Wall clock time and date at job start Tue Mar 31 2020 12:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35147 * 126.44120 * 2 1 4 4 O 1.33932 * 108.77669 * 179.97438 * 3 2 1 5 5 C 1.34920 * 109.37959 * 359.97438 * 4 3 2 6 6 C 1.46580 * 125.98463 * 180.02562 * 5 4 3 7 7 O 1.21697 * 119.99830 * 180.02562 * 6 5 4 8 8 N 1.34770 * 120.00403 * 0.02606 * 6 5 4 9 9 C 1.38331 * 120.00378 * 184.52606 * 8 6 5 10 10 C 1.39289 * 126.43813 * 258.13885 * 9 8 6 11 11 C 1.46713 * 126.51914 * 0.03277 * 10 9 8 12 12 O 1.21599 * 120.00195 * 0.26325 * 11 10 9 13 13 O 1.34832 * 120.00189 * 180.25756 * 11 10 9 14 14 C 1.41487 * 106.96064 * 180.23456 * 10 9 8 15 15 N 1.30295 * 108.17597 * 359.76440 * 14 10 9 16 16 N 1.34797 * 126.43791 * 77.96638 * 9 8 6 17 17 C 1.46499 * 125.74405 * 0.02754 * 16 9 8 18 18 C 1.50699 * 109.47087 * 274.24353 * 17 16 9 19 19 H 1.08002 * 120.00057 * 0.02562 * 18 17 16 20 20 C 1.37879 * 120.00334 * 179.72067 * 18 17 16 21 21 N 1.31510 * 119.99519 * 0.28454 * 20 18 17 22 22 Si 1.86800 * 120.00407 * 180.27545 * 20 18 17 23 23 H 1.48500 * 109.46500 * 90.00310 * 22 20 18 24 24 H 1.48499 * 109.47246 * 210.00518 * 22 20 18 25 25 H 1.48497 * 109.47047 * 330.00888 * 22 20 18 26 26 C 1.36591 * 108.01973 * 0.26340 * 5 4 3 27 27 H 1.08999 * 109.46886 * 90.03230 * 1 2 3 28 28 H 1.09004 * 109.46877 * 210.01997 * 1 2 3 29 29 H 1.08998 * 109.47560 * 330.02473 * 1 2 3 30 30 H 1.08005 * 125.60593 * 359.97438 * 3 2 1 31 31 H 0.97000 * 120.00325 * 4.52371 * 8 6 5 32 32 H 0.96694 * 117.00242 * 180.02562 * 13 11 10 33 33 H 1.07999 * 125.90360 * 179.78545 * 14 10 9 34 34 H 1.09000 * 109.47213 * 154.24836 * 17 16 9 35 35 H 1.08995 * 109.46967 * 34.24204 * 17 16 9 36 36 H 0.97000 * 120.00132 * 179.97438 * 21 20 18 37 37 H 1.07998 * 126.64420 * 179.73500 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0872 0.0000 4 8 3.5859 0.6808 0.0006 5 6 3.6263 -0.6678 0.0015 6 6 4.8376 -1.4932 0.0029 7 8 4.7470 -2.7068 0.0032 8 7 6.0518 -0.9082 0.0038 9 6 7.1934 -1.6837 -0.0894 10 6 8.0425 -2.0352 0.9573 11 6 7.8956 -1.6540 2.3664 12 8 6.9551 -0.9667 2.7154 13 8 8.8033 -2.0658 3.2744 14 6 9.0763 -2.8259 0.4023 15 7 8.8574 -2.9416 -0.8769 16 7 7.6913 -2.2441 -1.2097 17 6 7.1123 -2.1356 -2.5510 18 6 6.0641 -3.2029 -2.7335 19 1 5.8503 -3.8927 -1.9305 20 6 5.3736 -3.2948 -3.9234 21 7 5.6336 -2.4546 -4.9010 22 14 4.0689 -4.6129 -4.1468 23 1 2.7517 -4.0844 -3.7100 24 1 3.9968 -5.0003 -5.5785 25 1 4.4211 -5.8015 -3.3294 26 6 2.3406 -1.1290 -0.0044 27 1 -0.3633 -0.0006 -1.0277 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3634 0.8902 0.5134 30 1 1.9768 2.1147 -0.0004 31 1 6.1252 0.0568 0.0699 32 1 8.6641 -1.7898 4.1906 33 1 9.9035 -3.2588 0.9453 34 1 7.8965 -2.2653 -3.2969 35 1 6.6554 -1.1534 -2.6711 36 1 5.1481 -2.5194 -5.7383 37 1 2.0265 -2.1623 -0.0094 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574180196.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:49 Heat of formation + Delta-G solvation = -33.086952 kcal Electronic energy + Delta-G solvation = -26870.992230 eV Core-core repulsion = 22810.119741 eV Total energy + Delta-G solvation = -4060.872489 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.105 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.61287 -41.18026 -39.30618 -38.81854 -35.70042 -34.74962 -34.06494 -33.78781 -31.76644 -30.62927 -29.17852 -27.57351 -27.19850 -24.49658 -23.43916 -22.71163 -21.06035 -20.70344 -20.28450 -19.51843 -18.04534 -17.64877 -17.22588 -16.71843 -16.27342 -16.19722 -15.91742 -15.24514 -14.85814 -14.48623 -14.24357 -13.90708 -13.64703 -13.54752 -13.30681 -13.15392 -12.99969 -12.88938 -12.59640 -12.31317 -11.82661 -11.74082 -11.27857 -11.10240 -11.00799 -10.80469 -10.34003 -10.19128 -10.00471 -9.85878 -9.62970 -9.39934 -8.79448 -8.66245 -8.50667 -8.22249 -6.29579 -4.35020 1.19535 1.63280 2.36769 2.50041 2.69220 2.89050 3.23880 3.28894 3.36007 3.39344 3.42498 3.54016 3.74883 4.31698 4.69973 4.79172 4.94981 5.04051 5.16032 5.34789 5.43003 5.54722 5.64302 5.67748 5.76749 5.94720 6.00797 6.14993 6.26655 6.44658 6.65965 6.75110 6.79213 6.88025 7.00218 7.43409 7.51185 7.72764 7.77656 8.11488 8.29695 8.33121 8.74644 9.32119 10.79067 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.008284 B = 0.006948 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3379.191364 B = 4028.865940 C = 6674.606874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.194 4.194 3 C -0.013 4.013 4 O -0.161 6.161 5 C -0.057 4.057 6 C 0.621 3.379 7 O -0.474 6.474 8 N -0.647 5.647 9 C 0.383 3.617 10 C -0.303 4.303 11 C 0.565 3.435 12 O -0.533 6.533 13 O -0.516 6.516 14 C 0.089 3.911 15 N -0.278 5.278 16 N -0.299 5.299 17 C 0.248 3.752 18 C -0.532 4.532 19 H 0.076 0.924 20 C 0.068 3.932 21 N -0.894 5.894 22 Si 0.907 3.093 23 H -0.277 1.277 24 H -0.284 1.284 25 H -0.270 1.270 26 C -0.116 4.116 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.208 0.792 31 H 0.420 0.580 32 H 0.406 0.594 33 H 0.192 0.808 34 H 0.064 0.936 35 H 0.052 0.948 36 H 0.268 0.732 37 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.332 7.993 11.664 14.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.196 4.196 3 C -0.082 4.082 4 O -0.056 6.056 5 C -0.109 4.109 6 C 0.408 3.592 7 O -0.345 6.345 8 N -0.300 5.300 9 C 0.153 3.847 10 C -0.319 4.319 11 C 0.412 3.588 12 O -0.424 6.424 13 O -0.327 6.327 14 C -0.097 4.097 15 N -0.099 5.099 16 N -0.078 5.078 17 C 0.131 3.869 18 C -0.570 4.570 19 H 0.094 0.906 20 C -0.135 4.135 21 N -0.532 5.532 22 Si 0.734 3.266 23 H -0.203 1.203 24 H -0.210 1.210 25 H -0.194 1.194 26 C -0.136 4.136 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.224 0.776 31 H 0.259 0.741 32 H 0.263 0.737 33 H 0.209 0.791 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -3.025 6.877 9.839 12.379 hybrid contribution -1.241 0.354 1.000 1.633 sum -4.266 7.231 10.839 13.710 Atomic orbital electron populations 1.20163 0.88742 1.02620 1.02321 1.20443 0.97614 0.92403 1.09100 1.24121 0.80004 0.99885 1.04214 1.84048 1.29313 1.21683 1.70580 1.21767 0.95644 0.80365 1.13169 1.16343 0.80405 0.86481 0.76012 1.90951 1.85109 1.11954 1.46510 1.42035 1.02391 1.10121 1.75495 1.17488 0.87080 0.93055 0.87047 1.18797 1.04902 1.17971 0.90193 1.19528 0.78458 0.75655 0.85205 1.90867 1.32292 1.38076 1.81170 1.84579 1.52566 1.73267 1.22310 1.23861 0.98126 0.96249 0.91467 1.77251 1.00921 1.16535 1.15228 1.50029 1.16255 1.32307 1.09202 1.19996 0.94810 0.99279 0.72835 1.21320 1.19215 1.15608 1.00855 0.90620 1.24875 0.97137 0.96402 0.95098 1.69918 1.41658 1.36666 1.04916 0.86322 0.81393 0.81739 0.77168 1.20251 1.20968 1.19440 1.21819 0.90392 1.00680 1.00743 0.91270 0.91350 0.91587 0.77555 0.74060 0.73653 0.79102 0.91803 0.93022 0.92274 0.82257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 10.39 36.01 0.37 -0.39 16 2 C -0.19 -2.52 6.14 -104.93 -0.64 -3.16 16 3 C -0.01 -0.15 12.00 29.63 0.36 0.21 16 4 O -0.16 -2.44 10.41 4.98 0.05 -2.38 16 5 C -0.06 -1.02 7.13 -36.81 -0.26 -1.29 16 6 C 0.62 12.94 7.74 -12.90 -0.10 12.84 16 7 O -0.47 -11.51 15.59 5.19 0.08 -11.43 16 8 N -0.65 -12.45 4.51 -12.30 -0.06 -12.51 16 9 C 0.38 7.94 6.48 -153.52 -0.99 6.95 16 10 C -0.30 -5.66 6.15 -104.85 -0.64 -6.30 16 11 C 0.57 9.47 8.31 34.15 0.28 9.75 16 12 O -0.53 -9.96 17.08 -19.34 -0.33 -10.29 16 13 O -0.52 -6.40 13.28 -40.85 -0.54 -6.94 16 14 C 0.09 1.57 11.86 -16.97 -0.20 1.37 16 15 N -0.28 -5.87 12.47 30.88 0.39 -5.48 16 16 N -0.30 -6.78 3.58 -61.15 -0.22 -7.00 16 17 C 0.25 6.23 6.08 -5.19 -0.03 6.20 16 18 C -0.53 -14.75 8.86 -34.44 -0.31 -15.05 16 19 H 0.08 2.25 7.10 -52.49 -0.37 1.87 16 20 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 21 N -0.89 -25.14 13.29 55.43 0.74 -24.41 16 22 Si 0.91 22.00 29.54 -169.99 -5.02 16.98 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 26 C -0.12 -1.89 10.57 -39.38 -0.42 -2.31 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.21 1.47 8.06 -52.48 -0.42 1.05 16 31 H 0.42 6.83 8.58 -40.82 -0.35 6.48 16 32 H 0.41 3.02 9.11 45.56 0.42 3.44 16 33 H 0.19 2.52 8.06 -52.49 -0.42 2.10 16 34 H 0.06 1.67 8.14 -51.93 -0.42 1.25 16 35 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.16 2.56 8.06 -52.49 -0.42 2.14 16 LS Contribution 346.20 15.07 5.22 5.22 Total: -1.00 -34.74 346.20 -5.21 -39.94 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -2.83 Total: 7.72 kcal Atomic # 6 Polarization: 13.27 SS G_CDS: -2.68 Total: 10.58 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: 0.85 Total: -49.40 kcal Atomic # 8 Polarization: -30.31 SS G_CDS: -0.74 Total: -31.05 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.74 -5.21 -39.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574180196.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.855 kcal (2) G-P(sol) polarization free energy of solvation -34.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds