Wall clock time and date at job start Tue Mar 31 2020 13:09:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30851 * 1
3 3 Si 1.86797 * 120.00388 * 2 1
4 4 H 1.48499 * 109.47240 * 275.38970 * 3 2 1
5 5 H 1.48502 * 109.46662 * 35.38610 * 3 2 1
6 6 H 1.48496 * 109.47262 * 155.38674 * 3 2 1
7 7 C 1.39957 * 119.99934 * 180.02562 * 2 1 3
8 8 H 1.08004 * 119.99477 * 343.08438 * 7 2 1
9 9 C 1.41064 * 120.00298 * 163.08113 * 7 2 1
10 10 C 1.40738 * 120.29182 * 330.89053 * 9 7 2
11 11 C 1.37543 * 119.81411 * 180.02562 * 10 9 7
12 12 Cl 1.73599 * 119.79367 * 179.97438 * 11 10 9
13 13 C 1.39007 * 120.41703 * 0.02562 * 11 10 9
14 14 C 1.38189 * 120.60567 * 359.70046 * 13 11 10
15 15 C 1.38610 * 120.16826 * 0.55415 * 14 13 11
16 16 N 1.39151 * 120.21311 * 179.74620 * 15 14 13
17 17 C 1.34774 * 119.99698 * 331.55893 * 16 15 14
18 18 O 1.21279 * 120.00528 * 4.68413 * 17 16 15
19 19 C 1.50698 * 119.99822 * 184.69501 * 17 16 15
20 20 H 1.09002 * 115.57601 * 298.81325 * 19 17 16
21 21 C 1.53090 * 117.51307 * 153.06407 * 19 17 16
22 22 C 1.52556 * 117.51370 * 84.56103 * 19 17 16
23 23 C 1.53876 * 120.82363 * 217.66889 * 22 19 17
24 24 C 1.54991 * 104.17930 * 167.71107 * 23 22 19
25 25 C 1.54927 * 102.81717 * 322.35432 * 24 23 22
26 26 C 1.53834 * 121.24695 * 356.93997 * 22 19 17
27 27 H 0.97002 * 119.99839 * 359.97438 * 1 2 3
28 28 H 1.08004 * 120.09718 * 0.04053 * 10 9 7
29 29 H 1.07997 * 119.69709 * 179.97438 * 13 11 10
30 30 H 1.07993 * 119.92041 * 180.30056 * 14 13 11
31 31 H 0.96997 * 119.99588 * 151.54701 * 16 15 14
32 32 H 1.09006 * 117.51065 * 145.08164 * 21 19 17
33 33 H 1.09000 * 117.51034 * 359.97438 * 21 19 17
34 34 H 1.08995 * 110.51086 * 48.99455 * 23 22 19
35 35 H 1.08997 * 110.51168 * 286.42057 * 23 22 19
36 36 H 1.09001 * 110.74154 * 80.68479 * 24 23 22
37 37 H 1.09001 * 110.74201 * 204.02223 * 24 23 22
38 38 H 1.08994 * 110.48437 * 156.41414 * 25 24 23
39 39 H 1.09003 * 110.48191 * 279.04487 * 25 24 23
40 40 H 1.09006 * 110.03978 * 96.70048 * 26 22 19
41 41 H 1.08998 * 110.11004 * 335.22164 * 26 22 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3085 0.0000 0.0000
3 14 2.2426 1.6176 0.0000
4 1 2.3763 2.1121 -1.3939
5 1 1.5016 2.6170 0.8108
6 1 3.5924 1.4098 0.5831
7 6 2.0083 -1.2121 -0.0005
8 1 1.5032 -2.1272 0.2712
9 6 3.3731 -1.2384 -0.3561
10 6 3.8911 -0.2872 -1.2546
11 6 5.2234 -0.3223 -1.5949
12 17 5.8616 0.8509 -2.7039
13 6 6.0617 -1.2920 -1.0572
14 6 5.5726 -2.2309 -0.1690
15 6 4.2330 -2.2216 0.1869
16 7 3.7384 -3.1699 1.0771
17 6 4.3190 -4.3833 1.1604
18 8 5.3231 -4.6203 0.5227
19 6 3.7204 -5.4458 2.0457
20 1 3.6720 -5.2017 3.1069
21 6 3.9745 -6.9073 1.6673
22 6 2.5924 -6.2933 1.4655
23 6 1.4025 -6.7271 2.3394
24 6 0.3647 -7.2711 1.3249
25 6 0.5210 -6.3064 0.1227
26 6 2.0377 -6.0263 0.0557
27 1 -0.4850 0.8401 0.0004
28 1 3.2445 0.4685 -1.6757
29 1 7.1058 -1.3091 -1.3327
30 1 6.2349 -2.9763 0.2457
31 1 2.9760 -2.9574 1.6378
32 1 4.0932 -7.6244 2.4796
33 1 4.5742 -7.1001 0.7777
34 1 0.9957 -5.8736 2.8815
35 1 1.7046 -7.5109 3.0341
36 1 0.6082 -8.2930 1.0339
37 1 -0.6431 -7.2154 1.7362
38 1 0.1803 -6.7835 -0.7961
39 1 -0.0299 -5.3827 0.3008
40 1 2.5100 -6.6947 -0.6643
41 1 2.2144 -4.9883 -0.2261
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000335192177.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:09:09
Heat of formation + Delta-G solvation = -27.038130 kcal
Electronic energy + Delta-G solvation = -24549.537045 eV
Core-core repulsion = 21033.176361 eV
Total energy + Delta-G solvation = -3516.360684 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 319.108 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-41.67889 -40.04770 -38.85313 -37.36590 -35.60037 -35.39685 -35.03199 -32.46154
-30.43055 -29.62841 -27.34947 -26.59617 -25.25083 -23.78079 -22.27845 -21.75120
-20.97395 -19.84597 -19.50881 -18.54591 -17.91196 -17.26049 -16.88640 -16.31397
-16.24911 -15.84422 -15.64677 -15.12157 -14.96988 -14.56014 -14.28673 -14.25619
-13.83434 -13.78991 -13.40176 -13.27712 -13.07942 -12.86180 -12.80408 -12.56351
-12.21332 -12.00330 -11.99634 -11.83839 -11.78733 -11.64356 -11.42848 -11.26830
-11.13485 -10.97495 -10.71641 -10.43198 -9.67221 -8.98153 -8.86180 -6.53992
0.40641 0.65979 1.25813 1.31375 1.34770 1.44953 1.62069 2.07148
2.24018 2.47899 2.77806 3.33776 3.45921 3.63947 3.82633 3.88213
3.99240 4.16354 4.26837 4.34992 4.42250 4.55489 4.66695 4.74731
4.74935 4.78673 4.88645 4.91358 4.98488 5.01620 5.07753 5.13753
5.16135 5.23874 5.27732 5.36641 5.38166 5.44603 5.49985 5.67996
5.73626 6.01010 6.20795 6.44271 6.69526 6.75419 7.28870 8.07673
Molecular weight = 319.11amu
Principal moments of inertia in cm(-1)
A = 0.013452 B = 0.004648 C = 0.003765
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2080.908605 B = 6022.065602 C = 7435.023082
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.826 5.826
2 C 0.064 3.936
3 Si 0.942 3.058
4 H -0.265 1.265
5 H -0.274 1.274
6 H -0.253 1.253
7 C -0.459 4.459
8 H 0.080 0.920
9 C 0.074 3.926
10 C -0.234 4.234
11 C -0.003 4.003
12 Cl -0.094 7.094
13 C -0.208 4.208
14 C -0.088 4.088
15 C 0.039 3.961
16 N -0.634 5.634
17 C 0.532 3.468
18 O -0.568 6.568
19 C -0.186 4.186
20 H 0.154 0.846
21 C -0.123 4.123
22 C -0.100 4.100
23 C -0.084 4.084
24 C -0.114 4.114
25 C -0.123 4.123
26 C -0.100 4.100
27 H 0.296 0.704
28 H 0.108 0.892
29 H 0.131 0.869
30 H 0.138 0.862
31 H 0.415 0.585
32 H 0.135 0.865
33 H 0.085 0.915
34 H 0.073 0.927
35 H 0.092 0.908
36 H 0.079 0.921
37 H 0.080 0.920
38 H 0.070 0.930
39 H 0.054 0.946
40 H 0.061 0.939
41 H 0.036 0.964
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.933 -10.021 5.892 11.663
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.451 5.451
2 C -0.154 4.154
3 Si 0.767 3.233
4 H -0.191 1.191
5 H -0.200 1.200
6 H -0.177 1.177
7 C -0.488 4.488
8 H 0.098 0.902
9 C 0.069 3.931
10 C -0.255 4.255
11 C -0.030 4.030
12 Cl -0.065 7.065
13 C -0.228 4.228
14 C -0.109 4.109
15 C -0.057 4.057
16 N -0.275 5.275
17 C 0.322 3.678
18 O -0.448 6.448
19 C -0.207 4.207
20 H 0.171 0.829
21 C -0.160 4.160
22 C -0.100 4.100
23 C -0.121 4.121
24 C -0.151 4.151
25 C -0.160 4.160
26 C -0.137 4.137
27 H 0.107 0.893
28 H 0.126 0.874
29 H 0.149 0.851
30 H 0.155 0.845
31 H 0.252 0.748
32 H 0.153 0.847
33 H 0.103 0.897
34 H 0.092 0.908
35 H 0.111 0.889
36 H 0.097 0.903
37 H 0.098 0.902
38 H 0.089 0.911
39 H 0.073 0.927
40 H 0.080 0.920
41 H 0.055 0.945
Dipole moment (debyes) X Y Z Total
from point charges 1.354 -10.031 5.391 11.468
hybrid contribution -0.138 1.449 -0.356 1.499
sum 1.216 -8.582 5.035 10.024
Atomic orbital electron populations
1.69675 1.08654 1.31620 1.35133 1.26555 0.95164 1.03282 0.90435
0.85807 0.80123 0.77980 0.79387 1.19120 1.20028 1.17673 1.19194
0.92629 0.95836 1.41152 0.90224 1.17485 0.92806 0.92011 0.90799
1.20750 0.94144 1.05207 1.05370 1.20722 0.93633 0.93104 0.95538
1.98272 1.87063 1.58641 1.62562 1.20518 0.99531 0.98152 1.04624
1.21113 0.93775 0.98001 0.97991 1.17899 0.92085 0.96554 0.99125
1.42990 1.33818 1.12001 1.38728 1.20367 0.83424 0.82242 0.81766
1.90564 1.26247 1.80976 1.47048 1.22333 1.05933 0.91930 1.00475
0.82893 1.23121 0.96648 0.92301 1.03897 1.21979 0.90635 1.00943
0.96459 1.21965 0.92351 1.01171 0.96661 1.22460 0.99384 0.98766
0.94497 1.22327 0.94132 0.99767 0.99820 1.21762 0.96994 1.00005
0.94987 0.89288 0.87389 0.85144 0.84493 0.74833 0.84678 0.89671
0.90826 0.88940 0.90256 0.90173 0.91149 0.92728 0.91985 0.94535
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.83 -41.20 13.93 21.83 0.30 -40.89 16
2 C 0.06 3.13 5.43 85.26 0.46 3.59 16
3 Si 0.94 40.78 24.45 68.60 1.68 42.45 16
4 H -0.27 -11.37 6.71 99.48 0.67 -10.70 16
5 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16
6 H -0.25 -11.35 6.76 99.48 0.67 -10.68 16
7 C -0.46 -22.95 8.84 23.38 0.21 -22.74 16
8 H 0.08 4.11 7.49 -2.91 -0.02 4.09 16
9 C 0.07 3.56 5.15 -21.18 -0.11 3.45 16
10 C -0.23 -11.09 6.85 22.72 0.16 -10.93 16
11 C 0.00 -0.13 6.31 22.29 0.14 0.01 16
12 Cl -0.09 -3.53 28.94 -2.72 -0.08 -3.61 16
13 C -0.21 -8.74 9.82 22.44 0.22 -8.52 16
14 C -0.09 -3.87 8.74 22.35 0.20 -3.67 16
15 C 0.04 1.75 6.44 38.86 0.25 2.00 16
16 N -0.63 -24.49 4.96 -302.30 -1.50 -25.98 16
17 C 0.53 19.05 6.18 87.66 0.54 19.59 16
18 O -0.57 -23.82 13.64 -3.03 -0.04 -23.86 16
19 C -0.19 -4.78 6.04 -11.66 -0.07 -4.85 16
20 H 0.15 3.08 8.14 -2.39 -0.02 3.06 16
21 C -0.12 -2.69 9.76 30.48 0.30 -2.40 16
22 C -0.10 -2.32 2.45 -51.89 -0.13 -2.45 16
23 C -0.08 -1.48 6.57 31.57 0.21 -1.28 16
24 C -0.11 -2.00 6.91 31.93 0.22 -1.78 16
25 C -0.12 -2.96 6.84 31.72 0.22 -2.74 16
26 C -0.10 -2.84 6.21 31.35 0.19 -2.64 16
27 H 0.30 13.41 8.30 -92.71 -0.77 12.64 16
28 H 0.11 5.17 4.53 -2.91 -0.01 5.15 16
29 H 0.13 4.82 8.06 -2.91 -0.02 4.80 16
30 H 0.14 5.95 5.70 -2.91 -0.02 5.93 16
31 H 0.41 14.93 7.73 -92.71 -0.72 14.22 16
32 H 0.14 2.04 8.14 -2.38 -0.02 2.02 16
33 H 0.08 2.23 7.92 -2.39 -0.02 2.21 16
34 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16
35 H 0.09 1.19 8.11 -2.39 -0.02 1.17 16
36 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16
37 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16
38 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16
39 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16
40 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16
41 H 0.04 1.31 7.21 -2.39 -0.02 1.29 16
Total: -1.00 -57.60 345.21 3.64 -53.96
By element:
Atomic # 1 Polarization: 33.02 SS G_CDS: 0.28 Total: 33.29 kcal
Atomic # 6 Polarization: -38.36 SS G_CDS: 3.00 Total: -35.36 kcal
Atomic # 7 Polarization: -65.68 SS G_CDS: -1.19 Total: -66.88 kcal
Atomic # 8 Polarization: -23.82 SS G_CDS: -0.04 Total: -23.86 kcal
Atomic # 14 Polarization: 40.78 SS G_CDS: 1.68 Total: 42.45 kcal
Atomic # 17 Polarization: -3.53 SS G_CDS: -0.08 Total: -3.61 kcal
Total: -57.60 3.64 -53.96 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000335192177.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 26.922 kcal
(2) G-P(sol) polarization free energy of solvation -57.602 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.680 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.642 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.960 kcal
(6) G-S(sol) free energy of system = (1) + (5) -27.038 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds