Wall clock time and date at job start Tue Mar 31 2020 13:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30838 * 1 3 3 Si 1.86801 * 120.00159 * 2 1 4 4 H 1.48504 * 109.46962 * 239.99361 * 3 2 1 5 5 H 1.48494 * 109.47316 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47180 * 119.99847 * 3 2 1 7 7 C 1.39985 * 119.99970 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00068 * 175.20542 * 7 2 1 9 9 C 1.41036 * 119.99415 * 355.20544 * 7 2 1 10 10 C 1.40742 * 120.30930 * 34.90335 * 9 7 2 11 11 C 1.36448 * 119.94679 * 180.02562 * 10 9 7 12 12 C 1.38885 * 120.58609 * 359.71540 * 11 10 9 13 13 C 1.38194 * 120.62523 * 0.56362 * 12 11 10 14 14 C 1.38692 * 120.02788 * 359.44415 * 13 12 11 15 15 N 1.38963 * 120.29044 * 180.29921 * 14 13 12 16 16 C 1.34776 * 119.99956 * 24.84129 * 15 14 13 17 17 O 1.21514 * 120.00028 * 5.57350 * 16 15 14 18 18 C 1.48154 * 119.99773 * 185.57584 * 16 15 14 19 19 C 1.40616 * 119.75024 * 179.72595 * 18 16 15 20 20 N 1.31252 * 120.56669 * 179.67105 * 19 18 16 21 21 C 1.33790 * 119.81036 * 0.62167 * 20 19 18 22 22 C 1.40535 * 120.99422 * 179.66405 * 21 20 19 23 23 C 1.36082 * 119.76040 * 180.02562 * 22 21 20 24 24 C 1.39474 * 121.01380 * 359.97438 * 23 22 21 25 25 C 1.36002 * 120.97752 * 0.02562 * 24 23 22 26 26 C 1.40815 * 119.69984 * 359.97438 * 25 24 23 27 27 N 1.32202 * 119.75616 * 359.97438 * 18 16 15 28 28 H 0.97006 * 119.99718 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.02481 * 359.97438 * 10 9 7 30 30 H 1.08003 * 119.70494 * 179.97438 * 11 10 9 31 31 H 1.08003 * 119.68926 * 180.30005 * 12 11 10 32 32 H 1.07999 * 119.98702 * 179.71964 * 13 12 11 33 33 H 0.97011 * 119.99911 * 204.84867 * 15 14 13 34 34 H 1.07999 * 119.71302 * 0.02562 * 19 18 16 35 35 H 1.08002 * 120.12061 * 359.97438 * 22 21 20 36 36 H 1.08003 * 119.49599 * 180.02562 * 23 22 21 37 37 H 1.07995 * 119.51487 * 180.02562 * 24 23 22 38 38 H 1.08001 * 120.14690 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0963 1.6963 -1.2125 5 1 1.2775 2.7464 -0.0006 6 1 3.0962 1.6964 1.2125 7 6 2.0083 -1.2123 0.0005 8 1 3.0854 -1.2140 -0.0776 9 6 1.3067 -2.4315 0.1032 10 6 0.0416 -2.5756 -0.4965 11 6 -0.6309 -3.7582 -0.3921 12 6 -0.0759 -4.8283 0.2975 13 6 1.1622 -4.7114 0.9004 14 6 1.8682 -3.5210 0.8105 15 7 3.1163 -3.3994 1.4093 16 6 3.8660 -4.4967 1.6334 17 8 3.4972 -5.5789 1.2217 18 6 5.1396 -4.3835 2.3816 19 6 5.9149 -5.5327 2.6175 20 7 7.0490 -5.4499 3.2729 21 6 7.4667 -4.2647 3.7322 22 6 8.6734 -4.1486 4.4432 23 6 9.0740 -2.9307 4.8994 24 6 8.3048 -1.7897 4.6725 25 6 7.1312 -1.8611 3.9889 26 6 6.6827 -3.1035 3.5007 27 7 5.5364 -3.2037 2.8269 28 1 -0.4850 0.8401 -0.0004 29 1 -0.3968 -1.7505 -1.0381 30 1 -1.6017 -3.8644 -0.8535 31 1 -0.6188 -5.7594 0.3670 32 1 1.5820 -5.5487 1.4379 33 1 3.4478 -2.5246 1.6662 34 1 5.5770 -6.4908 2.2511 35 1 9.2802 -5.0228 4.6275 36 1 10.0023 -2.8463 5.4450 37 1 8.6460 -0.8352 5.0452 38 1 6.5464 -0.9689 3.8205 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339169284.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:16 Heat of formation + Delta-G solvation = 61.416046 kcal Electronic energy + Delta-G solvation = -24888.620827 eV Core-core repulsion = 21274.988310 eV Total energy + Delta-G solvation = -3613.632517 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.106 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.61917 -39.63039 -37.73487 -36.99630 -35.08875 -33.83026 -33.65234 -31.18436 -30.82274 -29.63537 -28.49052 -25.97234 -25.25325 -24.56336 -22.45743 -22.07334 -21.02697 -19.89331 -18.67672 -18.36285 -17.67887 -17.18713 -16.25242 -15.72872 -15.54287 -15.30174 -15.05698 -14.61340 -14.41993 -14.14737 -14.08075 -13.74758 -13.03820 -12.69283 -12.42086 -12.16155 -12.08560 -12.00752 -11.90619 -11.84432 -11.74011 -11.32288 -11.19001 -11.01685 -10.52670 -10.29548 -9.83016 -9.65550 -9.38436 -9.23284 -9.16264 -8.88518 -8.83630 -7.34677 -6.95851 -6.65228 -4.46989 -0.13375 0.25166 1.65436 2.26803 2.70307 2.89956 3.02900 3.04801 3.17689 3.38227 3.47511 3.88647 3.89427 3.91337 3.96494 4.12100 4.53797 4.63361 4.68488 4.88534 4.96542 5.00284 5.29643 5.57820 5.61854 5.63048 5.80103 5.96955 6.06301 6.29396 6.40722 6.47483 6.54283 6.83327 7.00633 7.02297 7.14270 7.21968 7.47610 7.61238 7.66727 7.92015 8.05308 8.07486 8.35413 8.51856 8.71418 8.80479 8.92917 10.18998 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.012598 B = 0.004137 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.016381 B = 6766.728277 C = 8848.324909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.075 3.925 3 Si 0.913 3.087 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.469 4.469 8 H 0.075 0.925 9 C 0.098 3.902 10 C -0.138 4.138 11 C -0.119 4.119 12 C -0.214 4.214 13 C -0.100 4.100 14 C 0.018 3.982 15 N -0.603 5.603 16 C 0.548 3.452 17 O -0.526 6.526 18 C 0.074 3.926 19 C 0.128 3.872 20 N -0.429 5.429 21 C 0.087 3.913 22 C -0.089 4.089 23 C -0.093 4.093 24 C -0.106 4.106 25 C -0.073 4.073 26 C 0.078 3.922 27 N -0.394 5.394 28 H 0.280 0.720 29 H 0.133 0.867 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.118 0.882 33 H 0.415 0.585 34 H 0.189 0.811 35 H 0.140 0.860 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.169 -1.224 8.546 16.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.141 4.141 3 Si 0.738 3.262 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.500 4.500 8 H 0.093 0.907 9 C 0.094 3.906 10 C -0.158 4.158 11 C -0.138 4.138 12 C -0.233 4.233 13 C -0.120 4.120 14 C -0.076 4.076 15 N -0.244 5.244 16 C 0.332 3.668 17 O -0.404 6.404 18 C -0.083 4.083 19 C -0.047 4.047 20 N -0.142 5.142 21 C -0.038 4.038 22 C -0.108 4.108 23 C -0.113 4.113 24 C -0.126 4.126 25 C -0.092 4.092 26 C -0.049 4.049 27 N -0.112 5.112 28 H 0.091 0.909 29 H 0.150 0.850 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.136 0.864 33 H 0.253 0.747 34 H 0.205 0.795 35 H 0.158 0.842 36 H 0.153 0.847 37 H 0.155 0.845 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 13.846 -1.694 8.364 16.264 hybrid contribution 0.440 1.265 0.156 1.348 sum 14.286 -0.429 8.520 16.639 Atomic orbital electron populations 1.69743 1.07290 1.29014 1.37092 1.25843 0.94903 1.01056 0.92323 0.86282 0.79891 0.80185 0.79871 1.19028 1.20314 1.18943 1.19283 0.94623 0.90106 1.45980 0.90708 1.17407 0.93200 0.91053 0.88922 1.21195 0.96301 0.96528 1.01799 1.20573 0.98493 0.94303 1.00412 1.20386 0.97250 0.98293 1.07412 1.20790 0.94299 0.96500 1.00384 1.17910 0.86807 0.98172 1.04695 1.42787 1.16274 1.09777 1.55543 1.17595 0.82518 0.85341 0.81378 1.90736 1.70871 1.27288 1.51492 1.22693 0.97339 0.90511 0.97757 1.24007 0.88831 1.00015 0.91865 1.68821 1.13143 1.24535 1.07714 1.19794 0.96377 0.89686 0.97911 1.20794 0.94194 0.98804 0.97030 1.21068 0.99874 0.92065 0.98318 1.21023 0.94267 0.99268 0.98014 1.20970 0.96270 0.95967 0.96018 1.19639 0.91986 0.95014 0.98226 1.68622 1.12234 1.25242 1.05110 0.90897 0.84988 0.89186 0.88974 0.86445 0.74705 0.79461 0.84196 0.84652 0.84544 0.83775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.04 10.60 55.55 0.59 -19.45 16 2 C 0.08 1.81 5.42 -17.32 -0.09 1.71 16 3 Si 0.91 18.12 29.56 -169.99 -5.03 13.09 16 4 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 7 C -0.47 -11.80 8.18 -37.87 -0.31 -12.11 16 8 H 0.07 1.81 7.46 -52.49 -0.39 1.42 16 9 C 0.10 2.52 5.57 -106.64 -0.59 1.93 16 10 C -0.14 -3.52 8.62 -39.28 -0.34 -3.86 16 11 C -0.12 -2.78 9.96 -39.99 -0.40 -3.18 16 12 C -0.21 -4.89 10.04 -39.36 -0.39 -5.29 16 13 C -0.10 -2.37 8.70 -39.43 -0.34 -2.72 16 14 C 0.02 0.44 6.46 -83.21 -0.54 -0.09 16 15 N -0.60 -12.91 5.10 -10.25 -0.05 -12.97 16 16 C 0.55 10.82 7.61 -12.19 -0.09 10.73 16 17 O -0.53 -11.26 13.48 5.35 0.07 -11.19 16 18 C 0.07 1.23 6.76 -82.74 -0.56 0.67 16 19 C 0.13 1.89 10.75 -16.90 -0.18 1.71 16 20 N -0.43 -6.11 10.45 -10.52 -0.11 -6.22 16 21 C 0.09 1.16 6.59 -84.70 -0.56 0.60 16 22 C -0.09 -0.88 9.98 -39.49 -0.39 -1.27 16 23 C -0.09 -0.71 9.95 -39.90 -0.40 -1.10 16 24 C -0.11 -0.85 9.95 -39.92 -0.40 -1.25 16 25 C -0.07 -0.80 9.99 -39.41 -0.39 -1.19 16 26 C 0.08 1.10 6.60 -84.79 -0.56 0.54 16 27 N -0.39 -6.41 9.65 -7.39 -0.07 -6.48 16 28 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 29 H 0.13 3.45 6.13 -52.49 -0.32 3.13 16 30 H 0.09 1.86 8.06 -52.48 -0.42 1.44 16 31 H 0.09 1.87 8.06 -52.48 -0.42 1.45 16 32 H 0.12 2.72 5.79 -52.49 -0.30 2.42 16 33 H 0.42 8.53 7.06 -40.82 -0.29 8.24 16 34 H 0.19 2.44 7.62 -52.49 -0.40 2.04 16 35 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.14 0.59 8.06 -52.48 -0.42 0.17 16 37 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 38 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 331.99 15.07 5.00 5.00 Total: -1.00 -29.10 331.99 -9.51 -38.62 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -3.38 Total: 13.76 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -6.54 Total: -14.16 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: 0.36 Total: -45.12 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.07 Total: -11.19 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.09 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.10 -9.51 -38.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339169284.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.032 kcal (2) G-P(sol) polarization free energy of solvation -29.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds