Wall clock time and date at job start Tue Mar 31 2020 13:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30838 * 1 3 3 Si 1.86801 * 120.00159 * 2 1 4 4 H 1.48504 * 109.46962 * 239.99361 * 3 2 1 5 5 H 1.48494 * 109.47316 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47180 * 119.99847 * 3 2 1 7 7 C 1.39985 * 119.99970 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00068 * 175.20542 * 7 2 1 9 9 C 1.41036 * 119.99415 * 355.20544 * 7 2 1 10 10 C 1.40742 * 120.30930 * 34.90335 * 9 7 2 11 11 C 1.36448 * 119.94679 * 180.02562 * 10 9 7 12 12 C 1.38885 * 120.58609 * 359.71540 * 11 10 9 13 13 C 1.38194 * 120.62523 * 0.56362 * 12 11 10 14 14 C 1.38692 * 120.02788 * 359.44415 * 13 12 11 15 15 N 1.38963 * 120.29044 * 180.29921 * 14 13 12 16 16 C 1.34776 * 119.99956 * 24.84129 * 15 14 13 17 17 O 1.21514 * 120.00028 * 5.57350 * 16 15 14 18 18 C 1.48154 * 119.99773 * 185.57584 * 16 15 14 19 19 C 1.40616 * 119.75024 * 179.72595 * 18 16 15 20 20 N 1.31252 * 120.56669 * 179.67105 * 19 18 16 21 21 C 1.33790 * 119.81036 * 0.62167 * 20 19 18 22 22 C 1.40535 * 120.99422 * 179.66405 * 21 20 19 23 23 C 1.36082 * 119.76040 * 180.02562 * 22 21 20 24 24 C 1.39474 * 121.01380 * 359.97438 * 23 22 21 25 25 C 1.36002 * 120.97752 * 0.02562 * 24 23 22 26 26 C 1.40815 * 119.69984 * 359.97438 * 25 24 23 27 27 N 1.32202 * 119.75616 * 359.97438 * 18 16 15 28 28 H 0.97006 * 119.99718 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.02481 * 359.97438 * 10 9 7 30 30 H 1.08003 * 119.70494 * 179.97438 * 11 10 9 31 31 H 1.08003 * 119.68926 * 180.30005 * 12 11 10 32 32 H 1.07999 * 119.98702 * 179.71964 * 13 12 11 33 33 H 0.97011 * 119.99911 * 204.84867 * 15 14 13 34 34 H 1.07999 * 119.71302 * 0.02562 * 19 18 16 35 35 H 1.08002 * 120.12061 * 359.97438 * 22 21 20 36 36 H 1.08003 * 119.49599 * 180.02562 * 23 22 21 37 37 H 1.07995 * 119.51487 * 180.02562 * 24 23 22 38 38 H 1.08001 * 120.14690 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0963 1.6963 -1.2125 5 1 1.2775 2.7464 -0.0006 6 1 3.0962 1.6964 1.2125 7 6 2.0083 -1.2123 0.0005 8 1 3.0854 -1.2140 -0.0776 9 6 1.3067 -2.4315 0.1032 10 6 0.0416 -2.5756 -0.4965 11 6 -0.6309 -3.7582 -0.3921 12 6 -0.0759 -4.8283 0.2975 13 6 1.1622 -4.7114 0.9004 14 6 1.8682 -3.5210 0.8105 15 7 3.1163 -3.3994 1.4093 16 6 3.8660 -4.4967 1.6334 17 8 3.4972 -5.5789 1.2217 18 6 5.1396 -4.3835 2.3816 19 6 5.9149 -5.5327 2.6175 20 7 7.0490 -5.4499 3.2729 21 6 7.4667 -4.2647 3.7322 22 6 8.6734 -4.1486 4.4432 23 6 9.0740 -2.9307 4.8994 24 6 8.3048 -1.7897 4.6725 25 6 7.1312 -1.8611 3.9889 26 6 6.6827 -3.1035 3.5007 27 7 5.5364 -3.2037 2.8269 28 1 -0.4850 0.8401 -0.0004 29 1 -0.3968 -1.7505 -1.0381 30 1 -1.6017 -3.8644 -0.8535 31 1 -0.6188 -5.7594 0.3670 32 1 1.5820 -5.5487 1.4379 33 1 3.4478 -2.5246 1.6662 34 1 5.5770 -6.4908 2.2511 35 1 9.2802 -5.0228 4.6275 36 1 10.0023 -2.8463 5.4450 37 1 8.6460 -0.8352 5.0452 38 1 6.5464 -0.9689 3.8205 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339169284.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:16 Heat of formation + Delta-G solvation = 44.278922 kcal Electronic energy + Delta-G solvation = -24889.363949 eV Core-core repulsion = 21274.988310 eV Total energy + Delta-G solvation = -3614.375639 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.106 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.69105 -41.20323 -39.14873 -38.26751 -36.23972 -35.51805 -35.43581 -32.25009 -31.68719 -31.49082 -30.20309 -27.37028 -26.79232 -25.66953 -23.69338 -23.30370 -22.77072 -21.51578 -19.84442 -19.47812 -19.25304 -18.73157 -17.78331 -17.11748 -16.84062 -16.69746 -16.12724 -15.96005 -15.69491 -15.55599 -15.33911 -14.81710 -14.74051 -14.43823 -14.17993 -13.70456 -13.10132 -12.99362 -12.98511 -12.95651 -12.89156 -12.84106 -12.73641 -12.72930 -12.16204 -12.07294 -11.63355 -11.31111 -11.06669 -10.89233 -10.29914 -10.11932 -9.66661 -9.25407 -8.79266 -8.46827 -6.38127 -1.16534 -0.72402 0.63247 0.86176 1.05180 1.39824 1.43974 1.50211 1.53637 1.98586 2.09706 2.22535 2.71880 2.80257 2.89696 2.94746 3.07817 3.63533 3.66924 3.68070 3.95583 4.09360 4.23926 4.34945 4.50931 4.62437 4.74083 4.79643 4.85725 5.02887 5.04944 5.12918 5.17170 5.29170 5.31496 5.39436 5.66521 5.76084 5.80885 5.92716 6.08824 6.16075 6.22436 6.39641 6.59486 6.68208 6.91618 6.95379 7.15462 8.39761 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.012598 B = 0.004137 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.016381 B = 6766.728277 C = 8848.324909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.035 3.965 3 Si 0.982 3.018 4 H -0.263 1.263 5 H -0.269 1.269 6 H -0.257 1.257 7 C -0.494 4.494 8 H 0.073 0.927 9 C 0.068 3.932 10 C -0.161 4.161 11 C -0.122 4.122 12 C -0.213 4.213 13 C -0.114 4.114 14 C 0.012 3.988 15 N -0.611 5.611 16 C 0.554 3.446 17 O -0.547 6.547 18 C 0.047 3.953 19 C 0.122 3.878 20 N -0.432 5.432 21 C 0.076 3.924 22 C -0.103 4.103 23 C -0.065 4.065 24 C -0.081 4.081 25 C -0.096 4.096 26 C 0.056 3.944 27 N -0.408 5.408 28 H 0.286 0.714 29 H 0.119 0.881 30 H 0.116 0.884 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.416 0.584 34 H 0.196 0.804 35 H 0.160 0.840 36 H 0.183 0.817 37 H 0.178 0.822 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.319 -0.037 10.557 20.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.178 4.178 3 Si 0.803 3.197 4 H -0.188 1.188 5 H -0.194 1.194 6 H -0.181 1.181 7 C -0.524 4.524 8 H 0.092 0.908 9 C 0.065 3.935 10 C -0.181 4.181 11 C -0.141 4.141 12 C -0.232 4.232 13 C -0.134 4.134 14 C -0.082 4.082 15 N -0.252 5.252 16 C 0.340 3.660 17 O -0.425 6.425 18 C -0.107 4.107 19 C -0.052 4.052 20 N -0.146 5.146 21 C -0.050 4.050 22 C -0.122 4.122 23 C -0.085 4.085 24 C -0.101 4.101 25 C -0.115 4.115 26 C -0.072 4.072 27 N -0.127 5.127 28 H 0.097 0.903 29 H 0.137 0.863 30 H 0.134 0.866 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.254 0.746 34 H 0.213 0.787 35 H 0.177 0.823 36 H 0.200 0.800 37 H 0.195 0.805 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 16.981 -0.544 10.367 19.903 hybrid contribution -0.296 0.918 -0.291 1.008 sum 16.685 0.374 10.077 19.495 Atomic orbital electron populations 1.69818 1.08631 1.30164 1.37467 1.26679 0.95673 1.04087 0.91368 0.85236 0.78632 0.75794 0.80003 1.18790 1.19389 1.18109 1.19447 0.94674 0.90834 1.47448 0.90841 1.17732 0.93936 0.92029 0.89847 1.21213 0.96964 0.97137 1.02783 1.20825 0.99411 0.93623 1.00259 1.20727 0.96943 0.99247 1.06312 1.20988 0.94904 0.96511 1.01040 1.18091 0.87878 0.98007 1.04244 1.42774 1.15870 1.10424 1.56147 1.17991 0.83108 0.84402 0.80449 1.90691 1.71788 1.27833 1.52229 1.22142 0.96779 0.91776 1.00021 1.24007 0.89083 0.99628 0.92474 1.68861 1.12655 1.25264 1.07782 1.20331 0.97553 0.89055 0.98037 1.21148 0.93115 1.00894 0.97005 1.21662 1.00597 0.90529 0.95724 1.21569 0.92244 1.01309 0.94992 1.21205 0.97988 0.94884 0.97434 1.20115 0.91564 0.96760 0.98733 1.68489 1.13588 1.25176 1.05399 0.90336 0.86328 0.86600 0.86115 0.86174 0.74576 0.78700 0.82257 0.79956 0.80457 0.83482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.68 10.60 21.84 0.23 -42.45 16 2 C 0.04 1.74 5.42 85.26 0.46 2.20 16 3 Si 0.98 37.38 29.56 68.60 2.03 39.41 16 4 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 5 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 6 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 7 C -0.49 -25.84 8.18 23.38 0.19 -25.65 16 8 H 0.07 3.72 7.46 -2.91 -0.02 3.70 16 9 C 0.07 3.68 5.57 -21.17 -0.12 3.56 16 10 C -0.16 -8.52 8.62 22.46 0.19 -8.32 16 11 C -0.12 -5.80 9.96 22.01 0.22 -5.58 16 12 C -0.21 -9.79 10.04 22.41 0.22 -9.57 16 13 C -0.11 -5.60 8.70 22.37 0.19 -5.40 16 14 C 0.01 0.63 6.46 38.93 0.25 0.88 16 15 N -0.61 -27.58 5.10 -304.63 -1.55 -29.14 16 16 C 0.55 23.08 7.61 86.88 0.66 23.74 16 17 O -0.55 -24.48 13.48 -3.76 -0.05 -24.53 16 18 C 0.05 1.67 6.76 42.30 0.29 1.95 16 19 C 0.12 3.73 10.75 85.36 0.92 4.65 16 20 N -0.43 -12.21 10.45 -187.19 -1.96 -14.16 16 21 C 0.08 1.92 6.59 40.34 0.27 2.19 16 22 C -0.10 -1.65 9.98 22.33 0.22 -1.43 16 23 C -0.07 -0.62 9.95 22.07 0.22 -0.40 16 24 C -0.08 -0.91 9.95 22.05 0.22 -0.69 16 25 C -0.10 -1.89 9.99 22.38 0.22 -1.67 16 26 C 0.06 1.54 6.60 40.48 0.27 1.81 16 27 N -0.41 -13.68 9.65 -177.30 -1.71 -15.39 16 28 H 0.29 13.35 8.30 -92.70 -0.77 12.58 16 29 H 0.12 6.50 6.13 -2.91 -0.02 6.49 16 30 H 0.12 4.76 8.06 -2.91 -0.02 4.73 16 31 H 0.12 4.77 8.06 -2.91 -0.02 4.75 16 32 H 0.12 5.75 5.79 -2.91 -0.02 5.73 16 33 H 0.42 18.15 7.06 -92.70 -0.65 17.49 16 34 H 0.20 5.36 7.62 -2.91 -0.02 5.33 16 35 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 36 H 0.18 0.17 8.06 -2.91 -0.02 0.15 16 37 H 0.18 0.62 8.06 -2.91 -0.02 0.59 16 38 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -67.05 331.99 2.37 -64.68 By element: Atomic # 1 Polarization: 38.81 SS G_CDS: 0.48 Total: 39.29 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: 4.90 Total: -17.72 kcal Atomic # 7 Polarization: -96.15 SS G_CDS: -4.99 Total: -101.13 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.05 Total: -24.53 kcal Atomic # 14 Polarization: 37.38 SS G_CDS: 2.03 Total: 39.41 kcal Total: -67.05 2.37 -64.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339169284.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.962 kcal (2) G-P(sol) polarization free energy of solvation -67.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds