Wall clock time and date at job start Tue Mar 31 2020 12:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 119.99880 * 2 1 4 4 H 1.48495 * 109.46963 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46763 * 299.99494 * 3 2 1 6 6 H 1.48499 * 109.47471 * 59.99468 * 3 2 1 7 7 C 1.37875 * 119.99746 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99450 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00143 * 0.02562 * 7 2 1 10 10 O 1.42897 * 110.64667 * 298.30326 * 9 7 2 11 11 C 1.54594 * 110.72544 * 61.45627 * 9 7 2 12 12 C 1.53989 * 105.14167 * 140.49066 * 11 9 7 13 13 N 1.47895 * 107.06068 * 1.22404 * 12 11 9 14 14 C 1.39844 * 111.00489 * 214.15514 * 13 12 11 15 15 C 1.39125 * 120.07634 * 61.89085 * 14 13 12 16 16 F 1.35097 * 120.05627 * 0.02562 * 15 14 13 17 17 C 1.38238 * 119.88462 * 179.77445 * 15 14 13 18 18 C 1.38337 * 120.04895 * 0.50345 * 17 15 14 19 19 C 1.38232 * 120.16017 * 359.74865 * 18 17 15 20 20 C 1.38190 * 120.11235 * 359.97438 * 19 18 17 21 21 C 1.50699 * 120.02596 * 180.02562 * 20 19 18 22 22 F 1.39908 * 109.46824 * 1.12580 * 21 20 19 23 23 F 1.39896 * 109.46945 * 121.12024 * 21 20 19 24 24 F 1.39902 * 109.47684 * 241.12654 * 21 20 19 25 25 C 1.48531 * 105.82065 * 334.67016 * 13 12 11 26 26 H 0.96995 * 119.99942 * 0.02562 * 1 2 3 27 27 H 0.96693 * 114.00218 * 61.69881 * 10 9 7 28 28 H 1.09006 * 110.31145 * 21.57454 * 11 9 7 29 29 H 1.09004 * 110.30969 * 259.41151 * 11 9 7 30 30 H 1.09008 * 109.91945 * 241.86817 * 12 11 9 31 31 H 1.09005 * 110.08340 * 120.67411 * 12 11 9 32 32 H 1.07991 * 119.97847 * 180.27778 * 17 15 14 33 33 H 1.07998 * 119.91788 * 179.77109 * 18 17 15 34 34 H 1.08002 * 119.93891 * 179.97438 * 19 18 17 35 35 H 1.09001 * 110.67257 * 157.63688 * 25 13 12 36 36 H 1.09000 * 110.66885 * 280.77428 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8904 2.3966 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 0.4496 -2.6182 1.1776 11 6 0.3796 -2.6277 -1.2699 12 6 0.5040 -4.1024 -1.6954 13 7 1.3715 -4.7694 -0.7004 14 6 2.1518 -5.7623 -1.3012 15 6 3.0697 -5.4243 -2.2905 16 9 3.2093 -4.1360 -2.6723 17 6 3.8423 -6.4083 -2.8784 18 6 3.6955 -7.7282 -2.4910 19 6 2.7804 -8.0669 -1.5119 20 6 2.0086 -7.0878 -0.9157 21 6 1.0119 -7.4592 0.1519 22 9 1.0684 -8.8379 0.3832 23 9 1.3177 -6.7753 1.3334 24 9 -0.2753 -7.1094 -0.2697 25 6 2.2241 -3.6985 -0.1239 26 1 -0.4850 0.8400 -0.0004 27 1 -0.2286 -1.9342 1.2625 28 1 0.7579 -1.9740 -2.0560 29 1 -0.6586 -2.3857 -1.0427 30 1 0.9566 -4.1666 -2.6850 31 1 -0.4791 -4.5732 -1.7059 32 1 4.5585 -6.1471 -3.6433 33 1 4.2976 -8.4958 -2.9543 34 1 2.6684 -9.0985 -1.2124 35 1 2.6003 -3.9919 0.8561 36 1 3.0471 -3.4579 -0.7969 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771973719.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:08 Heat of formation + Delta-G solvation = -218.552665 kcal Electronic energy + Delta-G solvation = -28524.362314 eV Core-core repulsion = 23893.670727 eV Total energy + Delta-G solvation = -4630.691588 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.094 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -51.04036 -50.19398 -48.58538 -48.46916 -41.10104 -39.35762 -36.59745 -34.19719 -33.15069 -32.20688 -29.98689 -29.56987 -27.09077 -26.46940 -23.95865 -23.14201 -22.05744 -21.54639 -19.69439 -19.45682 -19.35535 -19.03855 -17.94595 -17.56636 -17.22428 -16.92213 -16.88465 -16.45187 -15.77106 -15.63215 -15.41823 -15.33120 -15.01557 -14.89472 -14.66944 -14.63386 -14.50130 -14.35969 -14.06856 -13.76016 -13.55193 -13.29213 -13.22972 -13.03565 -12.81585 -12.63242 -12.48835 -12.31267 -12.23431 -11.80916 -11.20093 -10.64732 -10.29560 -10.16381 -9.79758 -9.65986 -8.24067 -6.39997 -0.28724 -0.09886 1.37864 1.40911 1.51768 1.69438 2.22838 2.36056 2.64122 2.80692 2.99795 3.02337 3.33674 3.49123 3.70057 3.82563 3.87425 4.06273 4.12919 4.15140 4.25879 4.34481 4.58371 4.62439 4.76760 4.89003 4.94638 5.05070 5.10711 5.12293 5.36410 5.49085 5.54444 5.57222 5.76743 6.08674 6.18993 6.64815 7.31448 7.44029 8.82107 Molecular weight = 319.09amu Principal moments of inertia in cm(-1) A = 0.019148 B = 0.004948 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.958000 B = 5657.237665 C = 6535.222399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.032 3.968 3 Si 0.961 3.039 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.278 1.278 7 C -0.560 4.560 8 H 0.053 0.947 9 C 0.245 3.755 10 O -0.589 6.589 11 C -0.114 4.114 12 C 0.051 3.949 13 N -0.489 5.489 14 C 0.078 3.922 15 C 0.038 3.962 16 F -0.141 7.141 17 C -0.106 4.106 18 C -0.079 4.079 19 C -0.071 4.071 20 C -0.157 4.157 21 C 0.519 3.481 22 F -0.173 7.173 23 F -0.182 7.182 24 F -0.182 7.182 25 C 0.062 3.938 26 H 0.270 0.730 27 H 0.373 0.627 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.077 0.923 32 H 0.172 0.828 33 H 0.194 0.806 34 H 0.176 0.824 35 H 0.063 0.937 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.569 -17.491 -7.350 20.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.169 4.169 3 Si 0.786 3.214 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.204 1.204 7 C -0.598 4.598 8 H 0.071 0.929 9 C 0.205 3.795 10 O -0.396 6.396 11 C -0.153 4.153 12 C -0.074 4.074 13 N -0.210 5.210 14 C -0.018 4.018 15 C 0.017 3.983 16 F -0.119 7.119 17 C -0.125 4.125 18 C -0.096 4.096 19 C -0.089 4.089 20 C -0.159 4.159 21 C 0.465 3.535 22 F -0.155 7.155 23 F -0.163 7.163 24 F -0.163 7.163 25 C -0.064 4.064 26 H 0.079 0.921 27 H 0.221 0.779 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.095 0.905 32 H 0.189 0.811 33 H 0.211 0.789 34 H 0.193 0.807 35 H 0.081 0.919 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.442 -18.098 -6.828 20.388 hybrid contribution -0.097 2.491 -0.296 2.510 sum 6.346 -15.607 -7.123 18.292 Atomic orbital electron populations 1.69824 1.06835 1.28186 1.50089 1.25683 0.95832 1.02245 0.93173 0.85465 0.78867 0.79200 0.77820 1.19604 1.20184 1.20363 1.21788 0.93385 0.91932 1.52706 0.92913 1.19500 0.87064 0.90857 0.82053 1.86152 1.51557 1.55971 1.45943 1.22680 1.00517 0.92683 0.99387 1.22895 0.97017 0.94856 0.92673 1.62423 1.18261 1.11094 1.29243 1.19167 0.95022 0.93194 0.94391 1.18725 1.00878 0.79871 0.98843 1.91490 1.94889 1.35672 1.89863 1.21765 0.98251 0.92479 0.99993 1.21541 0.97068 0.95690 0.95350 1.21474 0.93048 0.99801 0.94584 1.19897 1.01694 0.93531 1.00764 1.18032 0.80344 0.73852 0.81313 1.93143 1.96395 1.30781 1.95137 1.93221 1.92924 1.80046 1.50149 1.93188 1.41232 1.91936 1.89940 1.23221 0.94962 0.89746 0.98460 0.92094 0.77870 0.93289 0.92835 0.93314 0.90481 0.81051 0.78854 0.80711 0.91883 0.91741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.71 11.00 21.45 0.24 -49.47 16 2 C 0.03 1.70 5.28 84.65 0.45 2.15 16 3 Si 0.96 42.94 29.54 68.60 2.03 44.96 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 6 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.56 -31.07 8.15 25.60 0.21 -30.86 16 8 H 0.05 2.93 7.78 -2.91 -0.02 2.91 16 9 C 0.25 12.83 0.95 -10.33 -0.01 12.82 16 10 O -0.59 -32.81 13.09 -148.98 -1.95 -34.76 16 11 C -0.11 -5.54 5.26 31.47 0.17 -5.37 16 12 C 0.05 2.12 6.23 86.45 0.54 2.66 16 13 N -0.49 -20.12 4.02 -682.52 -2.75 -22.86 16 14 C 0.08 2.62 4.74 38.21 0.18 2.80 16 15 C 0.04 1.12 6.24 22.48 0.14 1.26 16 16 F -0.14 -4.94 13.47 44.97 0.61 -4.33 16 17 C -0.11 -1.95 10.02 22.29 0.22 -1.73 16 18 C -0.08 -1.02 10.04 22.29 0.22 -0.79 16 19 C -0.07 -1.23 9.43 22.26 0.21 -1.02 16 20 C -0.16 -4.33 5.39 -19.74 -0.11 -4.44 16 21 C 0.52 15.93 2.97 71.24 0.21 16.14 16 22 F -0.17 -4.31 15.97 44.97 0.72 -3.59 16 23 F -0.18 -6.68 16.82 44.97 0.76 -5.93 16 24 F -0.18 -6.24 16.95 44.97 0.76 -5.47 16 25 C 0.06 2.87 5.39 86.65 0.47 3.34 16 26 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 27 H 0.37 20.92 7.46 -74.06 -0.55 20.37 16 28 H 0.05 2.48 7.84 -2.38 -0.02 2.46 16 29 H 0.05 2.73 7.98 -2.39 -0.02 2.71 16 30 H 0.05 1.88 6.22 -2.38 -0.01 1.86 16 31 H 0.08 3.06 8.14 -2.38 -0.02 3.04 16 32 H 0.17 2.12 8.06 -2.91 -0.02 2.09 16 33 H 0.19 0.62 8.06 -2.91 -0.02 0.59 16 34 H 0.18 1.98 7.15 -2.91 -0.02 1.96 16 35 H 0.06 3.04 8.14 -2.39 -0.02 3.02 16 36 H 0.06 2.94 5.45 -2.39 -0.01 2.93 16 Total: -1.00 -65.33 312.86 3.91 -61.42 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: 0.60 Total: 23.08 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: 2.90 Total: -3.04 kcal Atomic # 7 Polarization: -69.83 SS G_CDS: -2.51 Total: -72.34 kcal Atomic # 8 Polarization: -32.81 SS G_CDS: -1.95 Total: -34.76 kcal Atomic # 9 Polarization: -22.17 SS G_CDS: 2.84 Total: -19.33 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Total: -65.33 3.91 -61.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771973719.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.137 kcal (2) G-P(sol) polarization free energy of solvation -65.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds