09450 5.19108 5.25029 5.30033 5.47538 5.53052 5.56909 5.65993 5.72083 5.79327 5.84320 5.89318 6.12497 6.24447 6.57496 6.63508 6.92276 7.12619 7.18439 7.42362 7.58177 8.18481 8.33338 9.17515 10.78314 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.030346 B = 0.002497 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.483599 B =11210.297087 C =11501.379191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.073 3.927 3 Si 0.921 3.079 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.271 1.271 7 C -0.519 4.519 8 H 0.076 0.924 9 S -0.035 6.035 10 C -0.106 4.106 11 C -0.055 4.055 12 C -0.141 4.141 13 C -0.102 4.102 14 C -0.150 4.150 15 C 0.587 3.413 16 O -0.531 6.531 17 N -0.624 5.624 18 C 0.120 3.880 19 C -0.169 4.169 20 H 0.124 0.876 21 C -0.110 4.110 22 H 0.114 0.886 23 C 0.107 3.893 24 O -0.571 6.571 25 C -0.168 4.168 26 H 0.121 0.879 27 C 0.133 3.867 28 C -0.021 4.021 29 H 0.270 0.730 30 H 0.131 0.869 31 H 0.124 0.876 32 H 0.129 0.871 33 H 0.078 0.922 34 H 0.101 0.899 35 H 0.050 0.950 36 H 0.055 0.945 37 H 0.382 0.618 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.096 -23.410 -0.482 26.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.136 4.136 3 Si 0.747 3.253 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.666 4.666 8 H 0.094 0.906 9 S 0.199 5.801 10 C -0.216 4.216 11 C -0.076 4.076 12 C -0.161 4.161 13 C -0.120 4.120 14 C -0.155 4.155 15 C 0.378 3.622 16 O -0.408 6.408 17 N -0.359 5.359 18 C -0.003 4.003 19 C -0.188 4.188 20 H 0.141 0.859 21 C -0.129 4.129 22 H 0.132 0.868 23 C 0.030 3.970 24 O -0.377 6.377 25 C -0.187 4.187 26 H 0.139 0.861 27 C 0.010 3.990 28 C -0.042 4.042 29 H 0.079 0.921 30 H 0.149 0.851 31 H 0.142 0.858 32 H 0.147 0.853 33 H 0.096 0.904 34 H 0.119 0.881 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.229 0.771 38 H 0.109 0.891 39 H 0.093 0.907 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 11.704 -22.359 0.208 25.238 hybrid contribution 1.695 0.506 -0.170 1.777 sum 13.399 -21.853 0.038 25.634 Atomic orbital electron populations 1.69985 1.05890 1.27664 1.47076 1.25004 0.95137 0.99117 0.94360 0.86113 0.79568 0.81197 0.78418 1.20179 1.20654 1.19523 1.22837 0.94900 0.90134 1.58768 0.90601 1.83591 1.04097 0.97162 1.95230 1.22831 1.02961 1.01910 0.93917 1.22009 0.93922 0.93970 0.97665 1.21093 0.97891 0.99015 0.98108 1.21605 0.99537 0.99150 0.91755 1.19736 1.00751 1.02614 0.92356 1.18106 0.76672 0.78513 0.88869 1.90790 1.59464 1.61866 1.28641 1.49098 1.51134 1.23391 1.12237 1.22201 1.02733 0.86670 0.88649 1.23777 0.99425 0.97736 0.97862 0.85853 1.22255 0.95718 0.93394 1.01489 0.86780 1.21598 0.84500 0.92077 0.98854 1.86473 1.30972 1.27703 1.92556 1.23862 1.04890 0.96460 0.93489 0.86082 1.21712 0.95650 0.88279 0.93332 1.21872 0.91713 0.91208 0.99444 0.92067 0.85071 0.85832 0.85305 0.90409 0.88083 0.93157 0.92663 0.77057 0.89092 0.90718 0.84500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.53 13.22 55.49 0.73 -24.80 16 2 C 0.07 2.05 5.49 -17.46 -0.10 1.96 16 3 Si 0.92 21.61 29.55 -169.99 -5.02 16.59 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.52 -14.76 9.46 30.91 0.29 -14.47 16 8 H 0.08 2.15 7.79 -52.48 -0.41 1.74 16 9 S -0.04 -0.91 21.40 -107.50 -2.30 -3.22 16 10 C -0.11 -2.27 5.45 -38.99 -0.21 -2.48 16 11 C -0.05 -0.99 9.79 -39.25 -0.38 -1.38 16 12 C -0.14 -2.05 10.02 -39.68 -0.40 -2.44 16 13 C -0.10 -1.43 7.99 -39.11 -0.31 -1.74 16 14 C -0.15 -2.58 5.75 -105.00 -0.60 -3.19 16 15 C 0.59 9.95 7.73 -12.32 -0.10 9.86 16 16 O -0.53 -10.96 16.79 5.32 0.09 -10.87 16 17 N -0.62 -7.88 3.31 -170.41 -0.56 -8.45 16 18 C 0.12 1.08 4.89 -2.40 -0.01 1.06 16 19 C -0.17 -1.25 6.82 -89.22 -0.61 -1.86 16 20 H 0.12 0.78 8.14 -51.93 -0.42 0.36 16 21 C -0.11 -0.77 5.66 -90.62 -0.51 -1.28 16 22 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 23 C 0.11 0.60 7.32 37.16 0.27 0.87 16 24 O -0.57 -3.72 13.66 -35.23 -0.48 -4.21 16 25 C -0.17 -1.38 6.71 -89.22 -0.60 -1.98 16 26 H 0.12 0.92 8.12 -51.93 -0.42 0.49 16 27 C 0.13 1.40 6.90 -2.41 -0.02 1.38 16 28 C -0.02 -0.42 9.34 -38.92 -0.36 -0.79 16 29 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.13 2.31 8.06 -52.49 -0.42 1.89 16 31 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 32 H 0.13 1.37 4.81 -52.49 -0.25 1.11 16 33 H 0.08 0.58 7.85 -51.93 -0.41 0.18 16 34 H 0.10 0.90 5.70 -51.93 -0.30 0.61 16 35 H 0.05 0.24 7.94 -51.93 -0.41 -0.17 16 36 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.38 0.72 9.12 45.56 0.42 1.13 16 38 H 0.09 1.07 7.84 -51.93 -0.41 0.66 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.14 2.97 7.80 -52.48 -0.41 2.56 16 LS Contribution 352.55 15.07 5.31 5.31 Total: -1.00 -34.73 352.55 -10.16 -44.89 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -4.27 Total: 1.21 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: -3.65 Total: -16.46 kcal Atomic # 7 Polarization: -33.42 SS G_CDS: 0.17 Total: -33.25 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.39 Total: -15.07 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -0.91 SS G_CDS: -2.30 Total: -3.22 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.73 -10.16 -44.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363095681.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.313 kcal (2) G-P(sol) polarization free energy of solvation -34.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds