Wall clock time and date at job start Tue Mar 31 2020 13:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.53975 * 2 1 4 4 C 1.53598 * 109.60962 * 120.36316 * 2 1 3 5 5 C 1.53234 * 109.35549 * 178.43239 * 4 2 1 6 6 C 1.51323 * 108.64873 * 303.69652 * 5 4 2 7 7 O 1.20769 * 121.01769 * 232.61590 * 6 5 4 8 8 C 1.51488 * 117.95982 * 52.59964 * 6 5 4 9 9 N 1.46871 * 109.50745 * 239.89566 * 2 1 3 10 10 C 1.34779 * 120.71345 * 2.96798 * 9 2 1 11 11 O 1.21553 * 119.99667 * 3.92367 * 10 9 2 12 12 C 1.47855 * 119.99989 * 183.92087 * 10 9 2 13 13 C 1.39670 * 120.10577 * 326.35972 * 12 10 9 14 14 C 1.38042 * 120.04304 * 180.02562 * 13 12 10 15 15 C 1.38175 * 120.24368 * 0.02636 * 14 13 12 16 16 C 1.39193 * 120.20110 * 0.22808 * 15 14 13 17 17 S 1.76193 * 120.02034 * 179.72614 * 16 15 14 18 18 C 1.76198 * 100.00228 * 274.41503 * 17 16 15 19 19 H 1.08003 * 120.00170 * 354.86450 * 18 17 16 20 20 C 1.38725 * 120.00471 * 174.86194 * 18 17 16 21 21 N 1.31635 * 119.99694 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00658 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47282 * 89.99740 * 22 20 18 24 24 H 1.48499 * 109.47427 * 210.00156 * 22 20 18 25 25 H 1.48502 * 109.46723 * 330.00050 * 22 20 18 26 26 C 1.38880 * 119.95387 * 359.49332 * 16 15 14 27 27 H 1.08999 * 109.46851 * 180.10251 * 1 2 3 28 28 H 1.09006 * 109.47246 * 300.10424 * 1 2 3 29 29 H 1.09001 * 109.46933 * 60.10020 * 1 2 3 30 30 H 1.09002 * 109.61592 * 58.40284 * 4 2 1 31 31 H 1.08997 * 109.40726 * 298.33488 * 4 2 1 32 32 H 1.08998 * 109.60153 * 183.94461 * 5 4 2 33 33 H 1.08999 * 109.60880 * 63.44629 * 5 4 2 34 34 H 1.09002 * 109.82770 * 194.30827 * 8 6 5 35 35 H 1.08998 * 109.88028 * 73.40152 * 8 6 5 36 36 H 1.08005 * 119.97719 * 359.97438 * 13 12 10 37 37 H 1.08003 * 119.87699 * 179.97438 * 14 13 12 38 38 H 1.08000 * 119.90263 * 179.97438 * 15 14 13 39 39 H 0.96995 * 119.99715 * 179.97438 * 21 20 18 40 40 H 1.08001 * 120.11385 * 180.25223 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0273 0.0000 4 6 2.0455 -0.7314 1.2484 5 6 3.5773 -0.7622 1.2227 6 6 4.0266 -1.4105 -0.0686 7 8 4.8028 -2.3357 -0.0633 8 6 3.4727 -0.8635 -1.3682 9 7 2.0204 -0.6944 -1.1977 10 6 1.1595 -1.1618 -2.1234 11 8 -0.0316 -0.9484 -2.0082 12 6 1.6640 -1.9339 -3.2790 13 6 2.9108 -1.6332 -3.8320 14 6 3.3803 -2.3545 -4.9112 15 6 2.6206 -3.3754 -5.4496 16 6 1.3743 -3.6802 -4.9098 17 16 0.4063 -4.9782 -5.6046 18 6 -0.4093 -4.0957 -6.8932 19 1 -0.2783 -3.0274 -6.9829 20 6 -1.2198 -4.7730 -7.7925 21 7 -1.3799 -6.0750 -7.6830 22 14 -2.0840 -3.8376 -9.1591 23 1 -1.2106 -3.7957 -10.3594 24 1 -3.3582 -4.5208 -9.4977 25 1 -2.3700 -2.4524 -8.7066 26 6 0.8964 -2.9637 -3.8204 27 1 -0.3633 -1.0277 0.0018 28 1 -0.3634 0.5155 0.8891 29 1 -0.3633 0.5123 -0.8909 30 1 1.6615 -1.7515 1.2596 31 1 1.7074 -0.2059 2.1415 32 1 3.9457 -1.3405 2.0700 33 1 3.9645 0.2554 1.2753 34 1 3.6706 -1.5650 -2.1787 35 1 3.9333 0.0988 -1.5916 36 1 3.5077 -0.8352 -3.4154 37 1 4.3447 -2.1195 -5.3370 38 1 2.9931 -3.9360 -6.2942 39 1 -1.9469 -6.5485 -8.3116 40 1 -0.0685 -3.2007 -3.3970 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363801078.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:30 Heat of formation + Delta-G solvation = -13.586998 kcal Electronic energy + Delta-G solvation = -24133.126097 eV Core-core repulsion = 20619.392404 eV Total energy + Delta-G solvation = -3513.733693 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.16362 -39.42866 -38.22696 -36.57303 -33.85439 -32.51631 -31.61773 -30.71852 -30.30301 -27.59651 -25.58611 -24.96834 -23.78325 -22.80973 -21.65997 -20.37572 -19.45817 -18.00074 -17.16099 -16.72041 -16.40998 -15.95848 -15.55235 -15.37280 -15.10988 -14.85775 -14.79892 -14.38353 -13.97761 -13.65273 -13.41187 -13.24404 -12.97896 -12.77095 -12.57931 -12.45187 -12.13446 -11.80187 -11.61327 -11.44009 -11.37551 -11.14667 -11.12010 -11.07271 -10.73032 -10.10729 -9.94255 -9.26426 -9.16493 -8.93192 -8.83708 -8.59041 -8.03670 -6.73273 -6.29625 -4.03914 1.15931 1.45781 1.60257 2.65846 2.83583 3.19825 3.20137 3.27443 3.44910 3.60003 3.97676 4.20933 4.24819 4.33956 4.41771 4.55819 4.80887 4.84793 4.99316 5.02109 5.06642 5.12284 5.17522 5.25934 5.32733 5.46033 5.54105 5.57938 5.65596 5.68809 5.81381 5.91176 6.01028 6.13161 6.20635 6.49134 6.50705 6.59103 6.86816 6.97693 7.13347 7.20797 7.56929 8.10137 8.32032 9.16291 10.77129 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.020682 B = 0.003327 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.534058 B = 8415.089374 C = 9049.197507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.140 3.860 3 H 0.078 0.922 4 C -0.127 4.127 5 C -0.171 4.171 6 C 0.351 3.649 7 O -0.441 6.441 8 C 0.031 3.969 9 N -0.606 5.606 10 C 0.571 3.429 11 O -0.516 6.516 12 C -0.154 4.154 13 C -0.112 4.112 14 C -0.136 4.136 15 C -0.056 4.056 16 C -0.102 4.102 17 S -0.034 6.034 18 C -0.520 4.520 19 H 0.076 0.924 20 C 0.073 3.927 21 N -0.871 5.871 22 Si 0.921 3.079 23 H -0.276 1.276 24 H -0.281 1.281 25 H -0.270 1.270 26 C -0.023 4.023 27 H 0.068 0.932 28 H 0.045 0.955 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.142 0.858 35 H 0.103 0.897 36 H 0.133 0.867 37 H 0.125 0.875 38 H 0.132 0.868 39 H 0.270 0.730 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.854 13.764 15.640 23.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.037 3.963 3 H 0.096 0.904 4 C -0.165 4.165 5 C -0.209 4.209 6 C 0.224 3.776 7 O -0.312 6.312 8 C -0.092 4.092 9 N -0.343 5.343 10 C 0.362 3.638 11 O -0.392 6.392 12 C -0.159 4.159 13 C -0.131 4.131 14 C -0.156 4.156 15 C -0.077 4.077 16 C -0.213 4.213 17 S 0.200 5.800 18 C -0.667 4.667 19 H 0.094 0.906 20 C -0.136 4.136 21 N -0.506 5.506 22 Si 0.747 3.253 23 H -0.202 1.202 24 H -0.207 1.207 25 H -0.195 1.195 26 C -0.044 4.044 27 H 0.087 0.913 28 H 0.064 0.936 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.119 0.881 34 H 0.159 0.841 35 H 0.121 0.879 36 H 0.151 0.849 37 H 0.143 0.857 38 H 0.150 0.850 39 H 0.080 0.920 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 10.397 12.044 15.909 22.500 hybrid contribution -0.226 1.958 -1.151 2.282 sum 10.171 14.002 14.758 22.744 Atomic orbital electron populations 1.22273 0.91722 1.03936 1.01906 1.21470 0.96683 0.95050 0.83053 0.90368 1.22114 0.93115 1.02593 0.98704 1.22349 0.97836 1.03286 0.97415 1.25231 0.77834 0.81584 0.92935 1.90462 1.27767 1.23385 1.89547 1.23464 0.81751 1.04605 0.99351 1.47954 1.05162 1.58733 1.22422 1.18460 0.85604 0.78049 0.81734 1.90843 1.15578 1.56894 1.75867 1.19858 0.96694 1.00540 0.98769 1.21533 0.94497 1.00239 0.96799 1.21110 1.00416 0.97230 0.96866 1.22012 0.93058 0.94935 0.97738 1.22855 0.98176 1.02421 0.97805 1.83620 1.49654 1.08423 1.38297 1.22838 1.32886 0.96098 1.14888 0.90571 1.25001 0.95995 0.95109 0.97456 1.69991 1.36979 1.07046 1.36581 0.86112 0.78710 0.79693 0.80782 1.20170 1.20654 1.19498 1.21812 0.97962 0.91170 0.93501 0.91308 0.93614 0.89630 0.90702 0.89276 0.88985 0.88097 0.84054 0.87891 0.84942 0.85689 0.84998 0.92048 0.84626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 7.60 37.16 0.28 -1.23 16 2 C 0.14 1.23 3.41 -67.42 -0.23 1.00 16 3 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 4 C -0.13 -0.89 5.40 -26.30 -0.14 -1.04 16 5 C -0.17 -1.13 6.14 -27.46 -0.17 -1.29 16 6 C 0.35 3.40 6.87 -28.34 -0.19 3.20 16 7 O -0.44 -5.88 17.90 5.99 0.11 -5.77 16 8 C 0.03 0.28 5.03 -4.42 -0.02 0.26 16 9 N -0.61 -6.73 2.97 -166.91 -0.50 -7.22 16 10 C 0.57 8.64 7.34 -12.32 -0.09 8.55 16 11 O -0.52 -9.09 12.21 5.32 0.06 -9.03 16 12 C -0.15 -2.52 5.52 -105.00 -0.58 -3.10 16 13 C -0.11 -1.53 7.43 -39.12 -0.29 -1.82 16 14 C -0.14 -1.97 10.02 -39.68 -0.40 -2.36 16 15 C -0.06 -1.02 9.79 -39.25 -0.38 -1.41 16 16 C -0.10 -2.17 5.45 -38.99 -0.21 -2.38 16 17 S -0.03 -0.89 21.41 -107.50 -2.30 -3.19 16 18 C -0.52 -14.64 9.46 30.91 0.29 -14.35 16 19 H 0.08 2.14 7.79 -52.48 -0.41 1.73 16 20 C 0.07 2.05 5.49 -17.46 -0.10 1.96 16 21 N -0.87 -25.39 13.22 55.49 0.73 -24.65 16 22 Si 0.92 21.41 29.55 -169.99 -5.02 16.38 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 C -0.02 -0.45 9.35 -38.92 -0.36 -0.81 16 27 H 0.07 0.89 7.07 -51.93 -0.37 0.53 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 1.11 6.39 -51.93 -0.33 0.78 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.14 1.47 3.82 -51.93 -0.20 1.28 16 35 H 0.10 0.60 8.08 -51.93 -0.42 0.18 16 36 H 0.13 1.31 5.27 -52.48 -0.28 1.04 16 37 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 38 H 0.13 2.33 8.06 -52.49 -0.42 1.90 16 39 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.14 2.80 7.98 -52.49 -0.42 2.39 16 LS Contribution 342.56 15.07 5.16 5.16 Total: -1.00 -33.29 342.56 -9.29 -42.58 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -4.94 Total: 0.56 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: -2.60 Total: -14.83 kcal Atomic # 7 Polarization: -32.11 SS G_CDS: 0.24 Total: -31.88 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: 0.17 Total: -14.80 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -0.89 SS G_CDS: -2.30 Total: -3.19 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.29 -9.29 -42.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363801078.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.995 kcal (2) G-P(sol) polarization free energy of solvation -33.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds