Wall clock time and date at job start Tue Mar 31 2020 13:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30647 * 1 3 3 Si 1.86797 * 120.00113 * 2 1 4 4 H 1.48495 * 109.47397 * 274.69207 * 3 2 1 5 5 H 1.48495 * 109.47029 * 34.69381 * 3 2 1 6 6 H 1.48500 * 109.46980 * 154.69145 * 3 2 1 7 7 C 1.40239 * 119.99760 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99834 * 197.57368 * 7 2 1 9 9 C 1.41084 * 119.99903 * 17.57205 * 7 2 1 10 10 C 1.40904 * 120.10164 * 205.05536 * 9 7 2 11 11 C 1.36297 * 119.89364 * 180.02562 * 10 9 7 12 12 C 1.40035 * 120.10874 * 0.02562 * 11 10 9 13 13 C 1.47583 * 119.89938 * 179.97438 * 12 11 10 14 14 O 1.21599 * 120.00482 * 359.97438 * 13 12 11 15 15 N 1.34783 * 120.00134 * 180.02562 * 13 12 11 16 16 C 1.39621 * 120.00330 * 185.20883 * 15 13 12 17 17 C 1.40116 * 119.66988 * 33.31959 * 16 15 13 18 18 C 1.35854 * 120.89251 * 179.97438 * 17 16 15 19 19 C 1.40677 * 119.95891 * 0.02562 * 18 17 16 20 20 N 1.33712 * 120.95000 * 180.02562 * 19 18 17 21 21 C 1.31361 * 119.75282 * 179.97438 * 20 19 18 22 22 C 1.39604 * 120.73737 * 359.96335 * 21 20 19 23 23 N 1.31373 * 120.69071 * 0.03599 * 22 21 20 24 24 C 1.33812 * 119.70823 * 359.97438 * 23 22 21 25 25 C 1.37740 * 119.67523 * 213.04499 * 16 15 13 26 26 C 1.40045 * 120.20370 * 0.23920 * 12 11 10 27 27 C 1.36299 * 120.10430 * 359.47883 * 26 12 11 28 28 H 0.96999 * 119.99966 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.04807 * 0.02562 * 10 9 7 30 30 H 1.07995 * 119.94636 * 179.97438 * 11 10 9 31 31 H 0.97001 * 119.99609 * 5.21207 * 15 13 12 32 32 H 1.08004 * 119.55379 * 0.02562 * 17 16 15 33 33 H 1.08001 * 120.01629 * 180.02562 * 18 17 16 34 34 H 1.08001 * 119.63226 * 179.97438 * 21 20 19 35 35 H 1.07999 * 119.65514 * 180.02562 * 22 21 20 36 36 H 1.07998 * 120.21816 * 359.97438 * 25 16 15 37 37 H 1.07998 * 119.94893 * 179.74832 * 26 12 11 38 38 H 1.08002 * 120.05795 * 180.23736 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.3888 2.1037 -1.3953 5 1 1.4911 2.6219 0.7969 6 1 3.5841 1.4135 0.5985 7 6 2.0076 -1.2145 -0.0005 8 1 3.0497 -1.2365 0.2818 9 6 1.3515 -2.4076 -0.3700 10 6 1.8219 -3.6486 0.1036 11 6 1.1851 -4.7986 -0.2564 12 6 0.0654 -4.7484 -1.0959 13 6 -0.6202 -5.9966 -1.4832 14 8 -0.2125 -7.0666 -1.0739 15 7 -1.6978 -5.9507 -2.2915 16 6 -2.4115 -7.1178 -2.5705 17 6 -2.5196 -8.1153 -1.5923 18 6 -3.2084 -9.2604 -1.8369 19 6 -3.8245 -9.4563 -3.0864 20 7 -4.5078 -10.5755 -3.3482 21 6 -5.0742 -10.7337 -4.5228 22 6 -4.9719 -9.7451 -5.5032 23 7 -4.3063 -8.6366 -5.2709 24 6 -3.7202 -8.4518 -4.0822 25 6 -3.0073 -7.2749 -3.8024 26 6 -0.4025 -3.5179 -1.5735 27 6 0.2244 -2.3621 -1.2143 28 1 -0.4850 0.8400 -0.0004 29 1 2.6856 -3.6883 0.7507 30 1 1.5451 -5.7502 0.1057 31 1 -1.9774 -5.1068 -2.6795 32 1 -2.0495 -7.9715 -0.6306 33 1 -3.2830 -10.0197 -1.0726 34 1 -5.6252 -11.6386 -4.7324 35 1 -5.4448 -9.8933 -6.4628 36 1 -2.9236 -6.4994 -4.5494 37 1 -1.2639 -3.4843 -2.2240 38 1 -0.1394 -1.4132 -1.5800 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340119702.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:33 Heat of formation + Delta-G solvation = 50.561612 kcal Electronic energy + Delta-G solvation = -24091.406900 eV Core-core repulsion = 20477.303699 eV Total energy + Delta-G solvation = -3614.103201 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.106 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.44871 -39.88885 -37.77516 -36.81510 -34.89988 -34.14590 -33.98255 -30.81794 -30.61858 -29.61943 -29.34183 -26.27567 -25.05323 -24.22833 -22.43081 -22.19409 -21.11366 -20.13337 -18.72095 -18.30614 -17.66286 -17.23951 -16.71420 -15.88267 -15.55126 -15.15122 -14.80569 -14.64412 -14.38462 -14.17021 -13.96532 -13.58234 -13.35006 -12.95141 -12.63993 -12.30163 -12.22460 -12.10278 -11.80359 -11.75557 -11.72613 -11.51850 -11.39115 -11.06511 -10.79989 -10.18534 -10.07842 -9.70162 -9.49860 -9.28554 -9.20622 -8.77208 -8.07234 -7.87020 -7.68965 -7.17720 -4.74935 0.14563 0.49434 1.83060 2.03155 2.69380 2.85114 2.88671 2.90692 2.91535 3.28015 3.62201 3.65656 3.98355 4.00991 4.09778 4.21915 4.40628 4.71194 4.80947 5.00102 5.13866 5.31281 5.41605 5.47206 5.69511 5.79171 5.88882 6.00329 6.11383 6.16632 6.23510 6.36903 6.63685 6.68761 6.82432 6.92692 6.97712 7.18381 7.28329 7.44694 7.59273 7.64501 7.71784 7.86065 7.92796 8.25189 8.48129 8.59686 8.68409 9.73835 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.032607 B = 0.002317 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.514524 B =12079.498176 C =12671.802000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.073 3.927 3 Si 0.916 3.084 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.434 4.434 8 H 0.088 0.912 9 C 0.129 3.871 10 C -0.238 4.238 11 C -0.016 4.016 12 C -0.292 4.292 13 C 0.571 3.429 14 O -0.552 6.552 15 N -0.681 5.681 16 C 0.205 3.795 17 C -0.092 4.092 18 C -0.069 4.069 19 C 0.059 3.941 20 N -0.419 5.419 21 C 0.054 3.946 22 C 0.075 3.925 23 N -0.432 5.432 24 C 0.107 3.893 25 C -0.147 4.147 26 C -0.061 4.061 27 C -0.176 4.176 28 H 0.289 0.711 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.413 0.587 32 H 0.152 0.848 33 H 0.142 0.858 34 H 0.170 0.830 35 H 0.171 0.829 36 H 0.142 0.858 37 H 0.089 0.911 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.616 -9.318 -7.010 14.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.150 4.150 3 Si 0.739 3.261 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.461 4.461 8 H 0.106 0.894 9 C 0.126 3.874 10 C -0.258 4.258 11 C -0.035 4.035 12 C -0.296 4.296 13 C 0.370 3.630 14 O -0.432 6.432 15 N -0.325 5.325 16 C 0.106 3.894 17 C -0.114 4.114 18 C -0.089 4.089 19 C -0.066 4.066 20 N -0.133 5.133 21 C -0.121 4.121 22 C -0.100 4.100 23 N -0.147 5.147 24 C -0.018 4.018 25 C -0.170 4.170 26 C -0.080 4.080 27 C -0.196 4.196 28 H 0.100 0.900 29 H 0.118 0.882 30 H 0.121 0.879 31 H 0.251 0.749 32 H 0.170 0.830 33 H 0.160 0.840 34 H 0.187 0.813 35 H 0.188 0.812 36 H 0.159 0.841 37 H 0.107 0.893 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.348 -9.687 -6.492 14.341 hybrid contribution 0.005 1.176 -0.326 1.220 sum -8.343 -8.511 -6.818 13.730 Atomic orbital electron populations 1.69732 1.07981 1.30359 1.30775 1.26157 0.94872 1.02108 0.91836 0.86147 0.80693 0.79620 0.79602 1.18874 1.19858 1.18117 1.19941 0.98424 0.91116 1.36649 0.89432 1.17831 0.90299 0.92262 0.87018 1.20725 1.04664 0.92581 1.07792 1.20350 0.92533 0.97289 0.93342 1.18694 1.05211 0.90328 1.15400 1.18808 0.77928 0.90237 0.76074 1.90665 1.65548 1.31488 1.55526 1.43768 1.29352 1.09013 1.50325 1.17836 0.91293 0.88143 0.92150 1.21215 0.97045 0.92815 1.00288 1.20652 0.95768 0.97654 0.94841 1.19552 0.99404 0.91670 0.96015 1.68593 1.04917 1.19892 1.19944 1.23890 0.98029 1.00304 0.89844 1.23966 0.95462 0.89966 1.00623 1.68680 1.05919 1.21126 1.18947 1.19153 0.97228 0.94965 0.90423 1.20541 1.03103 0.97873 0.95480 1.20462 0.97328 0.92577 0.97678 1.20978 0.99845 0.96927 1.01810 0.89992 0.88153 0.87897 0.74905 0.83043 0.83998 0.81273 0.81200 0.84052 0.89253 0.86077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.48 10.96 55.56 0.61 -16.87 16 2 C 0.07 1.61 5.14 -17.30 -0.09 1.52 16 3 Si 0.92 16.47 29.60 -169.99 -5.03 11.44 16 4 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 5 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 6 H -0.26 -4.61 7.11 56.52 0.40 -4.21 16 7 C -0.43 -10.26 9.04 -37.75 -0.34 -10.60 16 8 H 0.09 1.97 7.91 -52.49 -0.42 1.56 16 9 C 0.13 3.12 5.57 -106.80 -0.59 2.53 16 10 C -0.24 -5.44 9.73 -39.27 -0.38 -5.82 16 11 C -0.02 -0.35 9.52 -39.61 -0.38 -0.73 16 12 C -0.29 -6.19 5.89 -104.73 -0.62 -6.81 16 13 C 0.57 11.20 7.49 -12.45 -0.09 11.11 16 14 O -0.55 -11.89 13.96 5.28 0.07 -11.81 16 15 N -0.68 -10.87 5.26 -10.82 -0.06 -10.93 16 16 C 0.21 3.14 6.26 -83.79 -0.52 2.61 16 17 C -0.09 -1.39 8.55 -39.73 -0.34 -1.73 16 18 C -0.07 -0.95 9.96 -39.52 -0.39 -1.34 16 19 C 0.06 0.84 6.59 -84.75 -0.56 0.28 16 20 N -0.42 -5.42 10.46 -10.78 -0.11 -5.53 16 21 C 0.05 0.52 11.21 -17.24 -0.19 0.32 16 22 C 0.07 0.72 11.21 -17.24 -0.19 0.52 16 23 N -0.43 -5.67 10.47 -10.82 -0.11 -5.78 16 24 C 0.11 1.54 6.59 -84.81 -0.56 0.98 16 25 C -0.15 -2.07 9.92 -38.94 -0.39 -2.46 16 26 C -0.06 -1.26 9.47 -39.60 -0.37 -1.64 16 27 C -0.18 -4.08 8.63 -39.27 -0.34 -4.42 16 28 H 0.29 5.91 8.29 -40.82 -0.34 5.57 16 29 H 0.10 2.14 8.06 -52.49 -0.42 1.71 16 30 H 0.10 2.18 7.63 -52.49 -0.40 1.78 16 31 H 0.41 5.67 6.82 -40.82 -0.28 5.40 16 32 H 0.15 2.44 6.36 -52.48 -0.33 2.11 16 33 H 0.14 1.67 8.06 -52.49 -0.42 1.24 16 34 H 0.17 0.90 8.06 -52.49 -0.42 0.47 16 35 H 0.17 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.14 1.78 8.06 -52.49 -0.42 1.36 16 37 H 0.09 1.53 6.38 -52.49 -0.34 1.19 16 38 H 0.12 2.84 6.18 -52.49 -0.32 2.52 16 LS Contribution 332.65 15.07 5.01 5.01 Total: -1.00 -28.39 332.65 -9.31 -37.70 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -3.34 Total: 12.44 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: -6.36 Total: -15.67 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: 0.33 Total: -39.11 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.07 Total: -11.81 kcal Atomic # 14 Polarization: 16.47 SS G_CDS: -5.03 Total: 11.44 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.39 -9.31 -37.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340119702.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.266 kcal (2) G-P(sol) polarization free energy of solvation -28.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds