Wall clock time and date at job start Tue Mar 31 2020 13:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86801 * 120.00065 * 2 1 4 4 H 1.48507 * 109.46974 * 269.99971 * 3 2 1 5 5 H 1.48498 * 109.47001 * 30.00042 * 3 2 1 6 6 H 1.48500 * 109.47272 * 150.00265 * 3 2 1 7 7 C 1.38814 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99994 * 197.00305 * 7 2 1 9 9 N 1.36934 * 120.00182 * 16.99598 * 7 2 1 10 10 C 1.47073 * 120.88545 * 206.58350 * 9 7 2 11 11 C 1.53242 * 108.52069 * 231.20627 * 10 9 7 12 12 N 1.46900 * 109.33827 * 306.16571 * 11 10 9 13 13 C 1.46905 * 110.99665 * 187.25168 * 12 11 10 14 14 C 1.50702 * 109.46695 * 170.00328 * 13 12 11 15 15 C 1.33687 * 125.86817 * 89.98100 * 14 13 12 16 16 N 1.31327 * 115.87595 * 179.75789 * 15 14 13 17 17 C 1.30489 * 116.96703 * 0.45307 * 16 15 14 18 18 C 1.47103 * 125.48442 * 179.83983 * 17 16 15 19 19 C 1.36260 * 125.95944 * 359.69124 * 18 17 16 20 20 C 1.40787 * 106.72804 * 180.02562 * 19 18 17 21 21 C 1.34822 * 107.07040 * 359.97438 * 20 19 18 22 22 O 1.34281 * 108.72145 * 0.24954 * 21 20 19 23 23 S 1.76171 * 109.03512 * 359.57578 * 17 16 15 24 24 C 1.46897 * 111.26885 * 63.10754 * 12 11 10 25 25 C 1.47088 * 120.87750 * 26.60166 * 9 7 2 26 26 H 0.97002 * 120.00262 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.63221 * 111.49603 * 10 9 7 28 28 H 1.09006 * 109.78991 * 351.00567 * 10 9 7 29 29 H 1.09000 * 109.49334 * 186.20597 * 11 10 9 30 30 H 1.09002 * 109.51418 * 66.14372 * 11 10 9 31 31 H 1.09000 * 109.47033 * 50.00126 * 13 12 11 32 32 H 1.08998 * 109.47260 * 290.00220 * 13 12 11 33 33 H 1.07994 * 122.05862 * 0.02562 * 15 14 13 34 34 H 1.08002 * 126.63999 * 0.03374 * 19 18 17 35 35 H 1.07998 * 126.46636 * 180.02562 * 20 19 18 36 36 H 1.08001 * 125.64070 * 179.97438 * 21 20 19 37 37 H 1.09004 * 109.49327 * 56.85347 * 24 12 11 38 38 H 1.08996 * 109.49396 * 176.92999 * 24 12 11 39 39 H 1.09000 * 109.62796 * 248.50254 * 25 9 7 40 40 H 1.08992 * 109.62643 * 9.08672 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0548 -1.2227 0.2730 9 7 1.3705 -2.3620 -0.3477 10 6 1.8310 -3.6610 0.1658 11 6 2.0030 -4.6190 -1.0179 12 7 0.7556 -4.6642 -1.7924 13 6 0.8198 -5.6982 -2.8339 14 6 -0.5467 -5.8849 -3.4412 15 6 -1.0321 -5.2228 -4.4963 16 7 -2.2503 -5.5462 -4.8650 17 6 -2.8567 -6.4646 -4.1638 18 6 -4.2182 -6.9653 -4.4078 19 6 -5.0593 -6.5477 -5.3951 20 6 -6.2476 -7.2897 -5.2559 21 6 -6.0777 -8.1153 -4.2036 22 8 -4.8533 -7.9133 -3.6906 23 16 -1.7795 -7.0139 -2.8826 24 6 0.4407 -3.3518 -2.3724 25 6 0.2047 -2.3418 -1.2443 26 1 -0.4850 0.8400 -0.0004 27 1 1.0921 -4.0638 0.8584 28 1 2.7849 -3.5379 0.6788 29 1 2.2372 -5.6169 -0.6471 30 1 2.8146 -4.2681 -1.6553 31 1 1.1530 -6.6378 -2.3930 32 1 1.5227 -5.3909 -3.6082 33 1 -0.4562 -4.4716 -5.0161 34 1 -4.8541 -5.7935 -6.1405 35 1 -7.1288 -7.2128 -5.8756 36 1 -6.8074 -8.8193 -3.8317 37 1 1.2739 -3.0181 -2.9910 38 1 -0.4580 -3.4306 -2.9840 39 1 -0.6906 -2.6178 -0.6872 40 1 0.0841 -1.3439 -1.6656 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194373639.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:33 Heat of formation + Delta-G solvation = 83.249885 kcal Electronic energy + Delta-G solvation = -23637.282238 eV Core-core repulsion = 20160.040458 eV Total energy + Delta-G solvation = -3477.241780 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.55145 -40.75193 -39.53332 -36.43195 -34.20302 -33.72794 -32.48098 -31.66451 -30.68973 -28.43744 -26.80517 -25.36981 -24.29610 -23.75537 -22.85916 -22.46418 -20.88929 -20.43890 -19.09165 -18.71106 -18.13151 -17.25688 -17.05800 -16.56660 -16.37310 -15.99198 -15.53384 -15.38494 -15.25114 -15.10390 -14.80634 -14.72875 -14.10256 -13.89377 -13.64918 -13.47251 -13.33771 -13.10109 -12.99147 -12.63693 -12.41412 -12.21031 -12.05551 -11.89681 -11.65685 -11.49586 -11.12226 -10.83747 -10.64261 -10.60380 -10.28280 -9.35916 -9.00315 -8.70285 -7.88667 -5.33908 -0.82061 0.14047 0.62062 0.75971 1.45890 1.47120 1.54317 1.56279 1.58536 1.96083 2.49738 3.01851 3.26834 3.35372 3.66775 3.77369 3.85351 4.01281 4.04777 4.17906 4.25060 4.33782 4.50422 4.52312 4.63630 4.66376 4.68556 4.76397 4.88636 4.95784 5.00584 5.01339 5.06135 5.17333 5.35074 5.48285 5.59944 5.64489 5.96373 6.10022 6.16032 6.35599 6.55005 7.11340 7.82278 8.36671 9.18158 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.020705 B = 0.002878 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.979690 B = 9726.044024 C =10414.411425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.054 4.054 3 Si 0.970 3.030 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.267 1.267 7 C -0.262 4.262 8 H 0.071 0.929 9 N -0.614 5.614 10 C 0.143 3.857 11 C 0.057 3.943 12 N -0.542 5.542 13 C 0.131 3.869 14 C -0.193 4.193 15 C 0.032 3.968 16 N -0.470 5.470 17 C 0.114 3.886 18 C 0.002 3.998 19 C -0.142 4.142 20 C -0.224 4.224 21 C -0.002 4.002 22 O -0.183 6.183 23 S 0.145 5.855 24 C 0.053 3.947 25 C 0.189 3.811 26 H 0.249 0.751 27 H 0.013 0.987 28 H 0.065 0.935 29 H 0.101 0.899 30 H 0.034 0.966 31 H 0.107 0.893 32 H 0.071 0.929 33 H 0.187 0.813 34 H 0.158 0.842 35 H 0.185 0.815 36 H 0.256 0.744 37 H 0.028 0.972 38 H 0.070 0.930 39 H -0.010 1.010 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.562 -19.675 -11.008 23.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.249 4.249 3 Si 0.798 3.202 4 H -0.212 1.212 5 H -0.223 1.223 6 H -0.191 1.191 7 C -0.392 4.392 8 H 0.089 0.911 9 N -0.338 5.338 10 C 0.017 3.983 11 C -0.072 4.072 12 N -0.267 5.267 13 C 0.001 3.999 14 C -0.315 4.315 15 C -0.120 4.120 16 N -0.186 5.186 17 C -0.159 4.159 18 C -0.051 4.051 19 C -0.166 4.166 20 C -0.243 4.243 21 C -0.071 4.071 22 O -0.079 6.079 23 S 0.402 5.598 24 C -0.076 4.076 25 C 0.063 3.937 26 H 0.058 0.942 27 H 0.031 0.969 28 H 0.083 0.917 29 H 0.119 0.881 30 H 0.052 0.948 31 H 0.125 0.875 32 H 0.089 0.911 33 H 0.204 0.796 34 H 0.175 0.825 35 H 0.202 0.798 36 H 0.271 0.729 37 H 0.046 0.954 38 H 0.088 0.912 39 H 0.008 0.992 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.136 -20.328 -9.980 24.063 hybrid contribution 1.093 2.275 -0.870 2.670 sum -7.043 -18.053 -10.851 22.209 Atomic orbital electron populations 1.70203 1.06772 1.25817 1.55568 1.25832 0.96052 1.01644 1.01372 0.85231 0.78088 0.79371 0.77549 1.21198 1.22297 1.19109 1.19563 0.92959 0.85885 1.40809 0.91125 1.44415 1.34050 1.02331 1.52972 1.21150 0.97573 0.85442 0.94143 1.22500 0.89025 1.00373 0.95297 1.61898 1.35163 1.05268 1.24394 1.20531 0.88833 0.96889 0.93620 1.25994 1.02285 1.02441 1.00794 1.21731 0.90867 1.02090 0.97348 1.66486 1.09304 1.13499 1.29331 1.24129 0.95803 0.98988 0.96969 1.18689 0.91485 0.97443 0.97490 1.22187 0.93504 1.01874 0.99050 1.22213 1.00328 0.99676 1.02035 1.25268 0.84229 1.02036 0.95596 1.84062 1.27241 1.47064 1.49574 1.84888 1.06681 1.37439 1.30771 1.22567 0.99341 0.89086 0.96633 1.20549 0.87674 0.96281 0.89237 0.94165 0.96922 0.91674 0.88110 0.94800 0.87503 0.91134 0.79606 0.82470 0.79796 0.72865 0.95351 0.91155 0.99230 0.92656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.97 11.15 21.65 0.24 -56.73 16 2 C -0.05 -3.06 4.94 84.86 0.42 -2.64 16 3 Si 0.97 45.44 29.59 68.60 2.03 47.47 16 4 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 5 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.26 -14.60 9.63 84.03 0.81 -13.79 16 8 H 0.07 3.79 7.88 -2.91 -0.02 3.77 16 9 N -0.61 -31.63 3.04 -698.13 -2.12 -33.75 16 10 C 0.14 5.93 6.69 86.35 0.58 6.51 16 11 C 0.06 1.83 5.62 86.38 0.49 2.32 16 12 N -0.54 -18.06 4.62 -899.80 -4.16 -22.22 16 13 C 0.13 3.27 5.49 85.56 0.47 3.74 16 14 C -0.19 -5.18 5.50 24.65 0.14 -5.04 16 15 C 0.03 0.90 9.57 83.73 0.80 1.70 16 16 N -0.47 -14.14 10.52 -190.42 -2.00 -16.14 16 17 C 0.11 3.24 7.46 87.22 0.65 3.89 16 18 C 0.00 0.04 7.22 24.14 0.17 0.21 16 19 C -0.14 -3.07 10.80 22.43 0.24 -2.82 16 20 C -0.22 -3.27 10.88 22.11 0.24 -3.03 16 21 C 0.00 -0.03 12.08 67.03 0.81 0.78 16 22 O -0.18 -3.98 10.67 -6.91 -0.07 -4.06 16 23 S 0.14 3.79 23.42 -56.49 -1.32 2.47 16 24 C 0.05 2.07 5.43 86.38 0.47 2.54 16 25 C 0.19 9.57 5.42 86.35 0.47 10.04 16 26 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 27 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.06 2.56 7.96 -2.38 -0.02 2.54 16 29 H 0.10 2.54 7.99 -2.39 -0.02 2.52 16 30 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.11 2.21 7.97 -2.39 -0.02 2.19 16 32 H 0.07 1.59 8.12 -2.39 -0.02 1.57 16 33 H 0.19 4.59 8.02 -2.91 -0.02 4.57 16 34 H 0.16 3.31 8.06 -2.91 -0.02 3.28 16 35 H 0.18 1.50 8.06 -2.91 -0.02 1.47 16 36 H 0.26 0.68 8.06 -2.91 -0.02 0.66 16 37 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.07 2.62 5.88 -2.39 -0.01 2.61 16 39 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 40 H 0.06 3.15 6.12 -2.39 -0.01 3.13 16 Total: -1.00 -71.51 346.05 0.40 -71.11 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: 1.05 Total: 7.46 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: 6.75 Total: 4.40 kcal Atomic # 7 Polarization: -120.80 SS G_CDS: -8.04 Total: -128.84 kcal Atomic # 8 Polarization: -3.98 SS G_CDS: -0.07 Total: -4.06 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Atomic # 16 Polarization: 3.79 SS G_CDS: -1.32 Total: 2.47 kcal Total: -71.51 0.40 -71.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194373639.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.360 kcal (2) G-P(sol) polarization free energy of solvation -71.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds