Wall clock time and date at job start Tue Mar 31 2020 12:04:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17399 * 1
3 3 C 1.47201 * 179.97438 * 2 1
4 4 N 1.46501 * 109.46954 * 244.60794 * 3 2 1
5 5 C 1.37095 * 120.00305 * 266.08560 * 4 3 2
6 6 H 1.07997 * 120.00475 * 200.64920 * 5 4 3
7 7 C 1.38958 * 119.99822 * 20.65375 * 5 4 3
8 8 N 1.31406 * 119.99827 * 10.53227 * 7 5 4
9 9 Si 1.86802 * 119.99781 * 190.53489 * 7 5 4
10 10 H 1.48493 * 109.47331 * 59.99858 * 9 7 5
11 11 H 1.48498 * 109.46689 * 179.97438 * 9 7 5
12 12 H 1.48503 * 109.47185 * 299.99554 * 9 7 5
13 13 C 1.34774 * 119.99819 * 86.08509 * 4 3 2
14 14 O 1.21297 * 120.00239 * 185.23614 * 13 4 3
15 15 C 1.50702 * 119.99982 * 5.23857 * 13 4 3
16 16 H 1.08993 * 109.47113 * 39.20247 * 15 13 4
17 17 C 1.52993 * 109.47130 * 279.19734 * 15 13 4
18 18 O 1.42901 * 109.47076 * 159.19789 * 15 13 4
19 19 C 1.36000 * 117.00215 * 202.99987 * 18 15 13
20 20 C 1.38710 * 119.97969 * 176.48438 * 19 18 15
21 21 C 1.38088 * 120.02780 * 180.25573 * 20 19 18
22 22 C 1.38920 * 119.97245 * 359.46690 * 21 20 19
23 23 S 1.76204 * 120.02173 * 180.29743 * 22 21 20
24 24 C 1.81403 * 102.99532 * 180.02562 * 23 22 21
25 25 C 1.38923 * 119.95183 * 0.27795 * 22 21 20
26 26 C 1.38089 * 119.97066 * 359.97438 * 25 22 21
27 27 H 4.40639 * 5.51376 * 180.02562 * 4 1 2
28 28 H 1.09000 * 109.46822 * 124.61218 * 3 2 1
29 29 H 1.08995 * 109.47797 * 4.61320 * 3 2 1
30 30 H 0.97004 * 119.99742 * 180.02562 * 8 7 5
31 31 H 1.09001 * 109.47400 * 184.96122 * 17 15 13
32 32 H 1.09001 * 109.47718 * 304.96289 * 17 15 13
33 33 H 1.09000 * 109.47007 * 64.96364 * 17 15 13
34 34 H 1.08002 * 119.98509 * 0.02562 * 20 19 18
35 35 H 1.08006 * 120.01526 * 179.73969 * 21 20 19
36 36 H 1.08998 * 109.47073 * 299.99897 * 24 23 22
37 37 H 1.08998 * 109.47326 * 60.00657 * 24 23 22
38 38 H 1.09005 * 109.46901 * 179.97438 * 24 23 22
39 39 H 1.07998 * 120.01267 * 180.02562 * 25 22 21
40 40 H 1.08001 * 119.98256 * 180.02562 * 26 25 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 7 3.1340 0.5932 1.2478
5 6 3.4383 1.9289 1.2994
6 1 4.0929 2.3042 2.0720
7 6 2.9044 2.8000 0.3575
8 7 1.9527 2.3906 -0.4508
9 14 3.5396 4.5528 0.2406
10 1 4.9914 4.5335 -0.0710
11 1 2.8123 5.2720 -0.8360
12 1 3.3204 5.2462 1.5354
13 6 3.2838 -0.1749 2.3451
14 8 3.5963 0.3316 3.4020
15 6 3.0632 -1.6632 2.2589
16 1 3.4679 -2.0366 1.3183
17 6 1.5639 -1.9610 2.3231
18 8 3.7238 -2.3067 3.3505
19 6 4.0454 -3.6184 3.1909
20 6 4.7523 -4.2842 4.1814
21 6 5.0841 -5.6147 4.0181
22 6 4.6999 -6.2894 2.8661
23 16 5.1157 -7.9892 2.6598
24 6 4.4071 -8.3886 1.0384
25 6 3.9873 -5.6230 1.8770
26 6 3.6613 -4.2912 2.0403
27 1 -1.0501 -0.0003 -0.0001
28 1 3.0090 0.5846 -0.8458
29 1 3.0099 -1.0234 -0.0826
30 1 1.5802 2.9986 -1.1086
31 1 1.4084 -3.0396 2.3496
32 1 1.1421 -1.5110 3.2218
33 1 1.0728 -1.5447 1.4435
34 1 5.0467 -3.7608 5.0791
35 1 5.6382 -6.1317 4.7876
36 1 3.3304 -8.2205 1.0611
37 1 4.8585 -7.7517 0.2777
38 1 4.6071 -9.4337 0.8020
39 1 3.6878 -6.1467 0.9812
40 1 3.1070 -3.7731 1.2717
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000281542583.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:04:30
Heat of formation + Delta-G solvation = 17.419002 kcal
Electronic energy + Delta-G solvation = -24116.226253 eV
Core-core repulsion = 20603.837081 eV
Total energy + Delta-G solvation = -3512.389172 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 319.103 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-41.65591 -40.32910 -38.38097 -37.12288 -34.39224 -33.14657 -32.89113 -31.91895
-30.98295 -29.53928 -28.39565 -26.98834 -25.29607 -23.84273 -23.30949 -20.98136
-19.81514 -19.49387 -18.42261 -18.33721 -17.93633 -17.14880 -16.64274 -16.36868
-16.06823 -15.72020 -15.64505 -15.52053 -14.83211 -14.78339 -14.63260 -14.42915
-14.32112 -13.89559 -13.64809 -13.54744 -13.39104 -13.25812 -12.94237 -12.85363
-12.73857 -12.60764 -12.23327 -12.12716 -11.89667 -11.29837 -11.17977 -10.99890
-10.63408 -10.34337 -10.11263 -10.02782 -9.88241 -8.31707 -8.16607 -6.03093
0.21934 0.26251 0.63534 1.35533 1.40999 1.49277 1.53323 1.74969
1.80341 2.26285 2.30880 2.42168 2.62493 3.02419 3.13388 3.58755
3.70281 3.81411 3.86105 3.91949 4.01178 4.20877 4.30936 4.31952
4.36704 4.50887 4.58652 4.61228 4.65301 4.88284 4.94545 4.99419
5.02403 5.08362 5.22052 5.29642 5.40610 5.44343 5.62048 5.96301
6.30529 6.45823 7.06929 7.14033 7.29621 7.84947 8.62935
Molecular weight = 319.10amu
Principal moments of inertia in cm(-1)
A = 0.022886 B = 0.002987 C = 0.002838
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1223.136381 B = 9372.497340 C = 9864.332899
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.243 4.243
2 C -0.142 4.142
3 C 0.229 3.771
4 N -0.441 5.441
5 C -0.350 4.350
6 H 0.073 0.927
7 C 0.007 3.993
8 N -0.872 5.872
9 Si 0.989 3.011
10 H -0.266 1.266
11 H -0.269 1.269
12 H -0.283 1.283
13 C 0.440 3.560
14 O -0.618 6.618
15 C 0.088 3.912
16 H 0.107 0.893
17 C -0.172 4.172
18 O -0.314 6.314
19 C 0.107 3.893
20 C -0.147 4.147
21 C -0.060 4.060
22 C -0.133 4.133
23 S -0.143 6.143
24 C -0.138 4.138
25 C -0.087 4.087
26 C -0.196 4.196
27 H 0.232 0.768
28 H 0.103 0.897
29 H 0.093 0.907
30 H 0.275 0.725
31 H 0.093 0.907
32 H 0.047 0.953
33 H 0.095 0.905
34 H 0.135 0.865
35 H 0.151 0.849
36 H 0.093 0.907
37 H 0.091 0.909
38 H 0.126 0.874
39 H 0.154 0.846
40 H 0.145 0.855
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.750 -19.893 -3.435 20.201
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.262 4.262
2 C -0.144 4.144
3 C 0.107 3.893
4 N -0.160 5.160
5 C -0.477 4.477
6 H 0.091 0.909
7 C -0.197 4.197
8 N -0.509 5.509
9 Si 0.813 3.187
10 H -0.191 1.191
11 H -0.193 1.193
12 H -0.208 1.208
13 C 0.229 3.771
14 O -0.504 6.504
15 C 0.029 3.971
16 H 0.124 0.876
17 C -0.229 4.229
18 O -0.227 6.227
19 C 0.060 3.940
20 C -0.168 4.168
21 C -0.083 4.083
22 C -0.245 4.245
23 S 0.097 5.903
24 C -0.306 4.306
25 C -0.110 4.110
26 C -0.216 4.216
27 H 0.249 0.751
28 H 0.121 0.879
29 H 0.111 0.889
30 H 0.085 0.915
31 H 0.112 0.888
32 H 0.066 0.934
33 H 0.113 0.887
34 H 0.153 0.847
35 H 0.168 0.832
36 H 0.111 0.889
37 H 0.110 0.890
38 H 0.144 0.856
39 H 0.171 0.829
40 H 0.163 0.837
Dipole moment (debyes) X Y Z Total
from point charges 1.446 -20.265 -2.286 20.444
hybrid contribution -0.757 2.314 -0.742 2.546
sum 0.689 -17.950 -3.027 18.217
Atomic orbital electron populations
1.25088 0.96249 1.04492 1.00342 1.23086 0.94612 0.96753 0.99913
1.18458 0.85133 0.97344 0.88376 1.43783 1.56005 1.08226 1.07989
1.19586 1.28770 0.83430 1.15912 0.90876 1.26006 0.94752 1.03117
0.95804 1.70038 1.23005 1.37353 1.20460 0.85063 0.78757 0.77143
0.77763 1.19106 1.19338 1.20836 1.20477 0.83938 0.88913 0.83763
1.90507 1.54024 1.75836 1.30010 1.22107 0.95059 0.89858 0.90075
0.87596 1.22448 0.92426 1.03791 1.04262 1.86226 1.73609 1.21808
1.41069 1.19481 0.95729 0.83077 0.95704 1.20546 1.01792 0.94831
0.99604 1.20739 0.98475 0.92394 0.96693 1.21741 1.05374 0.98533
0.98819 1.85412 1.72862 1.04749 1.27247 1.23784 1.04656 1.07338
0.94866 1.21225 0.97266 0.93704 0.98834 1.21404 1.05843 0.96189
0.98148 0.75125 0.87929 0.88922 0.91492 0.88802 0.93360 0.88668
0.84696 0.83183 0.88855 0.88978 0.85601 0.82867 0.83699
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.24 -8.88 18.42 74.32 1.37 -7.51 16
2 C -0.14 -5.79 8.81 31.13 0.27 -5.51 16
3 C 0.23 9.57 4.87 84.57 0.41 9.98 16
4 N -0.44 -22.36 2.59 -645.41 -1.67 -24.03 16
5 C -0.35 -19.51 9.31 84.04 0.78 -18.73 16
6 H 0.07 4.41 7.42 -2.91 -0.02 4.39 16
7 C 0.01 0.35 5.12 84.93 0.43 0.78 16
8 N -0.87 -43.28 8.89 21.66 0.19 -43.09 16
9 Si 0.99 41.46 29.57 68.60 2.03 43.49 16
10 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16
11 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16
12 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16
13 C 0.44 22.41 6.84 87.66 0.60 23.01 16
14 O -0.62 -37.48 16.34 15.08 0.25 -37.23 16
15 C 0.09 3.41 1.89 29.85 0.06 3.47 16
16 H 0.11 3.45 4.65 -2.39 -0.01 3.44 16
17 C -0.17 -5.78 8.94 71.98 0.64 -5.14 16
18 O -0.31 -12.58 9.43 -75.39 -0.71 -13.29 16
19 C 0.11 3.42 6.55 22.50 0.15 3.57 16
20 C -0.15 -4.19 9.98 22.35 0.22 -3.97 16
21 C -0.06 -1.42 9.79 22.40 0.22 -1.20 16
22 C -0.13 -2.91 6.11 22.60 0.14 -2.77 16
23 S -0.14 -2.49 22.56 -56.49 -1.27 -3.77 16
24 C -0.14 -1.37 9.15 113.37 1.04 -0.33 16
25 C -0.09 -1.84 9.36 22.40 0.21 -1.63 16
26 C -0.20 -5.02 8.14 22.35 0.18 -4.84 16
27 H 0.23 6.50 7.80 -4.41 -0.03 6.47 16
28 H 0.10 4.56 6.46 -2.39 -0.02 4.55 16
29 H 0.09 3.08 6.05 -2.39 -0.01 3.06 16
30 H 0.27 12.95 8.31 -92.71 -0.77 12.18 16
31 H 0.09 2.52 6.86 -2.39 -0.02 2.51 16
32 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16
33 H 0.09 3.16 3.99 -2.39 -0.01 3.15 16
34 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16
35 H 0.15 2.88 8.06 -2.91 -0.02 2.85 16
36 H 0.09 0.80 7.74 -2.39 -0.02 0.78 16
37 H 0.09 0.82 7.75 -2.39 -0.02 0.80 16
38 H 0.13 0.79 8.14 -2.39 -0.02 0.77 16
39 H 0.15 2.27 5.87 -2.91 -0.02 2.25 16
40 H 0.15 3.31 5.46 -2.91 -0.02 3.29 16
Total: -1.00 -70.91 344.74 6.61 -64.31
By element:
Atomic # 1 Polarization: 23.37 SS G_CDS: 1.07 Total: 24.44 kcal
Atomic # 6 Polarization: -17.55 SS G_CDS: 6.73 Total: -10.82 kcal
Atomic # 7 Polarization: -65.64 SS G_CDS: -1.48 Total: -67.12 kcal
Atomic # 8 Polarization: -50.06 SS G_CDS: -0.46 Total: -50.52 kcal
Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal
Atomic # 16 Polarization: -2.49 SS G_CDS: -1.27 Total: -3.77 kcal
Total: -70.91 6.61 -64.31 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000281542583.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 81.725 kcal
(2) G-P(sol) polarization free energy of solvation -70.914 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.811 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.608 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.306 kcal
(6) G-S(sol) free energy of system = (1) + (5) 17.419 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds