Wall clock time and date at job start Tue Mar 31 2020 13:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86801 * 120.00065 * 2 1 4 4 H 1.48507 * 109.46974 * 269.99971 * 3 2 1 5 5 H 1.48498 * 109.47001 * 30.00042 * 3 2 1 6 6 H 1.48500 * 109.47272 * 150.00265 * 3 2 1 7 7 C 1.38814 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99994 * 197.00305 * 7 2 1 9 9 N 1.36934 * 120.00182 * 16.99598 * 7 2 1 10 10 C 1.47073 * 120.88545 * 206.58350 * 9 7 2 11 11 C 1.53242 * 108.52069 * 231.20627 * 10 9 7 12 12 N 1.46900 * 109.33827 * 306.16571 * 11 10 9 13 13 C 1.46905 * 110.99665 * 187.25168 * 12 11 10 14 14 C 1.50702 * 109.46695 * 170.00328 * 13 12 11 15 15 C 1.33687 * 125.86817 * 89.98100 * 14 13 12 16 16 N 1.31327 * 115.87595 * 179.75789 * 15 14 13 17 17 C 1.30489 * 116.96703 * 0.45307 * 16 15 14 18 18 C 1.47103 * 125.48442 * 179.83983 * 17 16 15 19 19 C 1.36260 * 125.95944 * 359.69124 * 18 17 16 20 20 C 1.40787 * 106.72804 * 180.02562 * 19 18 17 21 21 C 1.34822 * 107.07040 * 359.97438 * 20 19 18 22 22 O 1.34281 * 108.72145 * 0.24954 * 21 20 19 23 23 S 1.76171 * 109.03512 * 359.57578 * 17 16 15 24 24 C 1.46897 * 111.26885 * 63.10754 * 12 11 10 25 25 C 1.47088 * 120.87750 * 26.60166 * 9 7 2 26 26 H 0.97002 * 120.00262 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.63221 * 111.49603 * 10 9 7 28 28 H 1.09006 * 109.78991 * 351.00567 * 10 9 7 29 29 H 1.09000 * 109.49334 * 186.20597 * 11 10 9 30 30 H 1.09002 * 109.51418 * 66.14372 * 11 10 9 31 31 H 1.09000 * 109.47033 * 50.00126 * 13 12 11 32 32 H 1.08998 * 109.47260 * 290.00220 * 13 12 11 33 33 H 1.07994 * 122.05862 * 0.02562 * 15 14 13 34 34 H 1.08002 * 126.63999 * 0.03374 * 19 18 17 35 35 H 1.07998 * 126.46636 * 180.02562 * 20 19 18 36 36 H 1.08001 * 125.64070 * 179.97438 * 21 20 19 37 37 H 1.09004 * 109.49327 * 56.85347 * 24 12 11 38 38 H 1.08996 * 109.49396 * 176.92999 * 24 12 11 39 39 H 1.09000 * 109.62796 * 248.50254 * 25 9 7 40 40 H 1.08992 * 109.62643 * 9.08672 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0548 -1.2227 0.2730 9 7 1.3705 -2.3620 -0.3477 10 6 1.8310 -3.6610 0.1658 11 6 2.0030 -4.6190 -1.0179 12 7 0.7556 -4.6642 -1.7924 13 6 0.8198 -5.6982 -2.8339 14 6 -0.5467 -5.8849 -3.4412 15 6 -1.0321 -5.2228 -4.4963 16 7 -2.2503 -5.5462 -4.8650 17 6 -2.8567 -6.4646 -4.1638 18 6 -4.2182 -6.9653 -4.4078 19 6 -5.0593 -6.5477 -5.3951 20 6 -6.2476 -7.2897 -5.2559 21 6 -6.0777 -8.1153 -4.2036 22 8 -4.8533 -7.9133 -3.6906 23 16 -1.7795 -7.0139 -2.8826 24 6 0.4407 -3.3518 -2.3724 25 6 0.2047 -2.3418 -1.2443 26 1 -0.4850 0.8400 -0.0004 27 1 1.0921 -4.0638 0.8584 28 1 2.7849 -3.5379 0.6788 29 1 2.2372 -5.6169 -0.6471 30 1 2.8146 -4.2681 -1.6553 31 1 1.1530 -6.6378 -2.3930 32 1 1.5227 -5.3909 -3.6082 33 1 -0.4562 -4.4716 -5.0161 34 1 -4.8541 -5.7935 -6.1405 35 1 -7.1288 -7.2128 -5.8756 36 1 -6.8074 -8.8193 -3.8317 37 1 1.2739 -3.0181 -2.9910 38 1 -0.4580 -3.4306 -2.9840 39 1 -0.6906 -2.6178 -0.6872 40 1 0.0841 -1.3439 -1.6656 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194373639.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:34 Heat of formation + Delta-G solvation = 104.049963 kcal Electronic energy + Delta-G solvation = -23636.380279 eV Core-core repulsion = 20160.040458 eV Total energy + Delta-G solvation = -3476.339821 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.77671 -39.65197 -38.03666 -34.73377 -33.34987 -32.25402 -31.09741 -29.96764 -29.50191 -27.00232 -25.48247 -23.94829 -22.62445 -22.34489 -21.84656 -21.67544 -19.60177 -19.08247 -18.04609 -17.27101 -16.80530 -16.40365 -15.65225 -15.37871 -14.70165 -14.61440 -14.40482 -14.02575 -13.87613 -13.48870 -13.33135 -13.15208 -13.04332 -12.99251 -12.80712 -12.33046 -11.95053 -11.49455 -11.20699 -11.05315 -10.76536 -10.50054 -10.37958 -10.27814 -10.09617 -9.84528 -9.79179 -9.70123 -9.62810 -9.23595 -8.51849 -8.16253 -7.89393 -6.68203 -5.78183 -3.19892 0.17550 1.16393 1.59955 1.67344 2.32607 2.37218 2.97060 3.37717 3.44476 3.45881 4.15826 4.36176 4.50313 4.72344 4.74000 4.85499 4.89970 5.09647 5.38255 5.40811 5.48790 5.53600 5.60541 5.67624 5.73946 5.85040 5.90738 6.05554 6.09138 6.18335 6.19551 6.28517 6.50716 6.66528 6.72965 6.90059 7.21123 7.46697 7.57256 7.62003 7.67855 7.80456 8.42779 9.20564 9.83919 10.42341 11.30531 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.020705 B = 0.002878 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.979690 B = 9726.044024 C =10414.411425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.001 3.999 3 Si 0.903 3.097 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.253 4.253 8 H 0.066 0.934 9 N -0.595 5.595 10 C 0.149 3.851 11 C 0.045 3.955 12 N -0.529 5.529 13 C 0.124 3.876 14 C -0.180 4.180 15 C 0.037 3.963 16 N -0.445 5.445 17 C 0.115 3.885 18 C 0.044 3.956 19 C -0.142 4.142 20 C -0.215 4.215 21 C -0.020 4.020 22 O -0.169 6.169 23 S 0.138 5.862 24 C 0.032 3.968 25 C 0.180 3.820 26 H 0.254 0.746 27 H 0.026 0.974 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.031 0.969 31 H 0.083 0.917 32 H 0.054 0.946 33 H 0.177 0.823 34 H 0.159 0.841 35 H 0.155 0.845 36 H 0.210 0.790 37 H 0.027 0.973 38 H 0.063 0.937 39 H 0.025 0.975 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.654 -17.809 -10.253 21.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.383 4.383 8 H 0.084 0.916 9 N -0.318 5.318 10 C 0.022 3.978 11 C -0.084 4.084 12 N -0.254 5.254 13 C -0.006 4.006 14 C -0.302 4.302 15 C -0.115 4.115 16 N -0.160 5.160 17 C -0.158 4.158 18 C -0.009 4.009 19 C -0.167 4.167 20 C -0.235 4.235 21 C -0.090 4.090 22 O -0.064 6.064 23 S 0.395 5.605 24 C -0.097 4.097 25 C 0.054 3.946 26 H 0.064 0.936 27 H 0.043 0.957 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.049 0.951 31 H 0.101 0.899 32 H 0.072 0.928 33 H 0.194 0.806 34 H 0.177 0.823 35 H 0.173 0.827 36 H 0.227 0.773 37 H 0.045 0.955 38 H 0.081 0.919 39 H 0.043 0.957 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.263 -18.426 -9.224 22.201 hybrid contribution 1.295 1.820 -1.111 2.494 sum -6.969 -16.606 -10.335 20.764 Atomic orbital electron populations 1.70029 1.05209 1.25507 1.53920 1.25035 0.95308 0.98385 1.00993 0.86282 0.79074 0.83705 0.77659 1.21490 1.21735 1.20471 1.19197 0.92577 0.84772 1.41716 0.91586 1.44130 1.34115 1.01254 1.52328 1.20962 0.97885 0.86479 0.92452 1.22658 0.89164 0.99652 0.96919 1.62029 1.34714 1.05845 1.22829 1.20485 0.88592 0.97381 0.94131 1.25957 1.01931 1.01806 1.00475 1.21508 0.90893 1.02003 0.97145 1.66461 1.08716 1.12504 1.28368 1.23781 0.95102 0.99579 0.97298 1.18630 0.91231 0.95340 0.95692 1.21912 0.92637 1.02213 0.99888 1.21846 1.00310 1.00060 1.01251 1.24250 0.85224 1.02763 0.96766 1.84062 1.25941 1.47248 1.49176 1.85020 1.06894 1.37565 1.30997 1.23000 0.98905 0.88914 0.98917 1.20842 0.88918 0.96524 0.88329 0.93588 0.95657 0.92456 0.91878 0.95091 0.89863 0.92772 0.80566 0.82337 0.82699 0.77338 0.95450 0.91901 0.95667 0.89294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.46 11.15 55.49 0.62 -25.84 16 2 C 0.00 0.04 4.94 -17.43 -0.09 -0.05 16 3 Si 0.90 21.78 29.59 -169.99 -5.03 16.75 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.25 -6.97 9.63 -15.06 -0.15 -7.12 16 8 H 0.07 1.78 7.88 -52.49 -0.41 1.37 16 9 N -0.59 -15.11 3.04 -172.01 -0.52 -15.63 16 10 C 0.15 3.14 6.69 -3.60 -0.02 3.12 16 11 C 0.05 0.78 5.62 -3.70 -0.02 0.76 16 12 N -0.53 -9.22 4.62 -235.76 -1.09 -10.31 16 13 C 0.12 1.71 5.49 -4.97 -0.03 1.68 16 14 C -0.18 -2.51 5.50 -35.90 -0.20 -2.71 16 15 C 0.04 0.53 9.57 -19.36 -0.19 0.34 16 16 N -0.45 -6.65 10.52 -11.54 -0.12 -6.77 16 17 C 0.12 1.64 7.46 -14.53 -0.11 1.53 16 18 C 0.04 0.57 7.22 -36.70 -0.26 0.30 16 19 C -0.14 -1.59 10.80 -39.33 -0.42 -2.02 16 20 C -0.22 -1.84 10.88 -39.83 -0.43 -2.27 16 21 C -0.02 -0.16 12.08 29.52 0.36 0.19 16 22 O -0.17 -1.94 10.67 4.47 0.05 -1.90 16 23 S 0.14 1.85 23.42 -107.50 -2.52 -0.66 16 24 C 0.03 0.62 5.43 -3.70 -0.02 0.60 16 25 C 0.18 4.40 5.42 -3.60 -0.02 4.39 16 26 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 27 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 1.15 7.96 -51.93 -0.41 0.74 16 29 H 0.06 0.92 7.99 -51.93 -0.41 0.50 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 1.01 7.97 -51.93 -0.41 0.60 16 32 H 0.05 0.70 8.12 -51.93 -0.42 0.27 16 33 H 0.18 2.22 8.02 -52.49 -0.42 1.80 16 34 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 35 H 0.16 0.89 8.06 -52.49 -0.42 0.47 16 36 H 0.21 0.76 8.06 -52.49 -0.42 0.33 16 37 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 1.16 5.88 -51.93 -0.31 0.86 16 39 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.09 2.41 6.12 -51.93 -0.32 2.09 16 LS Contribution 346.05 15.07 5.21 5.21 Total: -1.00 -31.79 346.05 -10.22 -42.01 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -5.22 Total: -1.62 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -1.60 Total: -1.25 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: -1.11 Total: -58.55 kcal Atomic # 8 Polarization: -1.94 SS G_CDS: 0.05 Total: -1.90 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.75 kcal Atomic # 16 Polarization: 1.85 SS G_CDS: -2.52 Total: -0.66 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.79 -10.22 -42.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194373639.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.056 kcal (2) G-P(sol) polarization free energy of solvation -31.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds