Wall clock time and date at job start Tue Mar 31 2020 12:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 119.99915 * 2 1 4 4 H 1.48499 * 109.46872 * 269.99795 * 3 2 1 5 5 H 1.48496 * 109.47016 * 30.00018 * 3 2 1 6 6 H 1.48503 * 109.46816 * 149.99805 * 3 2 1 7 7 C 1.38730 * 119.99897 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99761 * 180.02562 * 7 2 1 9 9 S 1.76193 * 120.00340 * 359.97438 * 7 2 1 10 10 C 1.76192 * 100.00418 * 174.87982 * 9 7 2 11 11 C 1.39230 * 120.02182 * 274.42386 * 10 9 7 12 12 C 1.38128 * 120.20413 * 180.02562 * 11 10 9 13 13 C 1.38093 * 120.24488 * 359.72141 * 12 11 10 14 14 C 1.39632 * 120.03560 * 0.55612 * 13 12 11 15 15 C 1.47863 * 120.10226 * 179.72029 * 14 13 12 16 16 O 1.21551 * 119.99823 * 158.27291 * 15 14 13 17 17 N 1.34774 * 119.99766 * 338.27520 * 15 14 13 18 18 C 1.48155 * 127.83814 * 353.86794 * 17 15 14 19 19 C 1.54388 * 104.61357 * 219.60873 * 18 17 15 20 20 H 1.09004 * 117.61277 * 115.21725 * 19 18 17 21 21 C 1.52996 * 118.90070 * 272.78542 * 19 18 17 22 22 H 1.09002 * 117.44275 * 343.45593 * 21 19 18 23 23 C 1.52997 * 117.44252 * 198.75178 * 21 19 18 24 24 O 1.42906 * 109.46961 * 175.00144 * 23 21 19 25 25 C 1.53000 * 60.55606 * 91.10223 * 21 19 18 26 26 H 1.09001 * 119.53686 * 111.76715 * 25 21 19 27 27 C 1.48145 * 127.83696 * 173.89759 * 17 15 14 28 28 C 1.38836 * 120.02379 * 94.44245 * 10 9 7 29 29 H 0.96999 * 120.00313 * 0.02562 * 1 2 3 30 30 H 1.07998 * 119.89350 * 359.97438 * 11 10 9 31 31 H 1.08003 * 119.88000 * 180.02562 * 12 11 10 32 32 H 1.07992 * 119.98222 * 180.30090 * 13 12 11 33 33 H 1.08994 * 110.40163 * 100.82311 * 18 17 15 34 34 H 1.08999 * 110.40499 * 338.39550 * 18 17 15 35 35 H 1.09000 * 109.46995 * 294.99784 * 23 21 19 36 36 H 1.09000 * 109.47461 * 55.00230 * 23 21 19 37 37 H 0.96695 * 113.99930 * 179.97438 * 24 23 21 38 38 H 1.08999 * 110.40701 * 21.61162 * 27 17 15 39 39 H 1.09001 * 110.40460 * 259.17235 * 27 17 15 40 40 H 1.08007 * 120.11613 * 359.95938 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0098 -1.2014 0.0005 8 1 3.0899 -1.2014 0.0010 9 16 1.1289 -2.7274 0.0019 10 6 2.4726 -3.8566 -0.1527 11 6 2.9701 -4.1790 -1.4125 12 6 4.0230 -5.0642 -1.5381 13 6 4.5930 -5.6310 -0.4152 14 6 4.0982 -5.3193 0.8528 15 6 4.7034 -5.9301 2.0557 16 8 4.5703 -5.3974 3.1401 17 7 5.4025 -7.0774 1.9497 18 6 5.5679 -7.9335 0.7518 19 6 5.4924 -9.3779 1.2919 20 1 4.6548 -9.9954 0.9674 21 6 6.7731 -10.0473 1.7944 22 1 7.7224 -9.5974 1.5039 23 6 6.7741 -11.5733 1.9055 24 8 8.0791 -12.0230 2.2758 25 6 5.8956 -9.2694 2.7772 26 1 5.3584 -9.8063 3.5591 27 6 6.1794 -7.7690 3.0046 28 6 3.0356 -4.4258 0.9815 29 1 -0.4850 0.8400 -0.0004 30 1 2.5309 -3.7361 -2.2942 31 1 4.4051 -5.3102 -2.5178 32 1 5.4191 -6.3188 -0.5181 33 1 6.5364 -7.7520 0.2860 34 1 4.7627 -7.7511 0.0402 35 1 6.0545 -11.8829 2.6633 36 1 6.4993 -12.0078 0.9443 37 1 8.1536 -12.9829 2.3652 38 1 5.8355 -7.4627 3.9925 39 1 7.2435 -7.5619 2.8904 40 1 2.6519 -4.1773 1.9601 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363095681.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:50 Heat of formation + Delta-G solvation = -36.778851 kcal Electronic energy + Delta-G solvation = -23159.347638 eV Core-core repulsion = 19644.608271 eV Total energy + Delta-G solvation = -3514.739367 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.82507 -40.18929 -38.97506 -37.51083 -35.00317 -34.66515 -32.38667 -31.99438 -29.51276 -28.93346 -27.75291 -26.04940 -23.90736 -23.75452 -21.63280 -21.36458 -21.00361 -19.88281 -18.52662 -18.26053 -17.71248 -16.97490 -16.94172 -16.70703 -16.25825 -16.14036 -15.70884 -15.51630 -15.06004 -14.76698 -14.64916 -14.51713 -14.01399 -13.82058 -13.65408 -13.38229 -13.26150 -13.03015 -12.97006 -12.68283 -12.53608 -12.27012 -12.09918 -11.76845 -11.40159 -11.37823 -11.22659 -10.91821 -10.71563 -10.57911 -10.11879 -9.82073 -9.71512 -8.82557 -8.40439 -6.20575 -0.19604 0.21281 1.28370 1.36420 1.43897 1.55641 1.72523 1.77698 2.22541 2.37291 2.70898 2.92338 3.05416 3.35838 3.40234 3.53569 3.73503 3.92472 3.96282 4.05024 4.13904 4.17158 4.32140 4.37195 4.39667 4.43306 4.52938 4.59215 4.62481 4.68245 4.75102 4.87607 4.94950 5.03450 5.10011 5.21545 5.27328 5.28577 5.37291 5.47838 5.83793 6.14684 6.31233 6.93434 6.94752 6.99888 8.66675 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.030346 B = 0.002497 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.483599 B =11210.297087 C =11501.379191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.020 3.980 3 Si 0.993 3.007 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.536 4.536 8 H 0.065 0.935 9 S -0.094 6.094 10 C -0.126 4.126 11 C -0.063 4.063 12 C -0.118 4.118 13 C -0.075 4.075 14 C -0.152 4.152 15 C 0.581 3.419 16 O -0.585 6.585 17 N -0.617 5.617 18 C 0.108 3.892 19 C -0.158 4.158 20 H 0.140 0.860 21 C -0.095 4.095 22 H 0.112 0.888 23 C 0.106 3.894 24 O -0.594 6.594 25 C -0.179 4.179 26 H 0.125 0.875 27 C 0.126 3.874 28 C -0.045 4.045 29 H 0.274 0.726 30 H 0.133 0.867 31 H 0.178 0.822 32 H 0.177 0.823 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.401 0.599 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.075 -25.819 -2.768 30.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.186 4.186 3 Si 0.814 3.186 4 H -0.185 1.185 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.683 4.683 8 H 0.084 0.916 9 S 0.141 5.859 10 C -0.237 4.237 11 C -0.084 4.084 12 C -0.137 4.137 13 C -0.093 4.093 14 C -0.157 4.157 15 C 0.372 3.628 16 O -0.466 6.466 17 N -0.350 5.350 18 C -0.012 4.012 19 C -0.177 4.177 20 H 0.158 0.842 21 C -0.114 4.114 22 H 0.130 0.870 23 C 0.029 3.971 24 O -0.403 6.403 25 C -0.198 4.198 26 H 0.143 0.857 27 C 0.004 3.996 28 C -0.067 4.067 29 H 0.083 0.917 30 H 0.151 0.849 31 H 0.195 0.805 32 H 0.194 0.806 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.251 0.749 38 H 0.087 0.913 39 H 0.107 0.893 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 14.704 -24.848 -2.106 28.949 hybrid contribution 0.894 1.010 0.565 1.463 sum 15.598 -23.838 -1.541 28.529 Atomic orbital electron populations 1.70102 1.07443 1.28819 1.47778 1.26003 0.96089 1.02834 0.93632 0.85040 0.77957 0.76429 0.79143 1.18536 1.19649 1.19530 1.23042 0.94572 0.91603 1.59131 0.91627 1.83468 1.08210 0.98502 1.95759 1.22470 1.02950 1.02364 0.95952 1.22096 0.95154 0.95127 0.95992 1.21578 0.95360 0.96218 1.00571 1.22123 0.99357 0.98029 0.89801 1.19821 0.99675 1.01891 0.94272 1.18092 0.77088 0.79624 0.87973 1.90759 1.61749 1.63833 1.30287 1.49150 1.49275 1.22073 1.14473 1.22552 1.04396 0.86896 0.87385 1.23792 1.00390 0.97029 0.96451 0.84203 1.22284 0.95174 0.94323 0.99596 0.87032 1.21652 0.84392 0.90957 1.00111 1.86415 1.31499 1.29711 1.92701 1.23786 1.06603 0.94973 0.94447 0.85696 1.21861 0.95878 0.89884 0.91931 1.21573 0.93854 0.93498 0.97776 0.91658 0.84912 0.80514 0.80565 0.87618 0.87406 0.92417 0.90826 0.74896 0.91254 0.89327 0.87835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.82 13.22 21.64 0.29 -54.54 16 2 C 0.02 1.14 5.49 84.84 0.47 1.61 16 3 Si 0.99 45.09 29.55 68.60 2.03 47.12 16 4 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 5 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 7 C -0.54 -31.88 9.46 67.94 0.64 -31.24 16 8 H 0.07 3.89 7.79 -2.91 -0.02 3.86 16 9 S -0.09 -5.20 21.40 -56.49 -1.21 -6.41 16 10 C -0.13 -5.65 5.45 22.65 0.12 -5.53 16 11 C -0.06 -2.23 9.79 22.48 0.22 -2.01 16 12 C -0.12 -2.91 10.02 22.21 0.22 -2.69 16 13 C -0.08 -1.81 7.99 22.57 0.18 -1.63 16 14 C -0.15 -5.15 5.75 -20.11 -0.12 -5.27 16 15 C 0.58 19.80 7.73 86.79 0.67 20.47 16 16 O -0.59 -25.54 16.79 -3.88 -0.07 -25.61 16 17 N -0.62 -14.51 3.31 -811.32 -2.69 -17.20 16 18 C 0.11 1.48 4.89 86.53 0.42 1.90 16 19 C -0.16 -1.71 6.82 -9.89 -0.07 -1.77 16 20 H 0.14 1.13 8.14 -2.39 -0.02 1.11 16 21 C -0.10 -0.98 5.66 -10.80 -0.06 -1.04 16 22 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 23 C 0.11 0.80 7.32 71.98 0.53 1.32 16 24 O -0.59 -5.95 13.66 -148.98 -2.04 -7.98 16 25 C -0.18 -2.51 6.71 -9.89 -0.07 -2.58 16 26 H 0.13 1.67 8.12 -2.39 -0.02 1.65 16 27 C 0.13 2.52 6.90 86.54 0.60 3.11 16 28 C -0.05 -1.95 9.34 22.70 0.21 -1.74 16 29 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 30 H 0.13 4.60 8.06 -2.91 -0.02 4.58 16 31 H 0.18 2.63 8.06 -2.91 -0.02 2.61 16 32 H 0.18 2.62 4.81 -2.91 -0.01 2.61 16 33 H 0.11 0.96 7.85 -2.39 -0.02 0.94 16 34 H 0.11 1.36 5.70 -2.39 -0.01 1.35 16 35 H 0.06 0.36 7.94 -2.39 -0.02 0.34 16 36 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 37 H 0.40 0.37 9.12 -74.06 -0.68 -0.31 16 38 H 0.07 1.68 7.84 -2.39 -0.02 1.66 16 39 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.10 5.02 7.80 -2.91 -0.02 5.00 16 Total: -1.00 -82.34 352.55 0.69 -81.65 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: 0.40 Total: 10.04 kcal Atomic # 6 Polarization: -31.04 SS G_CDS: 3.97 Total: -27.07 kcal Atomic # 7 Polarization: -69.33 SS G_CDS: -2.40 Total: -71.74 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -2.10 Total: -33.59 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Atomic # 16 Polarization: -5.20 SS G_CDS: -1.21 Total: -6.41 kcal Total: -82.34 0.69 -81.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363095681.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.867 kcal (2) G-P(sol) polarization free energy of solvation -82.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds