Wall clock time and date at job start Tue Mar 31 2020 13:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00196 * 2 1 4 4 H 1.48499 * 109.47411 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46956 * 300.00322 * 3 2 1 6 6 H 1.48500 * 109.47225 * 59.99814 * 3 2 1 7 7 C 1.37877 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00195 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00187 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47248 * 180.02562 * 9 7 2 11 11 S 1.81408 * 109.46804 * 180.02562 * 10 9 7 12 12 O 1.42098 * 110.54164 * 68.37607 * 11 10 9 13 13 O 1.42095 * 110.53933 * 291.62078 * 11 10 9 14 14 N 1.65601 * 104.44467 * 179.97438 * 11 10 9 15 15 C 1.47066 * 120.17970 * 107.26150 * 14 11 10 16 16 C 1.53203 * 109.61825 * 244.82494 * 15 14 11 17 17 S 1.81797 * 108.91553 * 302.43504 * 16 15 14 18 18 C 1.81641 * 102.18397 * 54.35371 * 17 16 15 19 19 H 1.08999 * 109.59569 * 65.00142 * 18 17 16 20 20 C 1.52920 * 110.14017 * 185.64943 * 18 17 16 21 21 C 1.53082 * 109.21818 * 179.97438 * 20 18 17 22 22 C 1.52952 * 109.68097 * 300.18653 * 21 20 18 23 23 C 1.52125 * 109.81019 * 59.22921 * 22 21 20 24 24 C 1.46238 * 119.77334 * 286.93315 * 14 11 10 25 25 H 1.08994 * 109.38834 * 234.48977 * 24 14 11 26 26 H 0.97005 * 120.00365 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.46929 * 59.99752 * 9 7 2 28 28 H 1.08999 * 109.47030 * 300.00447 * 9 7 2 29 29 H 1.08994 * 109.47449 * 60.00136 * 10 9 7 30 30 H 1.09006 * 109.46891 * 299.99582 * 10 9 7 31 31 H 1.08999 * 109.62083 * 124.67641 * 15 14 11 32 32 H 1.09007 * 109.31207 * 4.77204 * 15 14 11 33 33 H 1.09000 * 109.56522 * 182.60968 * 16 15 14 34 34 H 1.09004 * 109.65924 * 62.31998 * 16 15 14 35 35 H 1.08998 * 109.51144 * 299.83789 * 20 18 17 36 36 H 1.08995 * 109.51525 * 59.99933 * 20 18 17 37 37 H 1.09009 * 109.43145 * 60.25050 * 21 20 18 38 38 H 1.08994 * 109.43533 * 180.16174 * 21 20 18 39 39 H 1.09000 * 109.43485 * 179.53073 * 22 21 20 40 40 H 1.09002 * 109.43266 * 299.43975 * 22 21 20 41 41 H 1.08997 * 109.62720 * 180.29256 * 23 22 21 42 42 H 1.09001 * 108.88545 * 60.46626 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 16 1.3382 -5.2330 -0.0013 12 8 0.6647 -5.4193 -1.2386 13 8 0.6640 -5.4200 1.2354 14 7 2.5205 -6.3926 -0.0020 15 6 2.7842 -7.1803 1.2117 16 6 4.1927 -6.8716 1.7292 17 16 5.3963 -7.2380 0.4169 18 6 4.7612 -6.2537 -0.9714 19 1 4.8258 -5.1933 -0.7274 20 6 5.5737 -6.5398 -2.2348 21 6 5.0211 -5.7010 -3.3900 22 6 3.5536 -6.0589 -3.6304 23 6 2.7453 -5.7954 -2.3689 24 6 3.2977 -6.6366 -1.2164 25 1 3.2390 -7.6932 -1.4775 26 1 -0.4851 0.8401 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8896 29 1 2.8720 -3.6043 0.8894 30 1 2.8719 -3.6043 -0.8906 31 1 2.7067 -8.2430 0.9823 32 1 2.0519 -6.9206 1.9762 33 1 4.4047 -7.4898 2.6016 34 1 4.2604 -5.8187 2.0028 35 1 6.6179 -6.2783 -2.0632 36 1 5.4988 -7.5982 -2.4841 37 1 5.1002 -4.6429 -3.1402 38 1 5.5961 -5.9044 -4.2934 39 1 3.1619 -5.4537 -4.4479 40 1 3.4757 -7.1144 -3.8910 41 1 1.7013 -6.0562 -2.5418 42 1 2.8199 -4.7376 -2.1166 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176778943.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:09 Heat of formation + Delta-G solvation = -98.640976 kcal Electronic energy + Delta-G solvation = -24481.637519 eV Core-core repulsion = 21099.659560 eV Total energy + Delta-G solvation = -3381.977959 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.106 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.34315 -38.40633 -37.14024 -36.76264 -35.95382 -33.23921 -32.23967 -31.75646 -29.56008 -27.69374 -24.43619 -24.19241 -23.66704 -22.79106 -20.98695 -20.11921 -19.03185 -18.26058 -17.68382 -17.47669 -17.12614 -16.57723 -16.39953 -15.84868 -15.63496 -15.39220 -15.21373 -14.79532 -14.54798 -14.42769 -14.22310 -13.85291 -13.73489 -13.41510 -13.30850 -13.14577 -13.00774 -12.85660 -12.79584 -12.53890 -12.44332 -12.36768 -12.18193 -12.01521 -11.81306 -11.47138 -11.30517 -11.22839 -11.10494 -10.68670 -10.60856 -10.20347 -8.65951 -8.29610 -6.43704 -0.81998 0.73598 1.38507 1.38662 1.50617 1.51851 1.55806 2.34749 2.67686 3.03959 3.09024 3.28794 3.51147 3.77105 3.83322 3.89550 3.96590 4.01954 4.11217 4.15199 4.31449 4.35413 4.36837 4.44999 4.53986 4.66179 4.74865 4.84591 4.91977 4.94854 4.99371 5.09475 5.18584 5.21036 5.21964 5.28827 5.47210 5.49394 5.54563 5.64575 6.01907 6.69342 7.26746 8.82861 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.014165 B = 0.004811 C = 0.004481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.186226 B = 5818.752311 C = 6246.649358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.971 3.029 4 H -0.257 1.257 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.537 4.537 8 H 0.072 0.928 9 C 0.026 3.974 10 C -0.591 4.591 11 S 2.608 3.392 12 O -0.976 6.976 13 O -0.993 6.993 14 N -0.997 5.997 15 C 0.109 3.891 16 C -0.101 4.101 17 S -0.264 6.264 18 C -0.066 4.066 19 H 0.083 0.917 20 C -0.090 4.090 21 C -0.118 4.118 22 C -0.108 4.108 23 C -0.186 4.186 24 C 0.164 3.836 25 H 0.108 0.892 26 H 0.268 0.732 27 H 0.009 0.991 28 H 0.004 0.996 29 H 0.133 0.867 30 H 0.139 0.861 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.141 0.859 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.058 0.942 38 H 0.091 0.909 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.114 0.886 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.947 -16.533 -3.304 21.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.199 4.199 3 Si 0.795 3.205 4 H -0.181 1.181 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.576 4.576 8 H 0.091 0.909 9 C -0.013 4.013 10 C -0.723 4.723 11 S 2.707 3.293 12 O -0.966 6.966 13 O -0.983 6.983 14 N -0.834 5.834 15 C -0.017 4.017 16 C -0.250 4.250 17 S -0.034 6.034 18 C -0.196 4.196 19 H 0.102 0.898 20 C -0.129 4.129 21 C -0.157 4.157 22 C -0.146 4.146 23 C -0.226 4.226 24 C 0.056 3.944 25 H 0.126 0.874 26 H 0.077 0.923 27 H 0.027 0.973 28 H 0.023 0.977 29 H 0.151 0.849 30 H 0.157 0.843 31 H 0.125 0.875 32 H 0.124 0.876 33 H 0.159 0.841 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.077 0.923 38 H 0.110 0.890 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.132 0.868 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 12.781 -17.334 -3.168 21.768 hybrid contribution -0.626 2.332 0.293 2.432 sum 12.155 -15.002 -2.876 19.521 Atomic orbital electron populations 1.70095 1.08010 1.28326 1.50780 1.26074 0.95828 1.03741 0.94302 0.85304 0.79126 0.78145 0.77950 1.18094 1.20156 1.20287 1.21480 0.93795 0.90730 1.51623 0.90935 1.18774 0.93350 0.92827 0.96320 1.30560 1.12842 1.17212 1.11665 1.04945 0.75141 0.76203 0.72997 1.93486 1.73492 1.85013 1.44588 1.93459 1.72665 1.85595 1.46572 1.57658 1.55008 1.51809 1.18962 1.21858 0.96331 0.97604 0.85899 1.23943 0.95302 1.06230 0.99558 1.86701 1.41155 1.65034 1.10494 1.23768 0.97481 1.01364 0.97027 0.89836 1.21348 0.98741 1.01882 0.90917 1.21630 0.95772 0.99721 0.98552 1.21299 0.94539 1.03121 0.95611 1.22838 1.04104 0.99296 0.96385 1.21207 0.88625 1.02182 0.82354 0.87432 0.92306 0.97299 0.97718 0.84855 0.84328 0.87511 0.87635 0.84098 0.89822 0.90209 0.89643 0.92349 0.89029 0.90787 0.89889 0.86793 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.40 13.29 21.45 0.28 -56.11 16 2 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 3 Si 0.97 43.09 29.54 68.60 2.03 45.12 16 4 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 5 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.54 -29.70 9.11 25.60 0.23 -29.47 16 8 H 0.07 3.74 7.74 -2.91 -0.02 3.72 16 9 C 0.03 1.37 4.98 29.85 0.15 1.51 16 10 C -0.59 -22.80 5.84 71.98 0.42 -22.38 16 11 S 2.61 93.92 4.83 -56.49 -0.27 93.65 16 12 O -0.98 -38.92 13.91 -127.65 -1.78 -40.70 16 13 O -0.99 -40.99 16.19 -127.65 -2.07 -43.06 16 14 N -1.00 -26.11 3.03 -491.85 -1.49 -27.59 16 15 C 0.11 2.33 6.30 86.34 0.54 2.87 16 16 C -0.10 -1.87 6.66 72.05 0.48 -1.39 16 17 S -0.26 -5.27 21.70 -56.49 -1.23 -6.50 16 18 C -0.07 -1.34 2.55 30.65 0.08 -1.26 16 19 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 20 C -0.09 -1.43 5.27 30.60 0.16 -1.27 16 21 C -0.12 -1.87 5.92 30.61 0.18 -1.68 16 22 C -0.11 -1.99 5.89 30.29 0.18 -1.81 16 23 C -0.19 -4.71 3.62 30.30 0.11 -4.60 16 24 C 0.16 3.70 2.54 45.12 0.11 3.81 16 25 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.27 15.09 8.31 -92.70 -0.77 14.32 16 27 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 29 H 0.13 4.64 8.14 -2.39 -0.02 4.62 16 30 H 0.14 4.80 5.84 -2.39 -0.01 4.78 16 31 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.11 2.45 6.48 -2.38 -0.02 2.43 16 33 H 0.14 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.08 1.19 8.14 -2.39 -0.02 1.18 16 37 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 38 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.11 3.43 5.47 -5.19 -0.03 3.40 16 42 H 0.05 1.56 4.94 -2.39 -0.01 1.55 16 Total: -1.00 -70.63 340.69 -0.42 -71.06 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.99 Total: 19.41 kcal Atomic # 6 Polarization: -58.37 SS G_CDS: 3.11 Total: -55.26 kcal Atomic # 7 Polarization: -82.50 SS G_CDS: -1.20 Total: -83.71 kcal Atomic # 8 Polarization: -79.92 SS G_CDS: -3.84 Total: -83.76 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: 88.65 SS G_CDS: -1.50 Total: 87.15 kcal Total: -70.63 -0.42 -71.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176778943.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.585 kcal (2) G-P(sol) polarization free energy of solvation -70.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds