Wall clock time and date at job start Tue Mar 31 2020 12:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31324 * 1 3 3 Si 1.86799 * 119.99964 * 2 1 4 4 H 1.48492 * 109.47370 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46970 * 300.00031 * 3 2 1 6 6 H 1.48504 * 109.46918 * 59.99552 * 3 2 1 7 7 C 1.39109 * 120.00429 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00297 * 162.89999 * 7 2 1 9 9 N 1.36798 * 119.99596 * 342.90183 * 7 2 1 10 10 C 1.46506 * 120.00035 * 317.98555 * 9 7 2 11 11 C 1.52994 * 109.47240 * 264.51475 * 10 9 7 12 12 C 1.50704 * 109.46780 * 180.02562 * 11 10 9 13 13 O 1.20820 * 120.00069 * 359.97438 * 12 11 10 14 14 O 1.34234 * 119.99571 * 180.02562 * 12 11 10 15 15 C 1.34775 * 120.00250 * 137.99094 * 9 7 2 16 16 O 1.21561 * 120.00407 * 185.03315 * 15 9 7 17 17 C 1.48011 * 119.99751 * 5.03532 * 15 9 7 18 18 C 1.40269 * 121.00695 * 319.43659 * 17 15 9 19 19 C 1.37967 * 118.69671 * 179.71980 * 18 17 15 20 20 N 1.31686 * 121.44057 * 0.28033 * 19 18 17 21 21 C 1.32977 * 122.27848 * 359.97438 * 20 19 18 22 22 C 1.38971 * 121.01125 * 139.70579 * 17 15 9 23 23 C 1.50967 * 133.28920 * 359.91167 * 22 17 15 24 24 C 1.51438 * 103.91612 * 180.33629 * 23 22 17 25 25 O 1.21278 * 126.45766 * 180.02562 * 24 23 22 26 26 N 1.34349 * 107.08877 * 0.02562 * 24 23 22 27 27 H 0.96995 * 120.00446 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47071 * 24.51784 * 10 9 7 29 29 H 1.08999 * 109.46585 * 144.51572 * 10 9 7 30 30 H 1.08996 * 109.47743 * 300.00055 * 11 10 9 31 31 H 1.08999 * 109.47252 * 60.00505 * 11 10 9 32 32 H 0.96703 * 116.99441 * 179.97438 * 14 12 11 33 33 H 1.08003 * 120.65041 * 359.97438 * 18 17 15 34 34 H 1.08008 * 119.28084 * 180.25070 * 19 18 17 35 35 H 1.08993 * 110.53414 * 61.72636 * 23 22 17 36 36 H 1.09001 * 110.65658 * 299.00493 * 23 22 17 37 37 H 0.97002 * 123.79598 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2472 1.6177 0.0000 4 1 3.7072 1.3465 0.0006 5 1 1.8884 2.3964 -1.2125 6 1 1.8883 2.3965 1.2125 7 6 2.0089 -1.2047 0.0005 8 1 3.0530 -1.2254 -0.2744 9 7 1.3702 -2.3630 0.3494 10 6 0.4461 -2.3763 1.4862 11 6 1.1858 -2.8489 2.7392 12 6 0.2350 -2.8631 3.9084 13 8 -0.9160 -2.5290 3.7551 14 8 0.6671 -3.2460 5.1202 15 6 1.5912 -3.4921 -0.3526 16 8 0.9565 -4.4980 -0.1015 17 6 2.6068 -3.5074 -1.4292 18 6 2.7463 -2.4218 -2.3064 19 6 3.7126 -2.4840 -3.2892 20 7 4.4935 -3.5364 -3.4189 21 6 4.3996 -4.5935 -2.6177 22 6 3.4474 -4.5999 -1.6050 23 6 3.5945 -5.9192 -0.8860 24 6 4.7223 -6.6115 -1.6223 25 8 5.1767 -7.7089 -1.3768 26 7 5.1248 -5.7811 -2.5987 27 1 -0.4850 0.8400 -0.0004 28 1 0.0581 -1.3711 1.6507 29 1 -0.3803 -3.0547 1.2745 30 1 1.5739 -3.8541 2.5748 31 1 2.0123 -2.1705 2.9509 32 1 0.0207 -3.2383 5.8394 33 1 2.1124 -1.5524 -2.2117 34 1 3.8309 -1.6517 -3.9672 35 1 2.6753 -6.5001 -0.9611 36 1 3.8608 -5.7600 0.1589 37 1 5.8405 -5.9861 -3.2205 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608186259.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:43 Heat of formation + Delta-G solvation = -123.805513 kcal Electronic energy + Delta-G solvation = -26738.199611 eV Core-core repulsion = 22673.393270 eV Total energy + Delta-G solvation = -4064.806341 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.105 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.76882 -41.34276 -40.66294 -39.68103 -37.25486 -37.15227 -36.81481 -34.29569 -33.83470 -32.48405 -31.23906 -29.44440 -27.13215 -26.41606 -24.53363 -23.41379 -22.47962 -22.06126 -21.26115 -19.93262 -19.12750 -18.35567 -18.21353 -17.72274 -17.59294 -17.26750 -17.00112 -16.58713 -16.43521 -15.95496 -15.80252 -15.36859 -15.14578 -14.76799 -14.60830 -14.39624 -14.25204 -14.02673 -13.84526 -13.54575 -13.26844 -13.00744 -12.73882 -12.68925 -12.55119 -12.05641 -12.04358 -11.89381 -11.65173 -11.46822 -11.14007 -10.92749 -10.61589 -10.25882 -9.56018 -9.27497 -8.31225 -6.12296 -0.11150 -0.02521 1.20168 1.23523 1.47775 1.56112 1.57143 1.67246 1.90617 2.09016 2.37963 2.76423 2.86418 2.89755 3.09015 3.40549 3.69536 3.81649 3.98112 4.01081 4.16086 4.36938 4.43741 4.47823 4.55172 4.69582 4.76152 4.83316 4.99041 5.27385 5.32425 5.38840 5.46415 5.49430 5.60438 5.77498 5.92601 6.36644 6.64994 6.93744 7.00858 7.06936 7.42917 7.87445 8.71810 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.010778 B = 0.005341 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.348187 B = 5241.078721 C = 7250.540211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.016 3.984 3 Si 0.974 3.026 4 H -0.251 1.251 5 H -0.276 1.276 6 H -0.287 1.287 7 C -0.356 4.356 8 H 0.107 0.893 9 N -0.428 5.428 10 C 0.137 3.863 11 C -0.119 4.119 12 C 0.495 3.505 13 O -0.550 6.550 14 O -0.508 6.508 15 C 0.500 3.500 16 O -0.614 6.614 17 C -0.019 4.019 18 C -0.136 4.136 19 C 0.132 3.868 20 N -0.499 5.499 21 C 0.330 3.670 22 C -0.160 4.160 23 C -0.106 4.106 24 C 0.549 3.451 25 O -0.528 6.528 26 N -0.630 5.630 27 H 0.274 0.726 28 H 0.090 0.910 29 H 0.039 0.961 30 H 0.105 0.895 31 H 0.121 0.879 32 H 0.427 0.573 33 H 0.160 0.840 34 H 0.205 0.795 35 H 0.130 0.870 36 H 0.133 0.867 37 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.984 -0.894 -0.036 8.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.190 4.190 3 Si 0.797 3.203 4 H -0.174 1.174 5 H -0.201 1.201 6 H -0.213 1.213 7 C -0.484 4.484 8 H 0.124 0.876 9 N -0.144 5.144 10 C 0.013 3.987 11 C -0.158 4.158 12 C 0.338 3.662 13 O -0.441 6.441 14 O -0.321 6.321 15 C 0.290 3.710 16 O -0.501 6.501 17 C -0.030 4.030 18 C -0.157 4.157 19 C -0.024 4.024 20 N -0.214 5.214 21 C 0.099 3.901 22 C -0.166 4.166 23 C -0.145 4.145 24 C 0.337 3.663 25 O -0.403 6.403 26 N -0.277 5.277 27 H 0.084 0.916 28 H 0.108 0.892 29 H 0.057 0.943 30 H 0.123 0.877 31 H 0.139 0.861 32 H 0.288 0.712 33 H 0.177 0.823 34 H 0.222 0.778 35 H 0.147 0.853 36 H 0.151 0.849 37 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 8.281 -1.802 -0.657 8.500 hybrid contribution -0.979 0.824 0.924 1.579 sum 7.302 -0.977 0.268 7.372 Atomic orbital electron populations 1.70000 1.07965 1.29078 1.45007 1.26193 0.95449 1.02639 0.94685 0.85156 0.79613 0.77714 0.77783 1.17391 1.20121 1.21268 1.19759 0.95469 0.83841 1.49283 0.87599 1.43378 1.38854 1.08175 1.24008 1.20909 0.91043 1.02645 0.84108 1.21645 0.98533 1.05492 0.90081 1.23369 0.87224 0.71413 0.84191 1.90714 1.21714 1.46234 1.85406 1.84505 1.48362 1.79677 1.19582 1.18711 0.85032 0.84556 0.82718 1.90629 1.52827 1.35754 1.70919 1.19489 0.94265 0.93232 0.95991 1.22793 0.99956 0.98598 0.94377 1.22966 0.89308 0.94370 0.95764 1.66662 1.28071 0.99945 1.26750 1.18196 0.91222 0.88041 0.92674 1.20422 0.98877 0.97023 1.00258 1.20990 0.99276 0.92704 1.01570 1.20415 0.82983 0.83453 0.79444 1.90797 1.61485 1.19302 1.68751 1.43221 1.36242 1.14449 1.33797 0.91607 0.89158 0.94253 0.87685 0.86090 0.71150 0.82296 0.77837 0.85259 0.84935 0.73184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -42.76 11.61 21.69 0.25 -42.50 16 2 C 0.02 0.68 4.97 84.98 0.42 1.10 16 3 Si 0.97 34.09 29.59 68.60 2.03 36.12 16 4 H -0.25 -8.17 7.11 99.48 0.71 -7.46 16 5 H -0.28 -9.56 7.11 99.48 0.71 -8.85 16 6 H -0.29 -10.42 7.11 99.48 0.71 -9.72 16 7 C -0.36 -15.10 6.37 84.13 0.54 -14.57 16 8 H 0.11 4.22 6.60 -2.91 -0.02 4.20 16 9 N -0.43 -18.91 2.49 -638.65 -1.59 -20.51 16 10 C 0.14 6.08 4.20 86.38 0.36 6.44 16 11 C -0.12 -4.18 6.10 29.85 0.18 -3.99 16 12 C 0.49 16.41 8.33 71.24 0.59 17.01 16 13 O -0.55 -22.23 16.74 21.98 0.37 -21.87 16 14 O -0.51 -12.22 13.42 -51.46 -0.69 -12.91 16 15 C 0.50 21.87 7.26 86.84 0.63 22.50 16 16 O -0.61 -29.53 16.22 -3.91 -0.06 -29.59 16 17 C -0.02 -0.70 5.32 -20.02 -0.11 -0.80 16 18 C -0.14 -4.40 7.96 22.70 0.18 -4.22 16 19 C 0.13 3.45 11.14 84.65 0.94 4.39 16 20 N -0.50 -13.88 10.37 -193.09 -2.00 -15.88 16 21 C 0.33 9.52 8.27 132.80 1.10 10.62 16 22 C -0.16 -5.19 6.14 -19.42 -0.12 -5.30 16 23 C -0.11 -3.10 6.39 29.42 0.19 -2.92 16 24 C 0.55 15.46 8.71 87.96 0.77 16.23 16 25 O -0.53 -17.35 18.03 -3.02 -0.05 -17.41 16 26 N -0.63 -15.68 5.85 -308.03 -1.80 -17.48 16 27 H 0.27 12.64 8.31 -92.71 -0.77 11.87 16 28 H 0.09 4.41 5.74 -2.39 -0.01 4.40 16 29 H 0.04 1.94 7.48 -2.39 -0.02 1.92 16 30 H 0.10 3.57 8.14 -2.39 -0.02 3.55 16 31 H 0.12 3.86 8.14 -2.39 -0.02 3.84 16 32 H 0.43 6.11 9.10 -74.05 -0.67 5.43 16 33 H 0.16 5.56 6.29 -2.91 -0.02 5.54 16 34 H 0.21 3.61 8.06 -2.91 -0.02 3.59 16 35 H 0.13 3.90 8.14 -2.39 -0.02 3.88 16 36 H 0.13 3.62 8.14 -2.39 -0.02 3.60 16 37 H 0.43 8.44 8.96 -92.71 -0.83 7.61 16 Total: -1.00 -63.94 329.91 1.80 -62.14 By element: Atomic # 1 Polarization: 33.73 SS G_CDS: -0.32 Total: 33.40 kcal Atomic # 6 Polarization: 40.81 SS G_CDS: 5.68 Total: 46.49 kcal Atomic # 7 Polarization: -91.23 SS G_CDS: -5.14 Total: -96.37 kcal Atomic # 8 Polarization: -81.33 SS G_CDS: -0.44 Total: -81.78 kcal Atomic # 14 Polarization: 34.09 SS G_CDS: 2.03 Total: 36.12 kcal Total: -63.94 1.80 -62.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608186259.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.664 kcal (2) G-P(sol) polarization free energy of solvation -63.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds