Wall clock time and date at job start Tue Mar 31 2020 12:04:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17399 * 1
3 3 C 1.47201 * 179.97438 * 2 1
4 4 N 1.46501 * 109.46954 * 244.60794 * 3 2 1
5 5 C 1.37095 * 120.00305 * 266.08560 * 4 3 2
6 6 H 1.07997 * 120.00475 * 200.64920 * 5 4 3
7 7 C 1.38958 * 119.99822 * 20.65375 * 5 4 3
8 8 N 1.31406 * 119.99827 * 10.53227 * 7 5 4
9 9 Si 1.86802 * 119.99781 * 190.53489 * 7 5 4
10 10 H 1.48493 * 109.47331 * 59.99858 * 9 7 5
11 11 H 1.48498 * 109.46689 * 179.97438 * 9 7 5
12 12 H 1.48503 * 109.47185 * 299.99554 * 9 7 5
13 13 C 1.34774 * 119.99819 * 86.08509 * 4 3 2
14 14 O 1.21297 * 120.00239 * 185.23614 * 13 4 3
15 15 C 1.50702 * 119.99982 * 5.23857 * 13 4 3
16 16 H 1.08993 * 109.47113 * 39.20247 * 15 13 4
17 17 C 1.52993 * 109.47130 * 279.19734 * 15 13 4
18 18 O 1.42901 * 109.47076 * 159.19789 * 15 13 4
19 19 C 1.36000 * 117.00215 * 202.99987 * 18 15 13
20 20 C 1.38710 * 119.97969 * 176.48438 * 19 18 15
21 21 C 1.38088 * 120.02780 * 180.25573 * 20 19 18
22 22 C 1.38920 * 119.97245 * 359.46690 * 21 20 19
23 23 S 1.76204 * 120.02173 * 180.29743 * 22 21 20
24 24 C 1.81403 * 102.99532 * 180.02562 * 23 22 21
25 25 C 1.38923 * 119.95183 * 0.27795 * 22 21 20
26 26 C 1.38089 * 119.97066 * 359.97438 * 25 22 21
27 27 H 4.40639 * 5.51376 * 180.02562 * 4 1 2
28 28 H 1.09000 * 109.46822 * 124.61218 * 3 2 1
29 29 H 1.08995 * 109.47797 * 4.61320 * 3 2 1
30 30 H 0.97004 * 119.99742 * 180.02562 * 8 7 5
31 31 H 1.09001 * 109.47400 * 184.96122 * 17 15 13
32 32 H 1.09001 * 109.47718 * 304.96289 * 17 15 13
33 33 H 1.09000 * 109.47007 * 64.96364 * 17 15 13
34 34 H 1.08002 * 119.98509 * 0.02562 * 20 19 18
35 35 H 1.08006 * 120.01526 * 179.73969 * 21 20 19
36 36 H 1.08998 * 109.47073 * 299.99897 * 24 23 22
37 37 H 1.08998 * 109.47326 * 60.00657 * 24 23 22
38 38 H 1.09005 * 109.46901 * 179.97438 * 24 23 22
39 39 H 1.07998 * 120.01267 * 180.02562 * 25 22 21
40 40 H 1.08001 * 119.98256 * 180.02562 * 26 25 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 7 3.1340 0.5932 1.2478
5 6 3.4383 1.9289 1.2994
6 1 4.0929 2.3042 2.0720
7 6 2.9044 2.8000 0.3575
8 7 1.9527 2.3906 -0.4508
9 14 3.5396 4.5528 0.2406
10 1 4.9914 4.5335 -0.0710
11 1 2.8123 5.2720 -0.8360
12 1 3.3204 5.2462 1.5354
13 6 3.2838 -0.1749 2.3451
14 8 3.5963 0.3316 3.4020
15 6 3.0632 -1.6632 2.2589
16 1 3.4679 -2.0366 1.3183
17 6 1.5639 -1.9610 2.3231
18 8 3.7238 -2.3067 3.3505
19 6 4.0454 -3.6184 3.1909
20 6 4.7523 -4.2842 4.1814
21 6 5.0841 -5.6147 4.0181
22 6 4.6999 -6.2894 2.8661
23 16 5.1157 -7.9892 2.6598
24 6 4.4071 -8.3886 1.0384
25 6 3.9873 -5.6230 1.8770
26 6 3.6613 -4.2912 2.0403
27 1 -1.0501 -0.0003 -0.0001
28 1 3.0090 0.5846 -0.8458
29 1 3.0099 -1.0234 -0.0826
30 1 1.5802 2.9986 -1.1086
31 1 1.4084 -3.0396 2.3496
32 1 1.1421 -1.5110 3.2218
33 1 1.0728 -1.5447 1.4435
34 1 5.0467 -3.7608 5.0791
35 1 5.6382 -6.1317 4.7876
36 1 3.3304 -8.2205 1.0611
37 1 4.8585 -7.7517 0.2777
38 1 4.6071 -9.4337 0.8020
39 1 3.6878 -6.1467 0.9812
40 1 3.1070 -3.7731 1.2717
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000281542583.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:04:31
Heat of formation + Delta-G solvation = 33.720495 kcal
Electronic energy + Delta-G solvation = -24115.519367 eV
Core-core repulsion = 20603.837081 eV
Total energy + Delta-G solvation = -3511.682286 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 319.103 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-40.30660 -38.76083 -37.09931 -35.23339 -32.68062 -31.64081 -31.36973 -30.71432
-29.95807 -28.86779 -26.65049 -25.22409 -23.84473 -22.78960 -22.06001 -19.35535
-18.42337 -17.97345 -17.26483 -16.71406 -16.33310 -15.73875 -15.17511 -15.06371
-14.85294 -14.38921 -14.22962 -14.10004 -13.91042 -13.77598 -13.36990 -13.03968
-12.82835 -12.73337 -12.47643 -12.20817 -12.12889 -11.71605 -11.62357 -11.46480
-11.05273 -10.93841 -10.77904 -10.59946 -10.43427 -10.36392 -9.49722 -9.32067
-9.17042 -9.02861 -8.91119 -8.44231 -7.97729 -7.27525 -6.38561 -4.01223
1.25411 1.26119 1.39545 2.26070 3.08925 3.15274 3.19876 3.29042
3.52704 3.65645 3.84212 3.95629 4.13148 4.66268 4.74969 4.78926
4.79414 4.84059 4.97153 5.06259 5.22115 5.28796 5.34433 5.35950
5.43861 5.54174 5.58560 5.86636 5.90248 5.95460 6.11870 6.15764
6.20958 6.33848 6.47880 6.64717 6.69475 6.95355 7.45513 7.53867
7.93995 8.31987 8.70211 9.01175 9.20368 9.74166 10.59580
Molecular weight = 319.10amu
Principal moments of inertia in cm(-1)
A = 0.022886 B = 0.002987 C = 0.002838
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1223.136381 B = 9372.497340 C = 9864.332899
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.262 4.262
2 C -0.103 4.103
3 C 0.228 3.772
4 N -0.435 5.435
5 C -0.309 4.309
6 H 0.104 0.896
7 C 0.032 3.968
8 N -0.871 5.871
9 Si 0.931 3.069
10 H -0.272 1.272
11 H -0.284 1.284
12 H -0.273 1.273
13 C 0.456 3.544
14 O -0.559 6.559
15 C 0.074 3.926
16 H 0.082 0.918
17 C -0.183 4.183
18 O -0.282 6.282
19 C 0.142 3.858
20 C -0.137 4.137
21 C -0.058 4.058
22 C -0.132 4.132
23 S -0.131 6.131
24 C -0.142 4.142
25 C -0.088 4.088
26 C -0.196 4.196
27 H 0.199 0.801
28 H 0.118 0.882
29 H 0.056 0.944
30 H 0.271 0.729
31 H 0.062 0.938
32 H 0.069 0.931
33 H 0.093 0.907
34 H 0.138 0.862
35 H 0.132 0.868
36 H 0.083 0.917
37 H 0.083 0.917
38 H 0.105 0.895
39 H 0.124 0.876
40 H 0.135 0.865
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.587 -17.652 -1.365 17.776
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.281 4.281
2 C -0.105 4.105
3 C 0.105 3.895
4 N -0.155 5.155
5 C -0.436 4.436
6 H 0.121 0.879
7 C -0.172 4.172
8 N -0.510 5.510
9 Si 0.757 3.243
10 H -0.198 1.198
11 H -0.209 1.209
12 H -0.198 1.198
13 C 0.243 3.757
14 O -0.441 6.441
15 C 0.014 3.986
16 H 0.100 0.900
17 C -0.240 4.240
18 O -0.193 6.193
19 C 0.093 3.907
20 C -0.158 4.158
21 C -0.081 4.081
22 C -0.244 4.244
23 S 0.108 5.892
24 C -0.310 4.310
25 C -0.112 4.112
26 C -0.216 4.216
27 H 0.217 0.783
28 H 0.136 0.864
29 H 0.074 0.926
30 H 0.081 0.919
31 H 0.081 0.919
32 H 0.089 0.911
33 H 0.112 0.888
34 H 0.156 0.844
35 H 0.150 0.850
36 H 0.102 0.898
37 H 0.102 0.898
38 H 0.124 0.876
39 H 0.142 0.858
40 H 0.153 0.847
Dipole moment (debyes) X Y Z Total
from point charges 2.297 -17.978 -0.167 18.124
hybrid contribution -1.014 1.769 -1.355 2.448
sum 1.282 -16.209 -1.522 16.331
Atomic orbital electron populations
1.24265 0.95362 1.06252 1.02215 1.22959 0.94194 0.95137 0.98237
1.18381 0.84518 0.95919 0.90661 1.43582 1.56586 1.08670 1.06685
1.19672 1.27201 0.81512 1.15212 0.87872 1.25374 0.94941 1.00153
0.96748 1.69929 1.23533 1.36454 1.21041 0.85915 0.78812 0.81413
0.78115 1.19779 1.20910 1.19774 1.19521 0.85057 0.86460 0.84624
1.90566 1.51492 1.74120 1.27935 1.22349 0.93698 0.93608 0.88909
0.90029 1.22523 0.94144 1.01986 1.05394 1.86286 1.72644 1.19678
1.40730 1.19211 0.93467 0.84182 0.93799 1.20398 1.01675 0.93960
0.99723 1.20512 0.98606 0.93107 0.95844 1.21426 1.06597 0.97189
0.99234 1.85299 1.72687 1.06666 1.24499 1.23631 1.04280 1.05937
0.97201 1.20908 0.97982 0.94368 0.97927 1.21275 1.06020 0.95458
0.98888 0.78345 0.86391 0.92602 0.91866 0.91928 0.91148 0.88824
0.84444 0.85000 0.89828 0.89797 0.87634 0.85786 0.84715
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.26 -5.07 18.42 29.55 0.54 -4.53 16
2 C -0.10 -2.17 8.81 -37.12 -0.33 -2.50 16
3 C 0.23 4.80 4.87 -6.83 -0.03 4.76 16
4 N -0.44 -10.70 2.59 -117.93 -0.31 -11.00 16
5 C -0.31 -8.27 9.31 -14.93 -0.14 -8.41 16
6 H 0.10 2.90 7.42 -52.49 -0.39 2.51 16
7 C 0.03 0.79 5.12 -17.47 -0.09 0.70 16
8 N -0.87 -21.82 8.89 55.50 0.49 -21.33 16
9 Si 0.93 20.09 29.57 -169.99 -5.03 15.07 16
10 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16
11 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16
12 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16
13 C 0.46 11.15 6.84 -10.99 -0.08 11.07 16
14 O -0.56 -15.92 16.34 -13.45 -0.22 -16.14 16
15 C 0.07 1.42 1.89 -27.89 -0.05 1.36 16
16 H 0.08 1.37 4.65 -51.93 -0.24 1.13 16
17 C -0.18 -3.14 8.94 37.15 0.33 -2.80 16
18 O -0.28 -5.47 9.43 -38.73 -0.37 -5.84 16
19 C 0.14 2.26 6.55 -39.23 -0.26 2.01 16
20 C -0.14 -1.94 9.98 -39.46 -0.39 -2.33 16
21 C -0.06 -0.71 9.79 -39.38 -0.39 -1.10 16
22 C -0.13 -1.60 6.11 -39.08 -0.24 -1.84 16
23 S -0.13 -1.33 22.56 -107.50 -2.43 -3.75 16
24 C -0.14 -0.98 9.15 101.05 0.92 -0.06 16
25 C -0.09 -1.06 9.36 -39.38 -0.37 -1.43 16
26 C -0.20 -2.69 8.14 -39.46 -0.32 -3.02 16
27 H 0.20 3.13 7.80 -54.09 -0.42 2.71 16
28 H 0.12 2.62 6.46 -51.93 -0.34 2.28 16
29 H 0.06 0.96 6.05 -51.93 -0.31 0.65 16
30 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16
31 H 0.06 0.90 6.86 -51.93 -0.36 0.54 16
32 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16
33 H 0.09 1.62 3.99 -51.93 -0.21 1.41 16
34 H 0.14 1.81 8.06 -52.49 -0.42 1.38 16
35 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16
36 H 0.08 0.54 7.74 -51.93 -0.40 0.14 16
37 H 0.08 0.55 7.75 -51.92 -0.40 0.15 16
38 H 0.11 0.55 8.14 -51.92 -0.42 0.13 16
39 H 0.12 1.18 5.87 -52.49 -0.31 0.87 16
40 H 0.14 1.72 5.46 -52.49 -0.29 1.43 16
LS Contribution 344.74 15.07 5.20 5.20
Total: -1.00 -31.14 344.74 -8.03 -39.16
By element:
Atomic # 1 Polarization: 11.24 SS G_CDS: -4.49 Total: 6.75 kcal
Atomic # 6 Polarization: -7.22 SS G_CDS: -0.88 Total: -8.10 kcal
Atomic # 7 Polarization: -32.52 SS G_CDS: 0.19 Total: -32.33 kcal
Atomic # 8 Polarization: -21.40 SS G_CDS: -0.58 Total: -21.98 kcal
Atomic # 14 Polarization: 20.09 SS G_CDS: -5.03 Total: 15.07 kcal
Atomic # 16 Polarization: -1.33 SS G_CDS: -2.43 Total: -3.75 kcal
Total LS contribution 5.20 Total: 5.20 kcal
Total: -31.14 -8.03 -39.16 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000281542583.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 72.882 kcal
(2) G-P(sol) polarization free energy of solvation -31.137 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.746 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.025 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.162 kcal
(6) G-S(sol) free energy of system = (1) + (5) 33.720 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds