Wall clock time and date at job start Tue Mar 31 2020 12:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 H 1.08000 * 119.99792 * 239.99917 * 4 2 1 6 6 C 1.37878 * 119.99902 * 59.99463 * 4 2 1 7 7 N 1.31515 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99745 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47438 * 0.02562 * 8 6 4 10 10 H 1.48491 * 109.47045 * 120.00577 * 8 6 4 11 11 H 1.48501 * 109.46950 * 240.00369 * 8 6 4 12 12 N 1.46899 * 109.47254 * 120.00004 * 2 1 3 13 13 C 1.46904 * 110.99770 * 58.95488 * 12 2 1 14 14 C 1.46895 * 111.00230 * 295.00304 * 12 2 1 15 15 C 1.50700 * 109.47089 * 190.00004 * 14 12 2 16 16 C 1.38306 * 119.91690 * 269.71682 * 15 14 12 17 17 C 1.38081 * 120.07524 * 179.76702 * 16 15 14 18 18 C 1.38974 * 119.91944 * 0.51238 * 17 16 15 19 19 S 1.76203 * 120.07768 * 179.72441 * 18 17 16 20 20 C 1.81397 * 103.00360 * 0.02562 * 19 18 17 21 21 F 1.39903 * 109.46536 * 60.00071 * 20 19 18 22 22 F 1.39892 * 109.47468 * 179.97438 * 20 19 18 23 23 F 1.39900 * 109.47273 * 300.00361 * 20 19 18 24 24 C 1.38969 * 119.84253 * 359.74516 * 18 17 16 25 25 C 1.38076 * 119.91945 * 0.02562 * 24 18 17 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 28 28 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 29 29 H 0.96999 * 120.00073 * 179.97438 * 7 6 4 30 30 H 1.08992 * 109.47139 * 59.99870 * 13 12 2 31 31 H 1.08998 * 109.46871 * 180.02562 * 13 12 2 32 32 H 1.09004 * 109.46908 * 299.99719 * 13 12 2 33 33 H 1.09002 * 109.47046 * 309.99881 * 14 12 2 34 34 H 1.09000 * 109.47644 * 69.99406 * 14 12 2 35 35 H 1.07996 * 119.96259 * 0.02562 * 16 15 14 36 36 H 1.07998 * 120.04136 * 180.25789 * 17 16 15 37 37 H 1.08003 * 120.03970 * 179.97438 * 24 18 17 38 38 H 1.07997 * 119.96181 * 179.97438 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 3.1454 -2.2876 -3.6039 10 1 1.1659 -1.5865 -4.8160 11 1 3.1464 -0.1873 -4.8165 12 7 2.0197 -0.6925 1.1994 13 6 1.5283 -2.0761 1.2459 14 6 1.6487 0.0391 2.4180 15 6 2.3679 -0.5573 3.6005 16 6 1.7804 -1.5816 4.3204 17 6 2.4386 -2.1336 5.4015 18 6 3.6882 -1.6515 5.7722 19 16 4.5286 -2.3480 7.1555 20 6 3.3753 -3.6230 7.7341 21 9 3.1584 -4.5538 6.7123 22 9 3.9183 -4.2722 8.8480 23 9 2.1601 -3.0269 8.0877 24 6 4.2731 -0.6185 5.0497 25 6 3.6112 -0.0745 3.9669 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3635 0.5138 -0.8899 29 1 0.7092 1.1618 -3.4843 30 1 1.8762 -2.6150 0.3647 31 1 1.9053 -2.5656 2.1439 32 1 0.4384 -2.0742 1.2639 33 1 1.9297 1.0869 2.3125 34 1 0.5722 -0.0345 2.5726 35 1 0.8075 -1.9530 4.0342 36 1 1.9811 -2.9363 5.9607 37 1 5.2439 -0.2411 5.3353 38 1 4.0649 0.7285 3.4052 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093090939.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:22 Heat of formation + Delta-G solvation = -114.006643 kcal Electronic energy + Delta-G solvation = -24218.345609 eV Core-core repulsion = 20158.400653 eV Total energy + Delta-G solvation = -4059.944956 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.091 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.52207 -49.12702 -49.04782 -40.58006 -38.59602 -34.95124 -32.93485 -32.14589 -30.25549 -28.37594 -27.71994 -27.17747 -25.42358 -23.82214 -22.64497 -20.96390 -20.69958 -20.02871 -19.90236 -18.35546 -18.23545 -17.15600 -16.60026 -16.53983 -16.11413 -15.92749 -15.90181 -15.47702 -15.44899 -15.26548 -15.16105 -15.07011 -14.91712 -14.41727 -14.28765 -14.04623 -13.88789 -13.38633 -12.96813 -12.87233 -12.66143 -12.63671 -12.37803 -12.33592 -12.09096 -11.99475 -11.84389 -11.56194 -11.05248 -10.84579 -10.48756 -10.02183 -8.99844 -8.79453 -8.09917 -6.20187 -1.14992 0.00593 0.32042 0.42931 1.41745 1.44537 1.55507 1.80388 2.42507 2.53349 2.61402 2.63004 3.19746 3.54204 3.70262 3.80975 3.89031 4.22955 4.34777 4.52801 4.56675 4.63451 4.69278 4.79550 4.87840 4.90796 4.99277 5.07348 5.14229 5.19977 5.23296 5.55534 5.62888 5.72991 5.79213 5.82340 6.19761 6.47583 6.73045 6.93533 7.49119 8.96149 Molecular weight = 319.09amu Principal moments of inertia in cm(-1) A = 0.027654 B = 0.002667 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.259793 B =10497.653631 C =10624.514079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.216 3.784 3 H 0.011 0.989 4 C -0.513 4.513 5 H 0.056 0.944 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.956 3.044 9 H -0.269 1.269 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.537 5.537 13 C 0.038 3.962 14 C 0.089 3.911 15 C -0.060 4.060 16 C -0.097 4.097 17 C -0.126 4.126 18 C -0.125 4.125 19 S -0.004 6.004 20 C 0.450 3.550 21 F -0.167 7.167 22 F -0.147 7.147 23 F -0.166 7.166 24 C -0.079 4.079 25 C -0.087 4.087 26 H 0.031 0.969 27 H 0.028 0.972 28 H 0.061 0.939 29 H 0.261 0.739 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.019 0.981 33 H 0.076 0.924 34 H 0.040 0.960 35 H 0.133 0.867 36 H 0.128 0.872 37 H 0.155 0.845 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.031 -5.984 21.781 23.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.109 3.891 3 H 0.029 0.971 4 C -0.552 4.552 5 H 0.074 0.926 6 C -0.186 4.186 7 N -0.560 5.560 8 Si 0.782 3.218 9 H -0.193 1.193 10 H -0.208 1.208 11 H -0.207 1.207 12 N -0.260 5.260 13 C -0.110 4.110 14 C -0.039 4.039 15 C -0.062 4.062 16 C -0.118 4.118 17 C -0.149 4.149 18 C -0.238 4.238 19 S 0.231 5.769 20 C 0.288 3.712 21 F -0.149 7.149 22 F -0.128 7.128 23 F -0.148 7.148 24 C -0.102 4.102 25 C -0.107 4.107 26 H 0.050 0.950 27 H 0.047 0.953 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.038 0.962 33 H 0.095 0.905 34 H 0.058 0.942 35 H 0.151 0.849 36 H 0.145 0.855 37 H 0.172 0.828 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 6.499 -5.746 22.201 23.836 hybrid contribution -2.223 -0.705 -1.542 2.796 sum 4.276 -6.451 20.659 22.061 Atomic orbital electron populations 1.22215 1.00336 0.99205 1.00171 1.19083 0.90010 0.93110 0.86938 0.97090 1.21415 1.30429 1.12382 0.90924 0.92602 1.25644 0.95448 0.95801 1.01706 1.70008 1.37964 1.24151 1.23902 0.85536 0.78035 0.78681 0.79548 1.19338 1.20824 1.20748 1.62278 1.59704 1.02569 1.01451 1.22239 0.97069 0.90391 1.01342 1.21051 0.96771 0.97910 0.88135 1.20027 0.95364 0.95789 0.95055 1.21056 1.00478 0.95719 0.94502 1.21314 0.93989 1.00805 0.98808 1.21542 0.98802 1.02891 1.00534 1.86492 1.21477 1.36324 1.32637 1.22963 0.83841 0.86149 0.78235 1.93335 1.95069 1.67999 1.58513 1.93266 1.85253 1.81885 1.52413 1.93327 1.46631 1.82799 1.92002 1.20869 1.00536 0.94361 0.94408 1.21175 0.93688 1.00113 0.95727 0.94989 0.95323 0.92048 0.93016 0.92849 0.91386 0.96223 0.90538 0.94212 0.84869 0.85460 0.82765 0.84006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.50 8.28 71.98 0.60 -6.90 16 2 C 0.22 10.54 2.34 44.17 0.10 10.64 16 3 H 0.01 0.61 8.03 -2.39 -0.02 0.59 16 4 C -0.51 -27.63 7.94 25.60 0.20 -27.42 16 5 H 0.06 3.03 6.75 -2.91 -0.02 3.01 16 6 C 0.01 0.68 5.30 84.65 0.45 1.12 16 7 N -0.92 -51.99 11.32 21.45 0.24 -51.74 16 8 Si 0.96 43.25 29.54 68.60 2.03 45.28 16 9 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 12 N -0.54 -21.79 4.73 -906.06 -4.29 -26.08 16 13 C 0.04 1.42 8.55 127.69 1.09 2.51 16 14 C 0.09 2.94 4.55 85.56 0.39 3.33 16 15 C -0.06 -1.67 4.89 -19.83 -0.10 -1.77 16 16 C -0.10 -2.47 7.90 22.25 0.18 -2.29 16 17 C -0.13 -2.94 8.69 22.41 0.19 -2.74 16 18 C -0.13 -2.72 6.11 22.62 0.14 -2.58 16 19 S 0.00 -0.07 21.96 -56.49 -1.24 -1.31 16 20 C 0.45 8.30 2.98 113.37 0.34 8.64 16 21 F -0.17 -3.39 15.63 44.97 0.70 -2.68 16 22 F -0.15 -2.58 17.36 44.97 0.78 -1.80 16 23 F -0.17 -3.19 15.62 44.97 0.70 -2.49 16 24 C -0.08 -1.66 9.79 22.41 0.22 -1.44 16 25 C -0.09 -2.13 9.69 22.25 0.22 -1.92 16 26 H 0.03 1.45 6.38 -2.39 -0.02 1.43 16 27 H 0.03 1.18 6.75 -2.39 -0.02 1.16 16 28 H 0.06 3.24 6.07 -2.39 -0.01 3.22 16 29 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 30 H 0.05 2.20 6.53 -2.39 -0.02 2.19 16 31 H 0.07 2.21 5.90 -2.39 -0.01 2.20 16 32 H 0.02 0.72 6.28 -2.38 -0.01 0.70 16 33 H 0.08 2.53 7.94 -2.39 -0.02 2.51 16 34 H 0.04 1.30 6.88 -2.39 -0.02 1.28 16 35 H 0.13 3.15 8.00 -2.91 -0.02 3.13 16 36 H 0.13 2.73 4.55 -2.91 -0.01 2.72 16 37 H 0.15 2.43 8.06 -2.91 -0.02 2.40 16 38 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -57.52 328.99 4.05 -53.47 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: 1.10 Total: 8.17 kcal Atomic # 6 Polarization: -24.83 SS G_CDS: 4.02 Total: -20.81 kcal Atomic # 7 Polarization: -73.78 SS G_CDS: -4.05 Total: -77.82 kcal Atomic # 9 Polarization: -9.16 SS G_CDS: 2.19 Total: -6.98 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 16 Polarization: -0.07 SS G_CDS: -1.24 Total: -1.31 kcal Total: -57.52 4.05 -53.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093090939.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.536 kcal (2) G-P(sol) polarization free energy of solvation -57.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds