Wall clock time and date at job start Tue Mar 31 2020 13:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.53975 * 2 1 4 4 C 1.53598 * 109.60962 * 120.36316 * 2 1 3 5 5 C 1.53234 * 109.35549 * 178.43239 * 4 2 1 6 6 C 1.51323 * 108.64873 * 303.69652 * 5 4 2 7 7 O 1.20769 * 121.01769 * 232.61590 * 6 5 4 8 8 C 1.51488 * 117.95982 * 52.59964 * 6 5 4 9 9 N 1.46871 * 109.50745 * 239.89566 * 2 1 3 10 10 C 1.34779 * 120.71345 * 2.96798 * 9 2 1 11 11 O 1.21553 * 119.99667 * 3.92367 * 10 9 2 12 12 C 1.47855 * 119.99989 * 183.92087 * 10 9 2 13 13 C 1.39670 * 120.10577 * 326.35972 * 12 10 9 14 14 C 1.38042 * 120.04304 * 180.02562 * 13 12 10 15 15 C 1.38175 * 120.24368 * 0.02636 * 14 13 12 16 16 C 1.39193 * 120.20110 * 0.22808 * 15 14 13 17 17 S 1.76193 * 120.02034 * 179.72614 * 16 15 14 18 18 C 1.76198 * 100.00228 * 274.41503 * 17 16 15 19 19 H 1.08003 * 120.00170 * 354.86450 * 18 17 16 20 20 C 1.38725 * 120.00471 * 174.86194 * 18 17 16 21 21 N 1.31635 * 119.99694 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00658 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47282 * 89.99740 * 22 20 18 24 24 H 1.48499 * 109.47427 * 210.00156 * 22 20 18 25 25 H 1.48502 * 109.46723 * 330.00050 * 22 20 18 26 26 C 1.38880 * 119.95387 * 359.49332 * 16 15 14 27 27 H 1.08999 * 109.46851 * 180.10251 * 1 2 3 28 28 H 1.09006 * 109.47246 * 300.10424 * 1 2 3 29 29 H 1.09001 * 109.46933 * 60.10020 * 1 2 3 30 30 H 1.09002 * 109.61592 * 58.40284 * 4 2 1 31 31 H 1.08997 * 109.40726 * 298.33488 * 4 2 1 32 32 H 1.08998 * 109.60153 * 183.94461 * 5 4 2 33 33 H 1.08999 * 109.60880 * 63.44629 * 5 4 2 34 34 H 1.09002 * 109.82770 * 194.30827 * 8 6 5 35 35 H 1.08998 * 109.88028 * 73.40152 * 8 6 5 36 36 H 1.08005 * 119.97719 * 359.97438 * 13 12 10 37 37 H 1.08003 * 119.87699 * 179.97438 * 14 13 12 38 38 H 1.08000 * 119.90263 * 179.97438 * 15 14 13 39 39 H 0.96995 * 119.99715 * 179.97438 * 21 20 18 40 40 H 1.08001 * 120.11385 * 180.25223 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0273 0.0000 4 6 2.0455 -0.7314 1.2484 5 6 3.5773 -0.7622 1.2227 6 6 4.0266 -1.4105 -0.0686 7 8 4.8028 -2.3357 -0.0633 8 6 3.4727 -0.8635 -1.3682 9 7 2.0204 -0.6944 -1.1977 10 6 1.1595 -1.1618 -2.1234 11 8 -0.0316 -0.9484 -2.0082 12 6 1.6640 -1.9339 -3.2790 13 6 2.9108 -1.6332 -3.8320 14 6 3.3803 -2.3545 -4.9112 15 6 2.6206 -3.3754 -5.4496 16 6 1.3743 -3.6802 -4.9098 17 16 0.4063 -4.9782 -5.6046 18 6 -0.4093 -4.0957 -6.8932 19 1 -0.2783 -3.0274 -6.9829 20 6 -1.2198 -4.7730 -7.7925 21 7 -1.3799 -6.0750 -7.6830 22 14 -2.0840 -3.8376 -9.1591 23 1 -1.2106 -3.7957 -10.3594 24 1 -3.3582 -4.5208 -9.4977 25 1 -2.3700 -2.4524 -8.7066 26 6 0.8964 -2.9637 -3.8204 27 1 -0.3633 -1.0277 0.0018 28 1 -0.3634 0.5155 0.8891 29 1 -0.3633 0.5123 -0.8909 30 1 1.6615 -1.7515 1.2596 31 1 1.7074 -0.2059 2.1415 32 1 3.9457 -1.3405 2.0700 33 1 3.9645 0.2554 1.2753 34 1 3.6706 -1.5650 -2.1787 35 1 3.9333 0.0988 -1.5916 36 1 3.5077 -0.8352 -3.4154 37 1 4.3447 -2.1195 -5.3370 38 1 2.9931 -3.9360 -6.2942 39 1 -1.9469 -6.5485 -8.3116 40 1 -0.0685 -3.2007 -3.3970 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363801078.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:29 Heat of formation + Delta-G solvation = -34.509233 kcal Electronic energy + Delta-G solvation = -24134.033353 eV Core-core repulsion = 20619.392404 eV Total energy + Delta-G solvation = -3514.640949 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.14138 -40.38225 -39.46786 -37.53734 -34.76191 -34.66625 -32.44689 -32.05406 -31.46829 -28.46040 -27.76441 -25.75595 -24.83209 -24.07884 -22.68303 -21.36184 -20.41712 -19.79358 -18.44805 -17.79271 -17.44008 -16.94799 -16.88694 -16.60062 -16.30753 -16.09734 -15.82968 -15.54359 -15.35492 -14.84730 -14.64296 -14.42280 -14.06073 -13.92408 -13.57586 -13.39504 -13.27211 -13.15740 -12.97555 -12.80502 -12.59648 -12.46355 -12.42266 -12.14385 -12.08386 -11.76987 -11.23375 -10.96888 -10.75733 -10.23176 -10.00693 -9.69795 -9.60432 -8.83539 -8.40599 -6.21361 -0.16664 0.19161 0.72589 1.28153 1.36677 1.43823 1.54624 1.73908 1.82151 2.22090 2.65351 2.92299 2.93538 3.30791 3.39479 3.59679 3.78943 3.86063 3.89812 3.95286 4.14443 4.25123 4.30627 4.41893 4.42868 4.49147 4.52603 4.64591 4.76867 4.87462 4.88060 5.00569 5.01358 5.11946 5.25000 5.26200 5.31871 5.36826 5.46260 5.62671 5.81154 6.05061 6.14435 6.38155 6.99590 6.99944 8.66578 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.020682 B = 0.003327 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.534058 B = 8415.089374 C = 9049.197507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.136 3.864 3 H 0.119 0.881 4 C -0.120 4.120 5 C -0.163 4.163 6 C 0.353 3.647 7 O -0.485 6.485 8 C 0.025 3.975 9 N -0.596 5.596 10 C 0.566 3.434 11 O -0.552 6.552 12 C -0.157 4.157 13 C -0.088 4.088 14 C -0.120 4.120 15 C -0.069 4.069 16 C -0.125 4.125 17 S -0.096 6.096 18 C -0.536 4.536 19 H 0.066 0.934 20 C 0.021 3.979 21 N -0.906 5.906 22 Si 0.993 3.007 23 H -0.262 1.262 24 H -0.272 1.272 25 H -0.269 1.269 26 C -0.047 4.047 27 H 0.033 0.967 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.047 0.953 31 H 0.121 0.879 32 H 0.093 0.907 33 H 0.141 0.859 34 H 0.127 0.873 35 H 0.155 0.845 36 H 0.185 0.815 37 H 0.175 0.825 38 H 0.130 0.870 39 H 0.274 0.726 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.526 17.762 16.765 27.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.035 3.965 3 H 0.137 0.863 4 C -0.159 4.159 5 C -0.200 4.200 6 C 0.229 3.771 7 O -0.359 6.359 8 C -0.097 4.097 9 N -0.330 5.330 10 C 0.356 3.644 11 O -0.432 6.432 12 C -0.162 4.162 13 C -0.105 4.105 14 C -0.139 4.139 15 C -0.089 4.089 16 C -0.236 4.236 17 S 0.139 5.861 18 C -0.684 4.684 19 H 0.084 0.916 20 C -0.185 4.185 21 N -0.542 5.542 22 Si 0.815 3.185 23 H -0.187 1.187 24 H -0.196 1.196 25 H -0.193 1.193 26 C -0.069 4.069 27 H 0.052 0.948 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.139 0.861 32 H 0.112 0.888 33 H 0.159 0.841 34 H 0.145 0.855 35 H 0.172 0.828 36 H 0.202 0.798 37 H 0.192 0.808 38 H 0.148 0.852 39 H 0.083 0.917 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 13.102 16.055 17.070 26.848 hybrid contribution -0.960 0.806 -1.302 1.807 sum 12.142 16.861 15.769 26.084 Atomic orbital electron populations 1.22119 0.93672 1.01710 1.01949 1.21783 0.95206 0.97028 0.82498 0.86300 1.22083 0.93496 1.01286 0.99003 1.22378 0.96964 1.05190 0.95488 1.25689 0.76561 0.80525 0.94354 1.90469 1.30109 1.25209 1.90124 1.23689 0.80289 1.06794 0.98907 1.47970 1.05732 1.57359 1.21980 1.18337 0.85569 0.78247 0.82259 1.90853 1.17188 1.58393 1.76740 1.20073 0.97445 0.99330 0.99337 1.22142 0.93037 1.00217 0.95144 1.21583 1.01412 0.94862 0.96033 1.22066 0.92332 0.96432 0.98113 1.22490 0.99237 1.02589 0.99327 1.83498 1.51606 1.12295 1.38738 1.23044 1.33871 0.95847 1.15592 0.91553 1.26009 0.96462 0.96051 0.99949 1.70112 1.37772 1.08647 1.37713 0.85030 0.77809 0.78086 0.77597 1.18654 1.19632 1.19315 1.21542 0.97886 0.93303 0.94177 0.94761 0.90767 0.92260 0.93394 0.86096 0.88793 0.84092 0.85544 0.82777 0.79780 0.80786 0.85198 0.91657 0.87604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 7.60 71.98 0.55 -2.25 16 2 C 0.14 1.90 3.41 45.12 0.15 2.05 16 3 H 0.12 0.85 8.14 -2.38 -0.02 0.83 16 4 C -0.12 -1.26 5.40 30.87 0.17 -1.09 16 5 C -0.16 -1.38 6.14 30.12 0.18 -1.20 16 6 C 0.35 5.56 6.87 29.55 0.20 5.76 16 7 O -0.49 -11.95 17.90 -1.48 -0.03 -11.98 16 8 C 0.02 0.34 5.03 85.75 0.43 0.77 16 9 N -0.60 -11.52 2.97 -800.27 -2.38 -13.90 16 10 C 0.57 16.92 7.34 86.79 0.64 17.55 16 11 O -0.55 -20.34 12.21 -3.88 -0.05 -20.38 16 12 C -0.16 -5.11 5.52 -20.11 -0.11 -5.22 16 13 C -0.09 -2.11 7.43 22.57 0.17 -1.94 16 14 C -0.12 -3.08 10.02 22.21 0.22 -2.86 16 15 C -0.07 -2.50 9.79 22.48 0.22 -2.28 16 16 C -0.13 -5.65 5.45 22.65 0.12 -5.52 16 17 S -0.10 -5.34 21.41 -56.49 -1.21 -6.54 16 18 C -0.54 -31.87 9.46 67.94 0.64 -31.23 16 19 H 0.07 3.92 7.79 -2.91 -0.02 3.90 16 20 C 0.02 1.19 5.49 84.84 0.47 1.65 16 21 N -0.91 -54.95 13.22 21.64 0.29 -54.67 16 22 Si 0.99 44.89 29.55 68.60 2.03 46.91 16 23 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 24 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 25 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 26 C -0.05 -2.00 9.35 22.70 0.21 -1.79 16 27 H 0.03 0.92 7.07 -2.39 -0.02 0.90 16 28 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 29 H 0.06 1.54 6.39 -2.39 -0.02 1.52 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.14 0.17 8.14 -2.39 -0.02 0.15 16 34 H 0.13 2.11 3.82 -2.39 -0.01 2.10 16 35 H 0.16 0.64 8.08 -2.39 -0.02 0.62 16 36 H 0.19 2.54 5.27 -2.91 -0.02 2.53 16 37 H 0.17 2.86 8.06 -2.91 -0.02 2.83 16 38 H 0.13 4.69 8.06 -2.91 -0.02 4.67 16 39 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 40 H 0.11 4.94 7.98 -2.91 -0.02 4.92 16 Total: -1.00 -82.07 342.56 3.99 -78.09 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: 1.06 Total: 10.05 kcal Atomic # 6 Polarization: -31.85 SS G_CDS: 4.27 Total: -27.58 kcal Atomic # 7 Polarization: -66.48 SS G_CDS: -2.09 Total: -68.57 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -0.07 Total: -32.36 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Atomic # 16 Polarization: -5.34 SS G_CDS: -1.21 Total: -6.54 kcal Total: -82.07 3.99 -78.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363801078.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.578 kcal (2) G-P(sol) polarization free energy of solvation -82.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds