Wall clock time and date at job start Tue Mar 31 2020 13:09:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30851 * 1
3 3 Si 1.86797 * 120.00388 * 2 1
4 4 H 1.48499 * 109.47240 * 275.38970 * 3 2 1
5 5 H 1.48502 * 109.46662 * 35.38610 * 3 2 1
6 6 H 1.48496 * 109.47262 * 155.38674 * 3 2 1
7 7 C 1.39957 * 119.99934 * 180.02562 * 2 1 3
8 8 H 1.08004 * 119.99477 * 343.08438 * 7 2 1
9 9 C 1.41064 * 120.00298 * 163.08113 * 7 2 1
10 10 C 1.40738 * 120.29182 * 330.89053 * 9 7 2
11 11 C 1.37543 * 119.81411 * 180.02562 * 10 9 7
12 12 Cl 1.73599 * 119.79367 * 179.97438 * 11 10 9
13 13 C 1.39007 * 120.41703 * 0.02562 * 11 10 9
14 14 C 1.38189 * 120.60567 * 359.70046 * 13 11 10
15 15 C 1.38610 * 120.16826 * 0.55415 * 14 13 11
16 16 N 1.39151 * 120.21311 * 179.74620 * 15 14 13
17 17 C 1.34774 * 119.99698 * 331.55893 * 16 15 14
18 18 O 1.21279 * 120.00528 * 4.68413 * 17 16 15
19 19 C 1.50698 * 119.99822 * 184.69501 * 17 16 15
20 20 H 1.09002 * 115.57601 * 298.81325 * 19 17 16
21 21 C 1.53090 * 117.51307 * 153.06407 * 19 17 16
22 22 C 1.52556 * 117.51370 * 84.56103 * 19 17 16
23 23 C 1.53876 * 120.82363 * 217.66889 * 22 19 17
24 24 C 1.54991 * 104.17930 * 167.71107 * 23 22 19
25 25 C 1.54927 * 102.81717 * 322.35432 * 24 23 22
26 26 C 1.53834 * 121.24695 * 356.93997 * 22 19 17
27 27 H 0.97002 * 119.99839 * 359.97438 * 1 2 3
28 28 H 1.08004 * 120.09718 * 0.04053 * 10 9 7
29 29 H 1.07997 * 119.69709 * 179.97438 * 13 11 10
30 30 H 1.07993 * 119.92041 * 180.30056 * 14 13 11
31 31 H 0.96997 * 119.99588 * 151.54701 * 16 15 14
32 32 H 1.09006 * 117.51065 * 145.08164 * 21 19 17
33 33 H 1.09000 * 117.51034 * 359.97438 * 21 19 17
34 34 H 1.08995 * 110.51086 * 48.99455 * 23 22 19
35 35 H 1.08997 * 110.51168 * 286.42057 * 23 22 19
36 36 H 1.09001 * 110.74154 * 80.68479 * 24 23 22
37 37 H 1.09001 * 110.74201 * 204.02223 * 24 23 22
38 38 H 1.08994 * 110.48437 * 156.41414 * 25 24 23
39 39 H 1.09003 * 110.48191 * 279.04487 * 25 24 23
40 40 H 1.09006 * 110.03978 * 96.70048 * 26 22 19
41 41 H 1.08998 * 110.11004 * 335.22164 * 26 22 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3085 0.0000 0.0000
3 14 2.2426 1.6176 0.0000
4 1 2.3763 2.1121 -1.3939
5 1 1.5016 2.6170 0.8108
6 1 3.5924 1.4098 0.5831
7 6 2.0083 -1.2121 -0.0005
8 1 1.5032 -2.1272 0.2712
9 6 3.3731 -1.2384 -0.3561
10 6 3.8911 -0.2872 -1.2546
11 6 5.2234 -0.3223 -1.5949
12 17 5.8616 0.8509 -2.7039
13 6 6.0617 -1.2920 -1.0572
14 6 5.5726 -2.2309 -0.1690
15 6 4.2330 -2.2216 0.1869
16 7 3.7384 -3.1699 1.0771
17 6 4.3190 -4.3833 1.1604
18 8 5.3231 -4.6203 0.5227
19 6 3.7204 -5.4458 2.0457
20 1 3.6720 -5.2017 3.1069
21 6 3.9745 -6.9073 1.6673
22 6 2.5924 -6.2933 1.4655
23 6 1.4025 -6.7271 2.3394
24 6 0.3647 -7.2711 1.3249
25 6 0.5210 -6.3064 0.1227
26 6 2.0377 -6.0263 0.0557
27 1 -0.4850 0.8401 0.0004
28 1 3.2445 0.4685 -1.6757
29 1 7.1058 -1.3091 -1.3327
30 1 6.2349 -2.9763 0.2457
31 1 2.9760 -2.9574 1.6378
32 1 4.0932 -7.6244 2.4796
33 1 4.5742 -7.1001 0.7777
34 1 0.9957 -5.8736 2.8815
35 1 1.7046 -7.5109 3.0341
36 1 0.6082 -8.2930 1.0339
37 1 -0.6431 -7.2154 1.7362
38 1 0.1803 -6.7835 -0.7961
39 1 -0.0299 -5.3827 0.3008
40 1 2.5100 -6.6947 -0.6643
41 1 2.2144 -4.9883 -0.2261
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000335192177.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:09:10
Heat of formation + Delta-G solvation = -14.751094 kcal
Electronic energy + Delta-G solvation = -24549.004239 eV
Core-core repulsion = 21033.176361 eV
Total energy + Delta-G solvation = -3515.827878 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 319.108 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-40.28460 -38.67832 -37.35616 -35.71292 -34.06184 -33.79099 -33.72113 -30.65167
-28.84678 -28.56979 -25.81046 -25.34304 -23.92509 -22.08849 -20.89200 -20.50371
-19.68101 -18.66625 -17.68981 -16.93633 -16.48966 -15.83252 -15.54980 -15.22134
-14.52475 -14.30962 -14.21735 -13.52120 -13.44073 -13.19102 -12.96467 -12.69811
-12.57241 -12.24395 -12.04349 -11.98341 -11.64691 -11.16112 -11.08865 -11.05979
-10.99533 -10.89194 -10.85451 -10.52067 -10.50956 -10.22719 -10.01275 -9.92983
-9.68474 -9.37256 -9.29831 -8.91288 -7.86106 -7.16441 -7.12539 -4.68061
2.13562 2.47272 2.99584 3.03726 3.05569 3.14153 3.22244 3.56119
3.84890 3.91620 4.30137 4.49378 4.62622 4.83137 4.87840 5.14937
5.17194 5.23740 5.37873 5.52171 5.65533 5.73828 5.80434 5.83338
5.91011 5.96916 5.99440 6.09549 6.11477 6.18259 6.20632 6.39688
6.42738 6.45477 6.50166 6.70813 6.95899 7.13174 7.18210 7.44938
7.47065 7.79795 8.05776 8.13558 8.39892 8.54474 8.80205 9.86332
Molecular weight = 319.11amu
Principal moments of inertia in cm(-1)
A = 0.013452 B = 0.004648 C = 0.003765
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2080.908605 B = 6022.065602 C = 7435.023082
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.797 5.797
2 C 0.088 3.912
3 Si 0.903 3.097
4 H -0.265 1.265
5 H -0.288 1.288
6 H -0.241 1.241
7 C -0.444 4.444
8 H 0.095 0.905
9 C 0.090 3.910
10 C -0.221 4.221
11 C 0.009 3.991
12 Cl -0.119 7.119
13 C -0.218 4.218
14 C -0.076 4.076
15 C 0.037 3.963
16 N -0.633 5.633
17 C 0.533 3.467
18 O -0.537 6.537
19 C -0.176 4.176
20 H 0.125 0.875
21 C -0.136 4.136
22 C -0.104 4.104
23 C -0.089 4.089
24 C -0.121 4.121
25 C -0.122 4.122
26 C -0.095 4.095
27 H 0.288 0.712
28 H 0.114 0.886
29 H 0.108 0.892
30 H 0.135 0.865
31 H 0.409 0.591
32 H 0.099 0.901
33 H 0.104 0.896
34 H 0.073 0.927
35 H 0.065 0.935
36 H 0.065 0.935
37 H 0.066 0.934
38 H 0.064 0.936
39 H 0.071 0.929
40 H 0.065 0.935
41 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.457 -8.860 4.696 10.038
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.420 5.420
2 C -0.133 4.133
3 Si 0.729 3.271
4 H -0.191 1.191
5 H -0.216 1.216
6 H -0.164 1.164
7 C -0.472 4.472
8 H 0.113 0.887
9 C 0.085 3.915
10 C -0.242 4.242
11 C -0.017 4.017
12 Cl -0.090 7.090
13 C -0.239 4.239
14 C -0.097 4.097
15 C -0.057 4.057
16 N -0.274 5.274
17 C 0.320 3.680
18 O -0.415 6.415
19 C -0.197 4.197
20 H 0.143 0.857
21 C -0.173 4.173
22 C -0.104 4.104
23 C -0.127 4.127
24 C -0.158 4.158
25 C -0.160 4.160
26 C -0.133 4.133
27 H 0.099 0.901
28 H 0.131 0.869
29 H 0.126 0.874
30 H 0.152 0.848
31 H 0.245 0.755
32 H 0.118 0.882
33 H 0.122 0.878
34 H 0.092 0.908
35 H 0.084 0.916
36 H 0.084 0.916
37 H 0.085 0.915
38 H 0.083 0.917
39 H 0.090 0.910
40 H 0.084 0.916
41 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges 0.895 -8.866 4.184 9.844
hybrid contribution -0.117 1.148 0.114 1.159
sum 0.778 -7.718 4.298 8.868
Atomic orbital electron populations
1.69669 1.08013 1.30626 1.33696 1.26136 0.94766 1.01695 0.90691
0.86411 0.81462 0.79789 0.79433 1.19137 1.21569 1.16398 1.19255
0.92186 0.96071 1.39714 0.88667 1.17348 0.92754 0.91117 0.90289
1.20681 0.93377 1.05061 1.05038 1.20646 0.93908 0.92292 0.94901
1.98273 1.87514 1.59661 1.63573 1.20209 0.98530 0.99215 1.05901
1.20959 0.93784 0.97564 0.97382 1.17690 0.91994 0.96702 0.99349
1.42905 1.33600 1.11828 1.39111 1.19595 0.84139 0.82156 0.82085
1.90596 1.24742 1.80550 1.45589 1.22275 1.04810 0.92574 1.00072
0.85697 1.23014 0.97716 0.92966 1.03617 1.21906 0.89713 1.01586
0.97199 1.21928 0.93654 1.00369 0.96704 1.22459 0.98541 0.98926
0.95902 1.22338 0.95869 0.99677 0.98068 1.21766 0.95280 1.02581
0.93627 0.90117 0.86859 0.87394 0.84768 0.75468 0.88226 0.87809
0.90812 0.91620 0.91626 0.91540 0.91716 0.90985 0.91588 0.90645
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.80 -19.53 13.93 55.55 0.77 -18.75 16
2 C 0.09 2.12 5.43 -17.33 -0.09 2.03 16
3 Si 0.90 19.78 24.45 -169.99 -4.16 15.63 16
4 H -0.27 -5.81 6.71 56.52 0.38 -5.43 16
5 H -0.29 -6.09 7.11 56.52 0.40 -5.69 16
6 H -0.24 -5.45 6.76 56.52 0.38 -5.07 16
7 C -0.44 -10.74 8.84 -37.87 -0.33 -11.07 16
8 H 0.10 2.33 7.49 -52.48 -0.39 1.94 16
9 C 0.09 2.12 5.15 -106.66 -0.55 1.57 16
10 C -0.22 -5.21 6.85 -38.89 -0.27 -5.48 16
11 C 0.01 0.20 6.31 -39.55 -0.25 -0.05 16
12 Cl -0.12 -2.32 28.94 -51.86 -1.50 -3.82 16
13 C -0.22 -4.69 9.82 -39.31 -0.39 -5.07 16
14 C -0.08 -1.68 8.74 -39.46 -0.35 -2.02 16
15 C 0.04 0.82 6.44 -83.18 -0.54 0.29 16
16 N -0.63 -12.00 4.96 -9.48 -0.05 -12.04 16
17 C 0.53 9.52 6.18 -10.99 -0.07 9.45 16
18 O -0.54 -11.18 13.64 5.56 0.08 -11.10 16
19 C -0.18 -2.40 6.04 -91.95 -0.56 -2.96 16
20 H 0.13 1.44 8.14 -51.93 -0.42 1.01 16
21 C -0.14 -1.66 9.76 -26.90 -0.26 -1.92 16
22 C -0.10 -1.29 2.45 -154.07 -0.38 -1.67 16
23 C -0.09 -0.92 6.57 -25.22 -0.17 -1.09 16
24 C -0.12 -1.22 6.91 -24.66 -0.17 -1.39 16
25 C -0.12 -1.48 6.84 -24.99 -0.17 -1.66 16
26 C -0.10 -1.33 6.21 -25.57 -0.16 -1.49 16
27 H 0.29 6.46 8.30 -40.82 -0.34 6.12 16
28 H 0.11 2.70 4.53 -52.48 -0.24 2.46 16
29 H 0.11 2.10 8.06 -52.49 -0.42 1.68 16
30 H 0.13 2.92 5.70 -52.49 -0.30 2.62 16
31 H 0.41 7.17 7.73 -40.82 -0.32 6.85 16
32 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16
33 H 0.10 1.42 7.92 -51.93 -0.41 1.00 16
34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16
35 H 0.07 0.58 8.11 -51.93 -0.42 0.16 16
36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16
37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16
38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16
39 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16
40 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16
41 H 0.07 1.28 7.21 -51.93 -0.37 0.91 16
LS Contribution 345.21 15.07 5.20 5.20
Total: -1.00 -26.45 345.21 -9.78 -36.23
By element:
Atomic # 1 Polarization: 16.60 SS G_CDS: -5.43 Total: 11.17 kcal
Atomic # 6 Polarization: -17.82 SS G_CDS: -4.69 Total: -22.51 kcal
Atomic # 7 Polarization: -31.52 SS G_CDS: 0.73 Total: -30.79 kcal
Atomic # 8 Polarization: -11.18 SS G_CDS: 0.08 Total: -11.10 kcal
Atomic # 14 Polarization: 19.78 SS G_CDS: -4.16 Total: 15.63 kcal
Atomic # 17 Polarization: -2.32 SS G_CDS: -1.50 Total: -3.82 kcal
Total LS contribution 5.20 Total: 5.20 kcal
Total: -26.45 -9.78 -36.23 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000335192177.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 21.481 kcal
(2) G-P(sol) polarization free energy of solvation -26.455 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.974 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.777 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.232 kcal
(6) G-S(sol) free energy of system = (1) + (5) -14.751 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds