Wall clock time and date at job start Tue Mar 31 2020 12:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35836 * 117.00250 * 2 1 4 4 C 1.38894 * 119.91285 * 179.97438 * 3 2 1 5 5 C 1.37815 * 120.08898 * 179.97438 * 4 3 2 6 6 C 1.39634 * 119.90893 * 359.97438 * 5 4 3 7 7 C 1.47748 * 120.08610 * 179.97438 * 6 5 4 8 8 N 1.31262 * 125.73031 * 180.29392 * 7 6 5 9 9 C 1.34213 * 108.63526 * 180.13018 * 8 7 6 10 10 C 1.50705 * 126.07449 * 179.86337 * 9 8 7 11 11 S 1.81405 * 109.46754 * 269.68939 * 10 9 8 12 12 C 1.81399 * 102.99706 * 180.02562 * 11 10 9 13 13 C 1.53002 * 109.47162 * 180.02562 * 12 11 10 14 14 C 1.50706 * 109.46925 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00196 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99394 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00338 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99424 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47364 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47233 * 120.00158 * 18 16 14 21 21 H 1.48508 * 109.46883 * 239.99963 * 18 16 14 22 22 C 1.34495 * 107.84839 * 359.59936 * 9 8 7 23 23 O 1.34434 * 125.73124 * 359.97438 * 7 6 5 24 24 C 1.39634 * 119.82501 * 0.25639 * 6 5 4 25 25 C 1.37814 * 119.91252 * 359.49216 * 24 6 5 26 26 H 1.09004 * 109.47624 * 300.00662 * 1 2 3 27 27 H 1.09011 * 109.46790 * 59.99986 * 1 2 3 28 28 H 1.08999 * 109.47382 * 179.97438 * 1 2 3 29 29 H 1.08001 * 119.95229 * 359.94936 * 4 3 2 30 30 H 1.08002 * 120.04222 * 180.02562 * 5 4 3 31 31 H 1.09000 * 109.47022 * 149.69213 * 10 9 8 32 32 H 1.08998 * 109.46894 * 29.68768 * 10 9 8 33 33 H 1.09004 * 109.47089 * 299.99939 * 12 11 10 34 34 H 1.09004 * 109.47568 * 59.99949 * 12 11 10 35 35 H 1.09000 * 109.46497 * 299.99702 * 13 12 11 36 36 H 1.08996 * 109.46876 * 60.00092 * 13 12 11 37 37 H 0.96996 * 119.99730 * 179.97438 * 17 16 14 38 38 H 1.07998 * 126.36065 * 180.22080 * 22 9 8 39 39 H 1.07998 * 120.04501 * 179.72127 * 24 6 5 40 40 H 1.07999 * 119.96226 * 180.25189 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0457 1.2103 0.0000 4 6 3.4328 1.2808 0.0005 5 6 4.0623 2.5068 0.0000 6 6 3.3036 3.6790 -0.0016 7 6 3.9744 4.9954 -0.0016 8 7 3.3730 6.1622 0.0024 9 6 4.3070 7.1261 -0.0020 10 6 4.0497 8.6110 -0.0025 11 16 3.9493 9.2066 -1.7130 12 6 3.6420 10.9827 -1.5092 13 6 3.5295 11.6420 -2.8853 14 6 3.2736 13.1175 -2.7159 15 1 3.1983 13.5424 -1.7259 16 6 3.1356 13.9249 -3.8250 17 7 3.2268 13.4075 -5.0306 18 14 2.8191 15.7539 -3.6151 19 1 2.7607 16.0834 -2.1682 20 1 3.9176 16.5229 -4.2533 21 1 1.5280 16.1097 -4.2568 22 6 5.5132 6.5313 0.0001 23 8 5.3032 5.1995 0.0003 24 6 1.9093 3.6038 0.0027 25 6 1.2874 2.3740 -0.0020 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 4.0189 0.3736 0.0018 30 1 5.1410 2.5607 0.0000 31 1 4.8638 9.1209 0.5126 32 1 3.1099 8.8170 0.5098 33 1 2.7126 11.1299 -0.9591 34 1 4.4666 11.4331 -0.9565 35 1 4.4588 11.4949 -3.4357 36 1 2.7048 11.1917 -3.4375 37 1 3.1293 13.9755 -5.8108 38 1 6.4721 7.0282 0.0010 39 1 1.3190 4.5082 0.0060 40 1 0.2090 2.3149 -0.0028 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190899784.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:03 Heat of formation + Delta-G solvation = -21.087989 kcal Electronic energy + Delta-G solvation = -21993.782216 eV Core-core repulsion = 18479.723255 eV Total energy + Delta-G solvation = -3514.058960 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.36074 -41.11773 -38.53208 -36.31887 -35.77491 -33.44449 -32.90788 -32.20997 -31.06876 -28.63968 -27.95241 -27.25042 -24.62892 -23.88010 -23.23451 -22.30784 -21.77833 -19.30087 -18.68155 -18.54268 -17.85011 -17.15471 -16.98913 -16.88062 -16.68721 -16.50731 -15.83268 -15.57166 -15.46798 -15.08477 -14.72337 -14.63805 -14.40312 -13.95147 -13.83986 -13.63748 -13.53784 -13.37717 -12.93670 -12.83495 -12.58383 -12.37875 -12.17947 -12.05732 -11.91544 -11.71890 -11.61147 -11.31375 -10.86463 -10.61782 -10.23536 -10.13652 -8.94543 -8.66553 -8.23292 -6.37002 -0.38001 0.25958 0.31201 0.99156 1.41247 1.41853 1.55291 1.59712 1.64491 1.92928 2.27510 2.40575 2.70568 2.77349 3.10063 3.54580 3.72697 3.79593 3.83577 4.10352 4.25205 4.27647 4.31324 4.38346 4.39809 4.41202 4.47069 4.51333 4.65128 4.74857 4.78764 4.87311 4.96024 4.98688 5.14508 5.26836 5.36235 5.38395 5.49229 5.54582 5.73791 6.10505 6.31034 6.60910 6.77821 7.32635 8.88766 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.024603 B = 0.001898 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.809271 B =14750.140896 C =15471.266855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.325 6.325 3 C 0.144 3.856 4 C -0.155 4.155 5 C -0.044 4.044 6 C -0.079 4.079 7 C 0.233 3.767 8 N -0.493 5.493 9 C -0.018 4.018 10 C 0.008 3.992 11 S -0.308 6.308 12 C -0.048 4.048 13 C 0.043 3.957 14 C -0.540 4.540 15 H 0.070 0.930 16 C -0.001 4.001 17 N -0.933 5.933 18 Si 0.974 3.026 19 H -0.258 1.258 20 H -0.277 1.277 21 H -0.279 1.279 22 C -0.035 4.035 23 O -0.197 6.197 24 C -0.037 4.037 25 C -0.208 4.208 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.122 0.878 29 H 0.159 0.841 30 H 0.153 0.847 31 H 0.125 0.875 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.085 0.915 35 H -0.002 1.002 36 H -0.007 1.007 37 H 0.265 0.735 38 H 0.258 0.742 39 H 0.133 0.867 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.301 -27.507 15.239 31.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.238 6.238 3 C 0.097 3.903 4 C -0.174 4.174 5 C -0.064 4.064 6 C -0.081 4.081 7 C 0.029 3.971 8 N -0.223 5.223 9 C -0.139 4.139 10 C -0.139 4.139 11 S -0.080 6.080 12 C -0.195 4.195 13 C 0.005 3.995 14 C -0.580 4.580 15 H 0.088 0.912 16 C -0.199 4.199 17 N -0.572 5.572 18 Si 0.798 3.202 19 H -0.181 1.181 20 H -0.203 1.203 21 H -0.205 1.205 22 C -0.109 4.109 23 O -0.083 6.083 24 C -0.056 4.056 25 C -0.227 4.227 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.140 0.860 29 H 0.176 0.824 30 H 0.171 0.829 31 H 0.143 0.857 32 H 0.113 0.887 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.016 0.984 36 H 0.011 0.989 37 H 0.074 0.926 38 H 0.274 0.726 39 H 0.151 0.849 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.777 -28.166 14.146 31.529 hybrid contribution 0.110 1.946 0.566 2.030 sum -0.667 -26.220 14.713 30.073 Atomic orbital electron populations 1.23435 0.76113 1.05939 1.02567 1.86063 1.23724 1.26313 1.87735 1.19435 0.92784 0.84662 0.93382 1.20567 0.91566 0.98859 1.06383 1.21187 1.00927 0.89792 0.94478 1.17341 0.93060 0.85979 1.11723 1.24051 0.77616 0.94681 1.00749 1.70484 1.34487 0.98147 1.19153 1.20988 0.89941 0.95167 1.07800 1.21435 1.07002 0.90254 0.95243 1.87301 1.95638 1.11458 1.13603 1.23356 1.03826 0.89923 1.02438 1.18689 0.95535 0.94658 0.90650 1.21589 1.49644 0.93302 0.93462 0.91230 1.26055 0.94690 1.04416 0.94730 1.70129 1.50691 1.37765 0.98649 0.85271 0.77773 0.78280 0.78921 1.18145 1.20273 1.20466 1.25568 1.02111 0.78831 1.04369 1.84514 1.27130 1.26698 1.69988 1.21021 0.92304 0.98603 0.93716 1.21377 1.01685 0.90863 1.08754 0.91346 0.91605 0.86011 0.82363 0.82939 0.85661 0.88706 0.90629 0.89665 0.98367 0.98906 0.92598 0.72618 0.84879 0.82412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.81 113.37 1.11 1.20 16 2 O -0.33 -4.53 10.49 -91.71 -0.96 -5.49 16 3 C 0.14 2.27 6.69 22.59 0.15 2.42 16 4 C -0.16 -2.32 9.97 22.33 0.22 -2.10 16 5 C -0.04 -0.76 9.71 22.51 0.22 -0.54 16 6 C -0.08 -1.76 5.87 -20.09 -0.12 -1.88 16 7 C 0.23 6.25 7.89 87.29 0.69 6.94 16 8 N -0.49 -15.23 10.91 -293.20 -3.20 -18.43 16 9 C -0.02 -0.51 6.36 41.34 0.26 -0.25 16 10 C 0.01 0.24 6.48 71.24 0.46 0.70 16 11 S -0.31 -11.87 21.72 -56.49 -1.23 -13.09 16 12 C -0.05 -2.01 5.88 71.98 0.42 -1.59 16 13 C 0.04 2.35 4.98 29.85 0.15 2.49 16 14 C -0.54 -30.70 9.11 25.60 0.23 -30.47 16 15 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 16 C 0.00 -0.04 5.46 84.66 0.46 0.43 16 17 N -0.93 -57.49 13.29 21.45 0.28 -57.21 16 18 Si 0.97 44.00 29.54 68.60 2.03 46.03 16 19 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 20 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 21 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 22 C -0.04 -0.79 12.08 66.96 0.81 0.01 16 23 O -0.20 -4.76 10.52 -8.95 -0.09 -4.85 16 24 C -0.04 -0.76 9.68 22.51 0.22 -0.54 16 25 C -0.21 -3.29 9.02 22.33 0.20 -3.09 16 26 H 0.07 0.34 7.66 -2.38 -0.02 0.32 16 27 H 0.07 0.37 7.65 -2.38 -0.02 0.35 16 28 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.16 1.67 8.06 -2.91 -0.02 1.64 16 30 H 0.15 2.06 7.90 -2.91 -0.02 2.04 16 31 H 0.13 2.73 8.14 -2.39 -0.02 2.71 16 32 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 33 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 34 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 35 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 36 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 37 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 38 H 0.26 3.45 8.06 -2.91 -0.02 3.43 16 39 H 0.13 2.91 7.83 -2.91 -0.02 2.89 16 40 H 0.16 1.69 6.28 -2.91 -0.02 1.67 16 Total: -1.00 -74.18 363.23 3.37 -70.81 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: 1.04 Total: 8.49 kcal Atomic # 6 Polarization: -31.75 SS G_CDS: 5.49 Total: -26.26 kcal Atomic # 7 Polarization: -72.72 SS G_CDS: -2.91 Total: -75.63 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: -1.06 Total: -10.34 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: -11.87 SS G_CDS: -1.23 Total: -13.09 kcal Total: -74.18 3.37 -70.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190899784.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.722 kcal (2) G-P(sol) polarization free energy of solvation -74.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds