Wall clock time and date at job start Tue Mar 31 2020 12:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31324 * 1 3 3 Si 1.86799 * 119.99964 * 2 1 4 4 H 1.48492 * 109.47370 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46970 * 300.00031 * 3 2 1 6 6 H 1.48504 * 109.46918 * 59.99552 * 3 2 1 7 7 C 1.39109 * 120.00429 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00297 * 162.89999 * 7 2 1 9 9 N 1.36798 * 119.99596 * 342.90183 * 7 2 1 10 10 C 1.46506 * 120.00035 * 317.98555 * 9 7 2 11 11 C 1.52994 * 109.47240 * 264.51475 * 10 9 7 12 12 C 1.50704 * 109.46780 * 180.02562 * 11 10 9 13 13 O 1.20820 * 120.00069 * 359.97438 * 12 11 10 14 14 O 1.34234 * 119.99571 * 180.02562 * 12 11 10 15 15 C 1.34775 * 120.00250 * 137.99094 * 9 7 2 16 16 O 1.21561 * 120.00407 * 185.03315 * 15 9 7 17 17 C 1.48011 * 119.99751 * 5.03532 * 15 9 7 18 18 C 1.40269 * 121.00695 * 319.43659 * 17 15 9 19 19 C 1.37967 * 118.69671 * 179.71980 * 18 17 15 20 20 N 1.31686 * 121.44057 * 0.28033 * 19 18 17 21 21 C 1.32977 * 122.27848 * 359.97438 * 20 19 18 22 22 C 1.38971 * 121.01125 * 139.70579 * 17 15 9 23 23 C 1.50967 * 133.28920 * 359.91167 * 22 17 15 24 24 C 1.51438 * 103.91612 * 180.33629 * 23 22 17 25 25 O 1.21278 * 126.45766 * 180.02562 * 24 23 22 26 26 N 1.34349 * 107.08877 * 0.02562 * 24 23 22 27 27 H 0.96995 * 120.00446 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47071 * 24.51784 * 10 9 7 29 29 H 1.08999 * 109.46585 * 144.51572 * 10 9 7 30 30 H 1.08996 * 109.47743 * 300.00055 * 11 10 9 31 31 H 1.08999 * 109.47252 * 60.00505 * 11 10 9 32 32 H 0.96703 * 116.99441 * 179.97438 * 14 12 11 33 33 H 1.08003 * 120.65041 * 359.97438 * 18 17 15 34 34 H 1.08008 * 119.28084 * 180.25070 * 19 18 17 35 35 H 1.08993 * 110.53414 * 61.72636 * 23 22 17 36 36 H 1.09001 * 110.65658 * 299.00493 * 23 22 17 37 37 H 0.97002 * 123.79598 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2472 1.6177 0.0000 4 1 3.7072 1.3465 0.0006 5 1 1.8884 2.3964 -1.2125 6 1 1.8883 2.3965 1.2125 7 6 2.0089 -1.2047 0.0005 8 1 3.0530 -1.2254 -0.2744 9 7 1.3702 -2.3630 0.3494 10 6 0.4461 -2.3763 1.4862 11 6 1.1858 -2.8489 2.7392 12 6 0.2350 -2.8631 3.9084 13 8 -0.9160 -2.5290 3.7551 14 8 0.6671 -3.2460 5.1202 15 6 1.5912 -3.4921 -0.3526 16 8 0.9565 -4.4980 -0.1015 17 6 2.6068 -3.5074 -1.4292 18 6 2.7463 -2.4218 -2.3064 19 6 3.7126 -2.4840 -3.2892 20 7 4.4935 -3.5364 -3.4189 21 6 4.3996 -4.5935 -2.6177 22 6 3.4474 -4.5999 -1.6050 23 6 3.5945 -5.9192 -0.8860 24 6 4.7223 -6.6115 -1.6223 25 8 5.1767 -7.7089 -1.3768 26 7 5.1248 -5.7811 -2.5987 27 1 -0.4850 0.8400 -0.0004 28 1 0.0581 -1.3711 1.6507 29 1 -0.3803 -3.0547 1.2745 30 1 1.5739 -3.8541 2.5748 31 1 2.0123 -2.1705 2.9509 32 1 0.0207 -3.2383 5.8394 33 1 2.1124 -1.5524 -2.2117 34 1 3.8309 -1.6517 -3.9672 35 1 2.6753 -6.5001 -0.9611 36 1 3.8608 -5.7600 0.1589 37 1 5.8405 -5.9861 -3.2205 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608186259.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:44 Heat of formation + Delta-G solvation = -103.594133 kcal Electronic energy + Delta-G solvation = -26737.323180 eV Core-core repulsion = 22673.393270 eV Total energy + Delta-G solvation = -4063.929910 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.105 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.50705 -39.95573 -39.22326 -38.25672 -35.92147 -35.88166 -35.20609 -32.93392 -32.19620 -31.02787 -29.89965 -28.18202 -25.46994 -24.92006 -23.14030 -22.13461 -21.24276 -20.71530 -19.68602 -18.46443 -17.81516 -17.04573 -16.80386 -16.33233 -16.15245 -15.95842 -15.62477 -15.14442 -15.01596 -14.44728 -14.32835 -13.94547 -13.84206 -13.44612 -13.29128 -12.94632 -12.77459 -12.63283 -12.60734 -12.00387 -11.88388 -11.44062 -11.26687 -11.21917 -11.07272 -10.76345 -10.56900 -10.30444 -10.21453 -10.20442 -9.58160 -9.38623 -9.26489 -8.72270 -8.08159 -7.80553 -6.64860 -4.41059 1.23222 1.24917 2.45879 2.55760 2.75258 2.95325 3.08131 3.10479 3.26321 3.59332 3.89191 4.10699 4.14409 4.32947 4.65869 4.70914 4.89652 5.09376 5.37991 5.46975 5.56432 5.63774 5.74184 5.79803 5.86628 5.99519 6.13674 6.18365 6.49853 6.60512 6.67375 6.68717 6.73390 7.02270 7.08712 7.19603 7.59228 7.84566 8.04924 8.13953 8.19750 8.74724 9.09836 9.54253 10.36799 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.010778 B = 0.005341 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.348187 B = 5241.078721 C = 7250.540211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.051 3.949 3 Si 0.911 3.089 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.359 4.359 8 H 0.096 0.904 9 N -0.419 5.419 10 C 0.131 3.869 11 C -0.127 4.127 12 C 0.483 3.517 13 O -0.513 6.513 14 O -0.524 6.524 15 C 0.507 3.493 16 O -0.586 6.586 17 C 0.002 3.998 18 C -0.130 4.130 19 C 0.115 3.885 20 N -0.502 5.502 21 C 0.326 3.674 22 C -0.150 4.150 23 C -0.107 4.107 24 C 0.538 3.462 25 O -0.507 6.507 26 N -0.645 5.645 27 H 0.276 0.724 28 H 0.112 0.888 29 H 0.070 0.930 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.403 0.597 33 H 0.171 0.829 34 H 0.165 0.835 35 H 0.133 0.867 36 H 0.124 0.876 37 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.669 -1.388 0.386 5.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.158 4.158 3 Si 0.737 3.263 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.486 4.486 8 H 0.114 0.886 9 N -0.136 5.136 10 C 0.008 3.992 11 C -0.166 4.166 12 C 0.326 3.674 13 O -0.401 6.401 14 O -0.336 6.336 15 C 0.296 3.704 16 O -0.471 6.471 17 C -0.009 4.009 18 C -0.151 4.151 19 C -0.041 4.041 20 N -0.217 5.217 21 C 0.095 3.905 22 C -0.156 4.156 23 C -0.147 4.147 24 C 0.326 3.674 25 O -0.381 6.381 26 N -0.291 5.291 27 H 0.086 0.914 28 H 0.130 0.870 29 H 0.088 0.912 30 H 0.117 0.883 31 H 0.124 0.876 32 H 0.260 0.740 33 H 0.189 0.811 34 H 0.182 0.818 35 H 0.151 0.849 36 H 0.142 0.858 37 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 5.925 -2.282 -0.246 6.354 hybrid contribution -0.248 1.032 0.786 1.321 sum 5.677 -1.250 0.540 5.838 Atomic orbital electron populations 1.69882 1.06311 1.28540 1.43096 1.25490 0.95132 0.99981 0.95233 0.86111 0.80196 0.81550 0.78473 1.18796 1.20208 1.20271 1.19519 0.95205 0.84060 1.49865 0.88641 1.43196 1.38963 1.07715 1.23731 1.21154 0.91158 1.04670 0.82261 1.21857 0.98563 1.05023 0.91160 1.23685 0.88245 0.72155 0.83353 1.90715 1.20324 1.44373 1.84653 1.84584 1.47912 1.80835 1.20225 1.18234 0.84723 0.85092 0.82383 1.90665 1.51598 1.34905 1.69941 1.19621 0.93849 0.91528 0.95904 1.22871 0.99193 0.99422 0.93643 1.22413 0.91235 0.93918 0.96575 1.66501 1.28166 0.99934 1.27122 1.18120 0.91575 0.87614 0.93210 1.20350 0.98779 0.96987 0.99525 1.20984 0.99231 0.93412 1.01025 1.20621 0.83396 0.83894 0.79520 1.90798 1.60801 1.18411 1.68103 1.43399 1.36334 1.15413 1.33988 0.91384 0.87019 0.91164 0.88290 0.87634 0.73968 0.81130 0.81825 0.84925 0.85832 0.74833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -19.88 11.61 55.50 0.64 -19.23 16 2 C 0.05 1.10 4.97 -17.45 -0.09 1.02 16 3 Si 0.91 16.92 29.59 -169.99 -5.03 11.89 16 4 H -0.26 -4.80 7.11 56.52 0.40 -4.39 16 5 H -0.28 -5.15 7.11 56.52 0.40 -4.75 16 6 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 7 C -0.36 -7.64 6.37 -15.01 -0.10 -7.73 16 8 H 0.10 1.96 6.60 -52.49 -0.35 1.61 16 9 N -0.42 -9.09 2.49 -115.83 -0.29 -9.38 16 10 C 0.13 2.81 4.20 -4.04 -0.02 2.79 16 11 C -0.13 -2.23 6.10 -27.88 -0.17 -2.40 16 12 C 0.48 8.11 8.33 36.01 0.30 8.41 16 13 O -0.51 -10.19 16.74 -18.75 -0.31 -10.50 16 14 O -0.52 -6.82 13.42 -39.27 -0.53 -7.35 16 15 C 0.51 10.89 7.26 -12.25 -0.09 10.80 16 16 O -0.59 -13.67 16.22 5.31 0.09 -13.58 16 17 C 0.00 0.04 5.32 -104.86 -0.56 -0.52 16 18 C -0.13 -2.19 7.96 -38.92 -0.31 -2.50 16 19 C 0.11 1.67 11.14 -17.71 -0.20 1.47 16 20 N -0.50 -7.75 10.37 -12.38 -0.13 -7.88 16 21 C 0.33 5.08 8.27 -154.42 -1.28 3.80 16 22 C -0.15 -2.52 6.14 -103.94 -0.64 -3.16 16 23 C -0.11 -1.61 6.39 -28.54 -0.18 -1.79 16 24 C 0.54 8.00 8.71 -10.81 -0.09 7.91 16 25 O -0.51 -8.69 18.03 5.56 0.10 -8.59 16 26 N -0.64 -8.77 5.85 -11.21 -0.07 -8.83 16 27 H 0.28 6.17 8.31 -40.82 -0.34 5.83 16 28 H 0.11 2.61 5.74 -51.93 -0.30 2.31 16 29 H 0.07 1.64 7.48 -51.93 -0.39 1.25 16 30 H 0.10 1.69 8.14 -51.93 -0.42 1.26 16 31 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 32 H 0.40 3.35 9.10 45.56 0.41 3.77 16 33 H 0.17 3.04 6.29 -52.48 -0.33 2.71 16 34 H 0.16 1.82 8.06 -52.48 -0.42 1.39 16 35 H 0.13 2.01 8.14 -51.93 -0.42 1.58 16 36 H 0.12 1.73 8.14 -51.93 -0.42 1.31 16 37 H 0.41 4.64 8.96 -40.82 -0.37 4.28 16 LS Contribution 329.91 15.07 4.97 4.97 Total: -1.00 -29.30 329.91 -6.53 -35.83 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -2.56 Total: 14.57 kcal Atomic # 6 Polarization: 21.50 SS G_CDS: -3.41 Total: 18.08 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: 0.16 Total: -45.33 kcal Atomic # 8 Polarization: -39.37 SS G_CDS: -0.65 Total: -40.02 kcal Atomic # 14 Polarization: 16.92 SS G_CDS: -5.03 Total: 11.89 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.30 -6.53 -35.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608186259.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.761 kcal (2) G-P(sol) polarization free energy of solvation -29.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds