Wall clock time and date at job start Tue Mar 31 2020 12:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 119.99880 * 2 1 4 4 H 1.48495 * 109.46963 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46763 * 299.99494 * 3 2 1 6 6 H 1.48499 * 109.47471 * 59.99468 * 3 2 1 7 7 C 1.37875 * 119.99746 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99450 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00143 * 0.02562 * 7 2 1 10 10 O 1.42897 * 110.64667 * 298.30326 * 9 7 2 11 11 C 1.54594 * 110.72544 * 61.45627 * 9 7 2 12 12 C 1.53989 * 105.14167 * 140.49066 * 11 9 7 13 13 N 1.47895 * 107.06068 * 1.22404 * 12 11 9 14 14 C 1.39844 * 111.00489 * 214.15514 * 13 12 11 15 15 C 1.39125 * 120.07634 * 61.89085 * 14 13 12 16 16 F 1.35097 * 120.05627 * 0.02562 * 15 14 13 17 17 C 1.38238 * 119.88462 * 179.77445 * 15 14 13 18 18 C 1.38337 * 120.04895 * 0.50345 * 17 15 14 19 19 C 1.38232 * 120.16017 * 359.74865 * 18 17 15 20 20 C 1.38190 * 120.11235 * 359.97438 * 19 18 17 21 21 C 1.50699 * 120.02596 * 180.02562 * 20 19 18 22 22 F 1.39908 * 109.46824 * 1.12580 * 21 20 19 23 23 F 1.39896 * 109.46945 * 121.12024 * 21 20 19 24 24 F 1.39902 * 109.47684 * 241.12654 * 21 20 19 25 25 C 1.48531 * 105.82065 * 334.67016 * 13 12 11 26 26 H 0.96995 * 119.99942 * 0.02562 * 1 2 3 27 27 H 0.96693 * 114.00218 * 61.69881 * 10 9 7 28 28 H 1.09006 * 110.31145 * 21.57454 * 11 9 7 29 29 H 1.09004 * 110.30969 * 259.41151 * 11 9 7 30 30 H 1.09008 * 109.91945 * 241.86817 * 12 11 9 31 31 H 1.09005 * 110.08340 * 120.67411 * 12 11 9 32 32 H 1.07991 * 119.97847 * 180.27778 * 17 15 14 33 33 H 1.07998 * 119.91788 * 179.77109 * 18 17 15 34 34 H 1.08002 * 119.93891 * 179.97438 * 19 18 17 35 35 H 1.09001 * 110.67257 * 157.63688 * 25 13 12 36 36 H 1.09000 * 110.66885 * 280.77428 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8904 2.3966 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 0.4496 -2.6182 1.1776 11 6 0.3796 -2.6277 -1.2699 12 6 0.5040 -4.1024 -1.6954 13 7 1.3715 -4.7694 -0.7004 14 6 2.1518 -5.7623 -1.3012 15 6 3.0697 -5.4243 -2.2905 16 9 3.2093 -4.1360 -2.6723 17 6 3.8423 -6.4083 -2.8784 18 6 3.6955 -7.7282 -2.4910 19 6 2.7804 -8.0669 -1.5119 20 6 2.0086 -7.0878 -0.9157 21 6 1.0119 -7.4592 0.1519 22 9 1.0684 -8.8379 0.3832 23 9 1.3177 -6.7753 1.3334 24 9 -0.2753 -7.1094 -0.2697 25 6 2.2241 -3.6985 -0.1239 26 1 -0.4850 0.8400 -0.0004 27 1 -0.2286 -1.9342 1.2625 28 1 0.7579 -1.9740 -2.0560 29 1 -0.6586 -2.3857 -1.0427 30 1 0.9566 -4.1666 -2.6850 31 1 -0.4791 -4.5732 -1.7059 32 1 4.5585 -6.1471 -3.6433 33 1 4.2976 -8.4958 -2.9543 34 1 2.6684 -9.0985 -1.2124 35 1 2.6003 -3.9919 0.8561 36 1 3.0471 -3.4579 -0.7969 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771973719.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:09 Heat of formation + Delta-G solvation = -200.355642 kcal Electronic energy + Delta-G solvation = -28523.573232 eV Core-core repulsion = 23893.670727 eV Total energy + Delta-G solvation = -4629.902506 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.094 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.80718 -48.98244 -47.38834 -47.15000 -39.81822 -37.88552 -34.84304 -32.11941 -31.99251 -30.86042 -28.26080 -28.04184 -25.83449 -24.69422 -22.69981 -22.02525 -20.54629 -19.63694 -18.52861 -18.22321 -18.08956 -17.21587 -16.58001 -16.26246 -16.10525 -15.63260 -14.97951 -14.89948 -14.45439 -14.16728 -14.12732 -13.83545 -13.66193 -13.44859 -13.37028 -13.34838 -13.26389 -12.78634 -12.56947 -12.44576 -12.21671 -11.71368 -11.69457 -11.39746 -11.29960 -11.02781 -10.72665 -10.48151 -10.40322 -9.89133 -9.35632 -9.21948 -8.71867 -8.59036 -8.21142 -8.03422 -6.21652 -4.29608 0.70479 0.91452 2.86525 3.17648 3.21320 3.30076 3.34278 3.87305 4.01640 4.15861 4.32232 4.41171 4.71282 4.73519 4.80127 5.02222 5.05967 5.24162 5.50523 5.70221 5.74814 5.84395 5.89079 5.96250 5.99122 6.08872 6.33792 6.44363 6.57025 6.77504 6.96960 7.18458 7.43888 7.46377 7.57134 7.80093 8.14456 8.72694 9.39080 9.54843 10.85669 Molecular weight = 319.09amu Principal moments of inertia in cm(-1) A = 0.019148 B = 0.004948 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.958000 B = 5657.237665 C = 6535.222399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.072 3.928 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.535 4.535 8 H 0.061 0.939 9 C 0.262 3.738 10 O -0.578 6.578 11 C -0.125 4.125 12 C 0.041 3.959 13 N -0.485 5.485 14 C 0.119 3.881 15 C 0.064 3.936 16 F -0.119 7.119 17 C -0.119 4.119 18 C -0.107 4.107 19 C -0.083 4.083 20 C -0.146 4.146 21 C 0.523 3.477 22 F -0.188 7.188 23 F -0.162 7.162 24 F -0.169 7.169 25 C 0.049 3.951 26 H 0.266 0.734 27 H 0.378 0.622 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.037 0.963 31 H 0.072 0.928 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.144 0.856 35 H 0.078 0.922 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.732 -15.309 -5.784 17.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.131 4.131 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.573 4.573 8 H 0.080 0.920 9 C 0.221 3.779 10 O -0.386 6.386 11 C -0.164 4.164 12 C -0.084 4.084 13 N -0.206 5.206 14 C 0.022 3.978 15 C 0.042 3.958 16 F -0.097 7.097 17 C -0.139 4.139 18 C -0.125 4.125 19 C -0.102 4.102 20 C -0.148 4.148 21 C 0.468 3.532 22 F -0.170 7.170 23 F -0.143 7.143 24 F -0.150 7.150 25 C -0.076 4.076 26 H 0.076 0.924 27 H 0.228 0.772 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.056 0.944 31 H 0.090 0.910 32 H 0.159 0.841 33 H 0.159 0.841 34 H 0.162 0.838 35 H 0.096 0.904 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.602 -15.890 -5.255 17.357 hybrid contribution 0.438 1.967 -0.760 2.154 sum 5.041 -13.923 -6.015 15.983 Atomic orbital electron populations 1.69741 1.05900 1.27357 1.50313 1.24984 0.94984 0.99392 0.93719 0.86416 0.80146 0.83044 0.77671 1.19690 1.20905 1.20776 1.21572 0.93582 0.90516 1.51667 0.92038 1.19268 0.86488 0.90029 0.82100 1.86158 1.51496 1.56171 1.44782 1.22936 1.02260 0.90599 1.00626 1.23061 0.96265 0.97068 0.92028 1.62647 1.17900 1.11528 1.28533 1.19126 0.93200 0.93296 0.92184 1.18457 0.99605 0.79807 0.97952 1.91551 1.94641 1.33944 1.89612 1.21347 0.99311 0.92712 1.00481 1.20924 0.98631 0.95559 0.97421 1.21012 0.94410 0.99329 0.95404 1.19841 1.00941 0.93568 1.00485 1.17809 0.80453 0.73403 0.81523 1.93125 1.96479 1.32179 1.95201 1.93263 1.92817 1.79416 1.48808 1.93219 1.40159 1.91708 1.89885 1.23513 0.95344 0.89782 0.98935 0.92371 0.77249 0.91606 0.91035 0.94447 0.91000 0.84103 0.84080 0.83810 0.90397 0.91768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.82 11.00 55.43 0.61 -23.21 16 2 C 0.07 1.89 5.28 -17.82 -0.09 1.80 16 3 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.53 -14.35 8.15 -34.44 -0.28 -14.63 16 8 H 0.06 1.65 7.78 -52.49 -0.41 1.24 16 9 C 0.26 6.56 0.95 -89.91 -0.09 6.47 16 10 O -0.58 -15.39 13.09 -35.23 -0.46 -15.85 16 11 C -0.13 -2.92 5.26 -25.38 -0.13 -3.05 16 12 C 0.04 0.83 6.23 -2.76 -0.02 0.81 16 13 N -0.48 -9.74 4.02 -167.08 -0.67 -10.41 16 14 C 0.12 2.02 4.74 -83.67 -0.40 1.62 16 15 C 0.06 0.98 6.24 -39.25 -0.24 0.73 16 16 F -0.12 -2.09 13.47 2.25 0.03 -2.06 16 17 C -0.12 -1.34 10.02 -39.55 -0.40 -1.74 16 18 C -0.11 -1.00 10.04 -39.55 -0.40 -1.40 16 19 C -0.08 -0.91 9.43 -39.60 -0.37 -1.28 16 20 C -0.15 -2.15 5.39 -104.44 -0.56 -2.71 16 21 C 0.52 8.21 2.97 36.01 0.11 8.32 16 22 F -0.19 -2.53 15.97 2.25 0.04 -2.50 16 23 F -0.16 -2.93 16.82 2.25 0.04 -2.89 16 24 F -0.17 -2.89 16.95 2.25 0.04 -2.85 16 25 C 0.05 1.09 5.39 -1.90 -0.01 1.08 16 26 H 0.27 6.78 8.31 -40.82 -0.34 6.45 16 27 H 0.38 10.09 7.46 45.56 0.34 10.43 16 28 H 0.07 1.60 7.84 -51.93 -0.41 1.19 16 29 H 0.07 1.74 7.98 -51.93 -0.41 1.32 16 30 H 0.04 0.71 6.22 -51.92 -0.32 0.38 16 31 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 34 H 0.14 1.22 7.15 -52.49 -0.38 0.84 16 35 H 0.08 1.79 8.14 -51.93 -0.42 1.36 16 36 H 0.06 1.41 5.45 -51.93 -0.28 1.12 16 LS Contribution 312.86 15.07 4.71 4.71 Total: -1.00 -28.54 312.86 -6.27 -34.81 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -2.70 Total: 8.55 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -2.88 Total: -3.97 kcal Atomic # 7 Polarization: -33.56 SS G_CDS: -0.06 Total: -33.62 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -0.46 Total: -15.85 kcal Atomic # 9 Polarization: -10.44 SS G_CDS: 0.14 Total: -10.30 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.54 -6.27 -34.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771973719.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.543 kcal (2) G-P(sol) polarization free energy of solvation -28.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds