Wall clock time and date at job start Tue Mar 31 2020 12:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86794 * 120.00461 * 2 1 4 4 H 1.48500 * 109.47075 * 239.99839 * 3 2 1 5 5 H 1.48504 * 109.47104 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47353 * 119.99332 * 3 2 1 7 7 C 1.38984 * 119.99344 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99273 * 184.61733 * 7 2 1 9 9 N 1.36971 * 120.00547 * 4.62355 * 7 2 1 10 10 C 1.46499 * 119.99501 * 305.17175 * 9 7 2 11 11 C 1.53001 * 109.47010 * 264.86847 * 10 9 7 12 12 C 1.50695 * 109.47425 * 180.02562 * 11 10 9 13 13 O 1.20826 * 120.00167 * 359.97438 * 12 11 10 14 14 O 1.34229 * 120.00051 * 180.02562 * 12 11 10 15 15 C 1.34768 * 120.00305 * 125.16549 * 9 7 2 16 16 O 1.21651 * 119.99955 * 183.43237 * 15 9 7 17 17 C 1.47164 * 120.00101 * 3.43469 * 15 9 7 18 18 C 1.38091 * 126.82028 * 352.34489 * 17 15 9 19 19 N 1.34124 * 107.87216 * 179.86596 * 18 17 15 20 20 H 0.97006 * 125.15606 * 180.11311 * 19 18 17 21 21 N 1.39768 * 109.69467 * 0.40763 * 19 18 17 22 22 C 1.31364 * 109.10394 * 359.74571 * 21 19 18 23 23 C 1.48313 * 126.51748 * 179.97438 * 22 21 19 24 24 C 1.46742 * 127.11700 * 325.02841 * 23 22 21 25 25 C 1.34354 * 106.02172 * 179.97438 * 24 23 22 26 26 O 1.34161 * 109.00956 * 0.02562 * 25 24 23 27 27 C 1.34086 * 110.75018 * 359.75686 * 26 25 24 28 28 H 0.97002 * 119.99295 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.47616 * 24.86710 * 10 9 7 30 30 H 1.09000 * 109.47249 * 144.87493 * 10 9 7 31 31 H 1.09000 * 109.47331 * 300.00901 * 11 10 9 32 32 H 1.09005 * 109.47023 * 60.00096 * 11 10 9 33 33 H 0.96709 * 116.99794 * 180.02562 * 14 12 11 34 34 H 1.08005 * 126.06446 * 359.97438 * 18 17 15 35 35 H 1.07994 * 126.98768 * 359.97438 * 24 23 22 36 36 H 1.08004 * 125.49534 * 180.02562 * 25 24 23 37 37 H 1.07997 * 125.77345 * 180.24839 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 3.1020 1.6962 -1.2125 5 1 1.2833 2.7464 -0.0006 6 1 3.1019 1.6963 1.2126 7 6 2.0089 -1.2037 0.0005 8 1 3.0863 -1.2052 0.0758 9 7 1.3274 -2.3880 -0.0945 10 6 0.2587 -2.6966 0.8588 11 6 0.8245 -3.5383 2.0044 12 6 -0.2749 -3.8562 2.9847 13 8 -1.3959 -3.4509 2.7877 14 8 -0.0086 -4.5890 4.0774 15 6 1.6399 -3.2693 -1.0651 16 8 0.9938 -4.2927 -1.1884 17 6 2.7626 -2.9937 -1.9757 18 6 3.4916 -1.8239 -2.0603 19 7 4.4229 -1.9872 -3.0116 20 1 5.0741 -1.3187 -3.2764 21 7 4.3087 -3.2641 -3.5683 22 6 3.3254 -3.9043 -2.9777 23 6 2.8704 -5.2855 -3.2693 24 6 2.8447 -5.9519 -4.5764 25 6 2.3591 -7.1848 -4.3545 26 8 2.0921 -7.3205 -3.0467 27 6 2.3959 -6.1971 -2.3808 28 1 -0.4849 0.8401 -0.0004 29 1 -0.1514 -1.7688 1.2578 30 1 -0.5295 -3.2544 0.3531 31 1 1.2347 -4.4660 1.6054 32 1 1.6127 -2.9805 2.5101 33 1 -0.7462 -4.7673 4.6769 34 1 3.3399 -0.9358 -1.4648 35 1 3.1534 -5.5359 -5.5240 36 1 2.2080 -7.9442 -5.1075 37 1 2.2808 -6.0424 -1.3182 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608185466.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:12 Heat of formation + Delta-G solvation = -48.739858 kcal Electronic energy + Delta-G solvation = -26758.255764 eV Core-core repulsion = 22696.704514 eV Total energy + Delta-G solvation = -4061.551250 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.105 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.16800 -41.82515 -41.22050 -39.83766 -37.15742 -36.70867 -34.41318 -33.87740 -32.66503 -31.88803 -30.69503 -30.00544 -27.18977 -25.87610 -24.06446 -23.27289 -22.24313 -21.82397 -21.00409 -20.36278 -19.75561 -19.01990 -18.15084 -17.67915 -17.47870 -17.35981 -16.88366 -16.75897 -16.15082 -15.93779 -15.77511 -15.56679 -15.01370 -14.61256 -14.43639 -14.21821 -13.99757 -13.73448 -13.59412 -13.39040 -13.15452 -12.92939 -12.79359 -12.52240 -12.35730 -12.12867 -11.96094 -11.80285 -11.60193 -11.26518 -10.78416 -10.44440 -10.11384 -9.61414 -9.27389 -9.09913 -8.23346 -6.24039 0.58479 0.87307 1.23026 1.24655 1.50418 1.53472 1.61182 1.88384 2.03470 2.10663 2.31363 2.35110 2.81138 3.08284 3.16198 3.66121 3.82535 4.07590 4.20979 4.21382 4.32508 4.52519 4.55533 4.69728 4.75423 4.84719 4.92605 5.07549 5.11184 5.31986 5.38121 5.49277 5.52275 5.61570 5.65240 6.20923 6.27289 6.40711 6.46383 6.69175 7.04973 7.12368 7.66127 8.09576 8.78456 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.009639 B = 0.005857 C = 0.003891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2904.305309 B = 4779.209683 C = 7194.035395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.011 3.989 3 Si 0.971 3.029 4 H -0.244 1.244 5 H -0.295 1.295 6 H -0.258 1.258 7 C -0.363 4.363 8 H 0.112 0.888 9 N -0.448 5.448 10 C 0.144 3.856 11 C -0.117 4.117 12 C 0.494 3.506 13 O -0.551 6.551 14 O -0.508 6.508 15 C 0.552 3.448 16 O -0.620 6.620 17 C -0.292 4.292 18 C 0.126 3.874 19 N -0.462 5.462 20 H 0.455 0.545 21 N -0.310 5.310 22 C 0.176 3.824 23 C -0.153 4.153 24 C -0.210 4.210 25 C -0.034 4.034 26 O -0.190 6.190 27 C 0.033 3.967 28 H 0.271 0.729 29 H 0.085 0.915 30 H 0.030 0.970 31 H 0.103 0.897 32 H 0.119 0.881 33 H 0.426 0.574 34 H 0.227 0.773 35 H 0.161 0.839 36 H 0.250 0.750 37 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.500 -4.818 -0.771 9.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.194 4.194 3 Si 0.793 3.207 4 H -0.168 1.168 5 H -0.221 1.221 6 H -0.182 1.182 7 C -0.490 4.490 8 H 0.129 0.871 9 N -0.167 5.167 10 C 0.020 3.980 11 C -0.155 4.155 12 C 0.338 3.662 13 O -0.442 6.442 14 O -0.322 6.322 15 C 0.344 3.656 16 O -0.508 6.508 17 C -0.306 4.306 18 C -0.024 4.024 19 N -0.171 5.171 20 H 0.303 0.697 21 N -0.132 5.132 22 C 0.008 3.992 23 C -0.157 4.157 24 C -0.230 4.230 25 C -0.099 4.099 26 O -0.086 6.086 27 C -0.037 4.037 28 H 0.081 0.919 29 H 0.104 0.896 30 H 0.048 0.952 31 H 0.121 0.879 32 H 0.137 0.863 33 H 0.287 0.713 34 H 0.243 0.757 35 H 0.179 0.821 36 H 0.265 0.735 37 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 8.828 -5.284 -1.877 10.458 hybrid contribution -1.029 1.627 0.905 2.127 sum 7.799 -3.657 -0.972 8.669 Atomic orbital electron populations 1.69961 1.08216 1.28817 1.45893 1.26572 0.95862 1.03108 0.93875 0.85354 0.78239 0.76562 0.80574 1.16758 1.22115 1.18175 1.19752 0.92625 0.82229 1.54386 0.87120 1.43163 1.32507 1.16792 1.24198 1.20848 0.89631 0.98825 0.88708 1.21677 0.96463 1.03029 0.94380 1.23460 0.88990 0.73279 0.80505 1.90709 1.25886 1.51745 1.75869 1.84510 1.46972 1.66404 1.34291 1.17875 0.83639 0.84039 0.80093 1.90555 1.55602 1.30046 1.74583 1.21291 1.05733 0.96335 1.07260 1.24869 0.87246 1.00185 0.90082 1.46083 1.28943 1.12551 1.29475 0.69720 1.77041 1.20822 0.93089 1.22294 1.21052 0.92502 0.92588 0.93067 1.19214 1.10088 0.91465 0.94918 1.22970 1.07497 0.95148 0.97364 1.24638 1.02569 0.99570 0.83158 1.83900 1.67057 1.36661 1.20940 1.24276 0.97947 0.83162 0.98351 0.91932 0.89642 0.95156 0.87911 0.86321 0.71282 0.75726 0.82099 0.73451 0.77892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -45.81 11.46 21.67 0.25 -45.56 16 2 C 0.01 0.48 5.34 84.93 0.45 0.94 16 3 Si 0.97 33.64 29.08 68.60 2.00 35.63 16 4 H -0.24 -7.40 7.11 99.48 0.71 -6.70 16 5 H -0.30 -10.96 7.11 99.48 0.71 -10.25 16 6 H -0.26 -8.45 7.11 99.48 0.71 -7.75 16 7 C -0.36 -15.91 6.33 84.07 0.53 -15.38 16 8 H 0.11 4.29 5.92 -2.91 -0.02 4.28 16 9 N -0.45 -21.14 2.45 -639.52 -1.57 -22.71 16 10 C 0.14 6.80 4.15 86.38 0.36 7.16 16 11 C -0.12 -4.35 6.10 29.85 0.18 -4.17 16 12 C 0.49 17.31 8.33 71.23 0.59 17.91 16 13 O -0.55 -23.42 16.74 21.96 0.37 -23.05 16 14 O -0.51 -12.97 13.42 -51.40 -0.69 -13.66 16 15 C 0.55 26.44 7.58 86.59 0.66 27.10 16 16 O -0.62 -31.62 12.96 -4.19 -0.05 -31.68 16 17 C -0.29 -12.45 6.21 -18.78 -0.12 -12.57 16 18 C 0.13 4.42 10.27 84.31 0.87 5.29 16 19 N -0.46 -13.87 7.20 -56.36 -0.41 -14.28 16 20 H 0.46 9.32 8.96 -213.53 -1.91 7.40 16 21 N -0.31 -11.24 12.65 -44.49 -0.56 -11.80 16 22 C 0.18 7.15 7.33 44.09 0.32 7.48 16 23 C -0.15 -5.88 6.03 -18.93 -0.11 -5.99 16 24 C -0.21 -6.47 11.15 23.61 0.26 -6.21 16 25 C -0.03 -0.87 12.04 66.93 0.81 -0.06 16 26 O -0.19 -6.07 10.55 0.96 0.01 -6.06 16 27 C 0.03 1.22 10.28 67.27 0.69 1.91 16 28 H 0.27 13.36 8.31 -92.71 -0.77 12.59 16 29 H 0.09 4.44 6.02 -2.39 -0.01 4.43 16 30 H 0.03 1.59 7.49 -2.39 -0.02 1.57 16 31 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16 32 H 0.12 4.02 8.14 -2.38 -0.02 4.00 16 33 H 0.43 6.66 9.10 -74.05 -0.67 5.99 16 34 H 0.23 7.49 4.28 -2.91 -0.01 7.47 16 35 H 0.16 4.33 8.06 -2.91 -0.02 4.31 16 36 H 0.25 3.47 8.06 -2.91 -0.02 3.45 16 37 H 0.20 7.78 6.65 -2.91 -0.02 7.76 16 Total: -1.00 -70.93 328.14 3.43 -67.50 By element: Atomic # 1 Polarization: 43.67 SS G_CDS: -1.40 Total: 42.26 kcal Atomic # 6 Polarization: 17.91 SS G_CDS: 5.50 Total: 23.40 kcal Atomic # 7 Polarization: -92.06 SS G_CDS: -2.29 Total: -94.35 kcal Atomic # 8 Polarization: -74.08 SS G_CDS: -0.37 Total: -74.45 kcal Atomic # 14 Polarization: 33.64 SS G_CDS: 2.00 Total: 35.63 kcal Total: -70.93 3.43 -67.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608185466.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.762 kcal (2) G-P(sol) polarization free energy of solvation -70.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds