Wall clock time and date at job start Tue Mar 31 2020 12:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35836 * 117.00250 * 2 1 4 4 C 1.38894 * 119.91285 * 179.97438 * 3 2 1 5 5 C 1.37815 * 120.08898 * 179.97438 * 4 3 2 6 6 C 1.39634 * 119.90893 * 359.97438 * 5 4 3 7 7 C 1.47748 * 120.08610 * 179.97438 * 6 5 4 8 8 N 1.31262 * 125.73031 * 180.29392 * 7 6 5 9 9 C 1.34213 * 108.63526 * 180.13018 * 8 7 6 10 10 C 1.50705 * 126.07449 * 179.86337 * 9 8 7 11 11 S 1.81405 * 109.46754 * 269.68939 * 10 9 8 12 12 C 1.81399 * 102.99706 * 180.02562 * 11 10 9 13 13 C 1.53002 * 109.47162 * 180.02562 * 12 11 10 14 14 C 1.50706 * 109.46925 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00196 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99394 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00338 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99424 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47364 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47233 * 120.00158 * 18 16 14 21 21 H 1.48508 * 109.46883 * 239.99963 * 18 16 14 22 22 C 1.34495 * 107.84839 * 359.59936 * 9 8 7 23 23 O 1.34434 * 125.73124 * 359.97438 * 7 6 5 24 24 C 1.39634 * 119.82501 * 0.25639 * 6 5 4 25 25 C 1.37814 * 119.91252 * 359.49216 * 24 6 5 26 26 H 1.09004 * 109.47624 * 300.00662 * 1 2 3 27 27 H 1.09011 * 109.46790 * 59.99986 * 1 2 3 28 28 H 1.08999 * 109.47382 * 179.97438 * 1 2 3 29 29 H 1.08001 * 119.95229 * 359.94936 * 4 3 2 30 30 H 1.08002 * 120.04222 * 180.02562 * 5 4 3 31 31 H 1.09000 * 109.47022 * 149.69213 * 10 9 8 32 32 H 1.08998 * 109.46894 * 29.68768 * 10 9 8 33 33 H 1.09004 * 109.47089 * 299.99939 * 12 11 10 34 34 H 1.09004 * 109.47568 * 59.99949 * 12 11 10 35 35 H 1.09000 * 109.46497 * 299.99702 * 13 12 11 36 36 H 1.08996 * 109.46876 * 60.00092 * 13 12 11 37 37 H 0.96996 * 119.99730 * 179.97438 * 17 16 14 38 38 H 1.07998 * 126.36065 * 180.22080 * 22 9 8 39 39 H 1.07998 * 120.04501 * 179.72127 * 24 6 5 40 40 H 1.07999 * 119.96226 * 180.25189 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0457 1.2103 0.0000 4 6 3.4328 1.2808 0.0005 5 6 4.0623 2.5068 0.0000 6 6 3.3036 3.6790 -0.0016 7 6 3.9744 4.9954 -0.0016 8 7 3.3730 6.1622 0.0024 9 6 4.3070 7.1261 -0.0020 10 6 4.0497 8.6110 -0.0025 11 16 3.9493 9.2066 -1.7130 12 6 3.6420 10.9827 -1.5092 13 6 3.5295 11.6420 -2.8853 14 6 3.2736 13.1175 -2.7159 15 1 3.1983 13.5424 -1.7259 16 6 3.1356 13.9249 -3.8250 17 7 3.2268 13.4075 -5.0306 18 14 2.8191 15.7539 -3.6151 19 1 2.7607 16.0834 -2.1682 20 1 3.9176 16.5229 -4.2533 21 1 1.5280 16.1097 -4.2568 22 6 5.5132 6.5313 0.0001 23 8 5.3032 5.1995 0.0003 24 6 1.9093 3.6038 0.0027 25 6 1.2874 2.3740 -0.0020 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 4.0189 0.3736 0.0018 30 1 5.1410 2.5607 0.0000 31 1 4.8638 9.1209 0.5126 32 1 3.1099 8.8170 0.5098 33 1 2.7126 11.1299 -0.9591 34 1 4.4666 11.4331 -0.9565 35 1 4.4588 11.4949 -3.4357 36 1 2.7048 11.1917 -3.4375 37 1 3.1293 13.9755 -5.8108 38 1 6.4721 7.0282 0.0010 39 1 1.3190 4.5082 0.0060 40 1 0.2090 2.3149 -0.0028 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190899784.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:04 Heat of formation + Delta-G solvation = -0.089465 kcal Electronic energy + Delta-G solvation = -21992.871652 eV Core-core repulsion = 18479.723255 eV Total energy + Delta-G solvation = -3513.148396 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.36882 -40.50009 -37.89658 -35.28538 -33.67814 -32.55444 -31.52949 -30.86260 -30.20052 -27.97473 -27.12323 -25.21984 -23.80848 -23.12774 -21.58734 -21.28121 -20.67019 -18.66751 -17.65996 -16.82442 -16.52522 -16.50351 -16.19277 -16.14173 -15.44556 -14.85872 -14.74028 -14.49591 -14.13698 -14.02031 -13.72451 -13.55744 -13.22640 -13.15701 -12.74824 -12.48618 -12.36355 -12.08174 -11.79265 -11.54967 -11.28355 -11.10144 -11.04012 -10.63698 -10.56580 -10.19689 -9.75469 -9.65697 -9.48047 -9.22026 -9.04594 -8.42257 -8.12802 -7.13930 -6.05782 -4.10377 0.42389 0.93367 1.45332 2.07572 2.51364 2.78403 2.89482 3.22503 3.28428 3.36075 3.39800 3.45507 3.69905 4.35436 4.41864 4.42193 4.60246 4.67012 4.70462 4.74688 4.84449 5.00555 5.04134 5.15000 5.26390 5.29811 5.47694 5.53782 5.62614 5.72456 5.83658 5.90176 5.99786 6.05312 6.16723 6.18991 6.20552 6.73116 6.88167 7.57387 7.60514 7.65817 7.90706 8.27594 8.94911 9.53521 11.05046 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.024603 B = 0.001898 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.809271 B =14750.140896 C =15471.266855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.315 6.315 3 C 0.144 3.856 4 C -0.154 4.154 5 C -0.049 4.049 6 C -0.053 4.053 7 C 0.234 3.766 8 N -0.459 5.459 9 C 0.016 3.984 10 C -0.014 4.014 11 S -0.268 6.268 12 C -0.061 4.061 13 C 0.037 3.963 14 C -0.520 4.520 15 H 0.058 0.942 16 C 0.059 3.941 17 N -0.890 5.890 18 Si 0.897 3.103 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.283 1.283 22 C -0.055 4.055 23 O -0.197 6.197 24 C -0.027 4.027 25 C -0.210 4.210 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.102 0.898 29 H 0.139 0.861 30 H 0.139 0.861 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.026 0.974 36 H 0.027 0.973 37 H 0.262 0.738 38 H 0.221 0.779 39 H 0.144 0.856 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.625 -26.776 13.562 30.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.228 6.228 3 C 0.098 3.902 4 C -0.172 4.172 5 C -0.068 4.068 6 C -0.054 4.054 7 C 0.030 3.970 8 N -0.188 5.188 9 C -0.105 4.105 10 C -0.162 4.162 11 S -0.040 6.040 12 C -0.209 4.209 13 C -0.002 4.002 14 C -0.560 4.560 15 H 0.076 0.924 16 C -0.143 4.143 17 N -0.529 5.529 18 Si 0.724 3.276 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.128 4.128 23 O -0.084 6.084 24 C -0.046 4.046 25 C -0.229 4.229 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.120 0.880 29 H 0.157 0.843 30 H 0.157 0.843 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.045 0.955 36 H 0.045 0.955 37 H 0.072 0.928 38 H 0.237 0.763 39 H 0.161 0.839 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.088 -27.439 12.458 30.155 hybrid contribution 0.247 1.956 1.062 2.239 sum -0.842 -25.483 13.520 28.860 Atomic orbital electron populations 1.23138 0.77895 1.04258 1.01791 1.86066 1.21831 1.26802 1.88082 1.19258 0.92412 0.84294 0.94230 1.20301 0.91307 0.98450 1.07158 1.21037 1.00287 0.90265 0.95230 1.17146 0.92545 0.86187 1.09554 1.23630 0.77405 0.94312 1.01628 1.70531 1.33417 0.97208 1.17681 1.20903 0.88992 0.95389 1.05247 1.21458 1.05692 0.89801 0.99267 1.87217 1.95552 1.12876 1.08350 1.23732 1.02847 0.88575 1.05740 1.18911 0.98474 0.94539 0.88246 1.21137 1.49864 0.92226 0.92818 0.92356 1.25022 0.95185 0.98927 0.95189 1.69984 1.49642 1.35653 0.97608 0.86462 0.77891 0.84959 0.78241 1.19691 1.20903 1.20895 1.24880 1.01444 0.79189 1.07289 1.84488 1.27403 1.26376 1.70104 1.21005 0.92457 0.98167 0.92990 1.21198 1.00560 0.91615 1.09491 0.92302 0.92226 0.88007 0.84344 0.84319 0.88747 0.88661 0.91237 0.91265 0.95515 0.95486 0.92832 0.76261 0.83867 0.84480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 101.05 0.99 1.10 16 2 O -0.32 -2.49 10.49 -19.23 -0.20 -2.69 16 3 C 0.14 1.24 6.69 -39.09 -0.26 0.98 16 4 C -0.15 -1.27 9.97 -39.49 -0.39 -1.66 16 5 C -0.05 -0.44 9.71 -39.22 -0.38 -0.82 16 6 C -0.05 -0.59 5.87 -104.97 -0.62 -1.21 16 7 C 0.23 3.16 7.89 -13.91 -0.11 3.05 16 8 N -0.46 -7.06 10.91 -7.98 -0.09 -7.14 16 9 C 0.02 0.24 6.36 -82.87 -0.53 -0.29 16 10 C -0.01 -0.21 6.48 36.01 0.23 0.03 16 11 S -0.27 -5.13 21.72 -107.50 -2.33 -7.47 16 12 C -0.06 -1.28 5.88 37.16 0.22 -1.07 16 13 C 0.04 0.97 4.98 -27.88 -0.14 0.83 16 14 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 15 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 18 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 C -0.05 -0.67 12.08 29.41 0.36 -0.31 16 23 O -0.20 -2.50 10.52 3.90 0.04 -2.46 16 24 C -0.03 -0.27 9.68 -39.22 -0.38 -0.65 16 25 C -0.21 -1.76 9.02 -39.49 -0.36 -2.11 16 26 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 27 H 0.06 0.23 7.65 -51.92 -0.40 -0.17 16 28 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 30 H 0.14 1.04 7.90 -52.49 -0.41 0.62 16 31 H 0.09 1.15 8.14 -51.92 -0.42 0.73 16 32 H 0.09 1.38 8.14 -51.92 -0.42 0.96 16 33 H 0.07 1.41 8.14 -51.92 -0.42 0.99 16 34 H 0.07 1.36 8.14 -51.92 -0.42 0.94 16 35 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.22 1.84 8.06 -52.49 -0.42 1.42 16 39 H 0.14 1.49 7.83 -52.49 -0.41 1.08 16 40 H 0.14 0.83 6.28 -52.49 -0.33 0.50 16 LS Contribution 363.23 15.07 5.47 5.47 Total: -1.00 -33.43 363.23 -8.47 -41.89 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -5.30 Total: -2.50 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: -1.78 Total: -15.49 kcal Atomic # 7 Polarization: -33.85 SS G_CDS: 0.65 Total: -33.20 kcal Atomic # 8 Polarization: -4.99 SS G_CDS: -0.16 Total: -5.15 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -5.13 SS G_CDS: -2.33 Total: -7.47 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.43 -8.47 -41.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190899784.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.804 kcal (2) G-P(sol) polarization free energy of solvation -33.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds